PMC:3585731 / 639-857 JSONTXT

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    testone

    {"project":"testone","denotations":[{"id":"T26","span":{"begin":43,"end":58},"obj":"Phosphorylation"},{"id":"T25","span":{"begin":13,"end":22},"obj":"Regulation"},{"id":"T17","span":{"begin":168,"end":172},"obj":"Protein"},{"id":"T16","span":{"begin":8,"end":12},"obj":"Protein"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T272","span":{"begin":207,"end":217},"obj":"JJ"},{"id":"T271","span":{"begin":199,"end":206},"obj":"IN"},{"id":"T270","span":{"begin":187,"end":198},"obj":"NN"},{"id":"T269","span":{"begin":178,"end":186},"obj":"VB"},{"id":"T268","span":{"begin":174,"end":177},"obj":"NN"},{"id":"T267","span":{"begin":168,"end":172},"obj":"NN"},{"id":"T266","span":{"begin":164,"end":167},"obj":"CC"},{"id":"T265","span":{"begin":156,"end":163},"obj":"NN"},{"id":"T264","span":{"begin":149,"end":155},"obj":"NN"},{"id":"T263","span":{"begin":144,"end":148},"obj":"DT"},{"id":"T262","span":{"begin":139,"end":143},"obj":"IN"},{"id":"T261","span":{"begin":132,"end":138},"obj":"NN"},{"id":"T260","span":{"begin":122,"end":131},"obj":"NN"},{"id":"T259","span":{"begin":110,"end":121},"obj":"JJ"},{"id":"T258","span":{"begin":101,"end":109},"obj":"VB"},{"id":"T257","span":{"begin":90,"end":100},"obj":"NN"},{"id":"T256","span":{"begin":85,"end":89},"obj":"DT"},{"id":"T255","span":{"begin":83,"end":84},"obj":"-COMMA-"},{"id":"T254","span":{"begin":78,"end":83},"obj":"NN"},{"id":"T253","span":{"begin":73,"end":77},"obj":"NN"},{"id":"T252","span":{"begin":70,"end":72},"obj":"IN"},{"id":"T251","span":{"begin":62,"end":68},"obj":"NN"},{"id":"T250","span":{"begin":59,"end":61},"obj":"IN"},{"id":"T249","span":{"begin":43,"end":58},"obj":"NN"},{"id":"T248","span":{"begin":39,"end":42},"obj":"PRP-DOLLAR-"},{"id":"T247","span":{"begin":31,"end":38},"obj":"IN"},{"id":"T246","span":{"begin":23,"end":30},"obj":"NN"},{"id":"T245","span":{"begin":13,"end":22},"obj":"JJ"},{"id":"T244","span":{"begin":8,"end":12},"obj":"NN"},{"id":"T243","span":{"begin":6,"end":7},"obj":"DT"},{"id":"T242","span":{"begin":3,"end":5},"obj":"IN"}],"relations":[{"id":"R106","pred":"arg1Of","subj":"T245","obj":"T244"},{"id":"R107","pred":"arg2Of","subj":"T246","obj":"T242"},{"id":"R108","pred":"arg1Of","subj":"T246","obj":"T243"},{"id":"R109","pred":"arg1Of","subj":"T246","obj":"T245"},{"id":"R110","pred":"arg2Of","subj":"T249","obj":"T247"},{"id":"R111","pred":"arg1Of","subj":"T249","obj":"T248"},{"id":"R112","pred":"arg1Of","subj":"T249","obj":"T250"},{"id":"R113","pred":"arg2Of","subj":"T251","obj":"T250"},{"id":"R114","pred":"arg2Of","subj":"T254","obj":"T252"},{"id":"R115","pred":"arg1Of","subj":"T254","obj":"T253"},{"id":"R116","pred":"arg1Of","subj":"T257","obj":"T256"},{"id":"R117","pred":"arg1Of","subj":"T257","obj":"T258"},{"id":"R118","pred":"arg1Of","subj":"T258","obj":"T252"},{"id":"R119","pred":"arg1Of","subj":"T258","obj":"T255"},{"id":"R120","pred":"arg2Of","subj":"T261","obj":"T258"},{"id":"R121","pred":"arg1Of","subj":"T261","obj":"T259"},{"id":"R122","pred":"arg1Of","subj":"T261","obj":"T260"},{"id":"R123","pred":"arg1Of","subj":"T261","obj":"T262"},{"id":"R124","pred":"arg1Of","subj":"T265","obj":"T264"},{"id":"R125","pred":"arg1Of","subj":"T265","obj":"T266"},{"id":"R126","pred":"arg2Of","subj":"T266","obj":"T262"},{"id":"R127","pred":"arg1Of","subj":"T266","obj":"T263"},{"id":"R128","pred":"arg2Of","subj":"T267","obj":"T266"},{"id":"R129","pred":"arg1Of","subj":"T268","obj":"T269"},{"id":"R130","pred":"arg1Of","subj":"T269","obj":"T271"},{"id":"R131","pred":"arg2Of","subj":"T270","obj":"T269"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T94","span":{"begin":168,"end":172},"obj":"Protein"},{"id":"T93","span":{"begin":8,"end":12},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T408","span":{"begin":168,"end":172},"obj":"http://www.uniprot.org/uniprot/Q13546"},{"id":"T407","span":{"begin":8,"end":12},"obj":"http://www.uniprot.org/uniprot/Q13546"},{"id":"T397","span":{"begin":174,"end":177},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T390","span":{"begin":174,"end":177},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T383","span":{"begin":174,"end":177},"obj":"http://www.uniprot.org/uniprot/P31749"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T132","span":{"begin":149,"end":155},"obj":"http://purl.obolibrary.org/obo/GO_0040007"},{"id":"T131","span":{"begin":78,"end":100},"obj":"http://purl.obolibrary.org/obo/GO_0001775"},{"id":"T130","span":{"begin":43,"end":58},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T128","span":{"begin":122,"end":131},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T112","span":{"begin":187,"end":198},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T104","span":{"begin":187,"end":198},"obj":"http://purl.obolibrary.org/obo/GO_0070266"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    sentences

    {"project":"sentences","denotations":[{"id":"T65","span":{"begin":70,"end":173},"obj":"Sentence"},{"id":"T8","span":{"begin":70,"end":173},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    simple1

    {"project":"simple1","denotations":[{"id":"T148","span":{"begin":8,"end":12},"obj":"Protein"},{"id":"T149","span":{"begin":168,"end":172},"obj":"Protein"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T358","span":{"begin":8,"end":12},"obj":"Protein"},{"id":"T359","span":{"begin":168,"end":172},"obj":"Protein"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T446","span":{"begin":8,"end":12},"obj":"Protein"},{"id":"T447","span":{"begin":168,"end":172},"obj":"Protein"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T425","span":{"begin":101,"end":109},"obj":"Positive_regulation"},{"id":"T415","span":{"begin":8,"end":12},"obj":"Protein"},{"id":"T416","span":{"begin":168,"end":172},"obj":"Protein"}],"relations":[{"id":"R460","pred":"themeOf","subj":"T416","obj":"T425"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T760","span":{"begin":70,"end":172},"obj":"Regulation"},{"id":"T745","span":{"begin":8,"end":22},"obj":"Protein"},{"id":"T737","span":{"begin":59,"end":68},"obj":"Entity"},{"id":"T733","span":{"begin":174,"end":177},"obj":"Protein"},{"id":"T732","span":{"begin":168,"end":172},"obj":"Protein"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T611","span":{"begin":207,"end":217},"obj":"JJ"},{"id":"T610","span":{"begin":199,"end":206},"obj":"IN"},{"id":"T609","span":{"begin":187,"end":198},"obj":"NN"},{"id":"T608","span":{"begin":178,"end":186},"obj":"VBZ"},{"id":"T607","span":{"begin":174,"end":177},"obj":"NNP"},{"id":"T606","span":{"begin":172,"end":173},"obj":"."},{"id":"T605","span":{"begin":168,"end":172},"obj":"NNP"},{"id":"T604","span":{"begin":164,"end":167},"obj":"CC"},{"id":"T603","span":{"begin":156,"end":163},"obj":"NNS"},{"id":"T602","span":{"begin":149,"end":155},"obj":"NN"},{"id":"T601","span":{"begin":144,"end":148},"obj":"DT"},{"id":"T600","span":{"begin":139,"end":143},"obj":"IN"},{"id":"T599","span":{"begin":132,"end":138},"obj":"NNS"},{"id":"T598","span":{"begin":122,"end":131},"obj":"VBG"},{"id":"T597","span":{"begin":110,"end":121},"obj":"JJ"},{"id":"T596","span":{"begin":101,"end":109},"obj":"VBZ"},{"id":"T595","span":{"begin":90,"end":100},"obj":"NN"},{"id":"T594","span":{"begin":85,"end":89},"obj":"DT"},{"id":"T593","span":{"begin":83,"end":84},"obj":","},{"id":"T592","span":{"begin":78,"end":83},"obj":"NNS"},{"id":"T591","span":{"begin":73,"end":77},"obj":"CD"},{"id":"T590","span":{"begin":70,"end":72},"obj":"IN"},{"id":"T589","span":{"begin":68,"end":69},"obj":"."},{"id":"T588","span":{"begin":62,"end":68},"obj":"NNP"},{"id":"T587","span":{"begin":59,"end":61},"obj":"IN"},{"id":"T586","span":{"begin":43,"end":58},"obj":"NN"},{"id":"T585","span":{"begin":39,"end":42},"obj":"PRP$"},{"id":"T584","span":{"begin":31,"end":38},"obj":"IN"},{"id":"T583","span":{"begin":23,"end":30},"obj":"NN"},{"id":"T582","span":{"begin":13,"end":22},"obj":"JJ"},{"id":"T581","span":{"begin":8,"end":12},"obj":"NNP"},{"id":"T580","span":{"begin":6,"end":7},"obj":"DT"},{"id":"T579","span":{"begin":3,"end":5},"obj":"IN"}],"relations":[{"id":"R320","pred":"det","subj":"T580","obj":"T583"},{"id":"R321","pred":"nmod","subj":"T581","obj":"T583"},{"id":"R322","pred":"amod","subj":"T582","obj":"T583"},{"id":"R323","pred":"pobj","subj":"T583","obj":"T579"},{"id":"R325","pred":"poss","subj":"T585","obj":"T586"},{"id":"R326","pred":"pobj","subj":"T586","obj":"T584"},{"id":"R327","pred":"prep","subj":"T587","obj":"T586"},{"id":"R328","pred":"pobj","subj":"T588","obj":"T587"},{"id":"R330","pred":"prep","subj":"T590","obj":"T596"},{"id":"R331","pred":"nummod","subj":"T591","obj":"T592"},{"id":"R332","pred":"pobj","subj":"T592","obj":"T590"},{"id":"R333","pred":"punct","subj":"T593","obj":"T596"},{"id":"R334","pred":"det","subj":"T594","obj":"T595"},{"id":"R335","pred":"nsubj","subj":"T595","obj":"T596"},{"id":"R336","pred":"ROOT","subj":"T596","obj":"T596"},{"id":"R337","pred":"amod","subj":"T597","obj":"T599"},{"id":"R338","pred":"amod","subj":"T598","obj":"T599"},{"id":"R339","pred":"dobj","subj":"T599","obj":"T596"},{"id":"R340","pred":"prep","subj":"T600","obj":"T599"},{"id":"R341","pred":"det","subj":"T601","obj":"T603"},{"id":"R342","pred":"compound","subj":"T602","obj":"T603"},{"id":"R343","pred":"pobj","subj":"T603","obj":"T600"},{"id":"R344","pred":"cc","subj":"T604","obj":"T603"},{"id":"R345","pred":"conj","subj":"T605","obj":"T603"},{"id":"R346","pred":"punct","subj":"T606","obj":"T596"},{"id":"R347","pred":"nsubj","subj":"T607","obj":"T608"},{"id":"R348","pred":"ROOT","subj":"T608","obj":"T608"},{"id":"R349","pred":"dobj","subj":"T609","obj":"T608"},{"id":"R350","pred":"prep","subj":"T610","obj":"T608"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T475","span":{"begin":168,"end":172},"obj":"Protein"},{"id":"T473","span":{"begin":43,"end":58},"obj":"Phosphorylation"},{"id":"T471","span":{"begin":62,"end":68},"obj":"Protein"},{"id":"T470","span":{"begin":8,"end":12},"obj":"Protein"}],"relations":[{"id":"R220","pred":"themeOf","subj":"T471","obj":"T473"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}

    test3

    {"project":"test3","denotations":[{"id":"T52","span":{"begin":168,"end":172},"obj":"Protein"},{"id":"T51","span":{"begin":43,"end":58},"obj":"Phosphorylation"},{"id":"T50","span":{"begin":8,"end":12},"obj":"Protein"},{"id":"T35","span":{"begin":168,"end":172},"obj":"Protein"},{"id":"T34","span":{"begin":8,"end":12},"obj":"Protein"}],"text":"ed in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, this activation requires independent signaling inputs from both growth factors and RIP1. Akt controls necroptosis through downstream "}