> top > docs > PMC:3585731 > spans > 57278-57674 > annotations

PMC:3585731 / 57278-57674 JSONTXT

Annnotations TAB JSON ListView MergeView

testone

Id Subject Object Predicate Lexical cue
T28276 323-338 Phosphorylation denotes Phosphorylation
T28275 149-156 Protein denotes Myr-Akt

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T28361 391-395 NN denotes blot
T28360 383-390 JJ denotes western
T28359 380-382 IN denotes by
T28358 369-379 VB denotes visualized
T28357 365-368 VB denotes was
T28356 357-364 NN denotes protein
T28355 350-356 NN denotes fusion
T28354 346-349 NN denotes GSK
T28353 342-345 DT denotes the
T28352 339-341 IN denotes of
T28351 323-338 NN denotes Phosphorylation
T28350 312-321 NN denotes substrate
T28349 304-311 NN denotes protein
T28348 297-303 NN denotes fusion
T28347 293-296 NN denotes GSK
T28346 291-292 DT denotes a
T28345 288-290 IN denotes of
T28344 279-287 NN denotes presence
T28343 275-278 DT denotes the
T28342 272-274 IN denotes in
T28341 262-271 VB denotes performed
T28340 258-261 VB denotes was
T28339 252-257 NN denotes assay
T28338 246-251 FW denotes vitro
T28337 243-245 FW denotes in
T28336 239-242 DT denotes The
T28335 236-237 -RRB- denotes )
T28334 231-236 NNP denotes Sigma
T28333 230-231 -LRB- denotes (
T28332 224-229 NN denotes beads
T28331 215-223 JJ denotes magnetic
T28330 212-214 NN denotes M2
T28329 202-211 JJ denotes anti-FLAG
T28328 196-201 VB denotes using
T28327 190-195 NN denotes cells
T28326 185-189 NN denotes L929
T28325 180-184 IN denotes from
T28324 161-179 VB denotes immunoprecipitated
T28323 157-160 VB denotes was
T28322 149-156 NN denotes Myr-Akt
T28321 147-148 -COMMA- denotes ,
T28320 142-147 NN denotes brief
T28319 139-141 IN denotes In
T28318 127-138 NNP denotes Technology.
T28317 117-126 NNP denotes Signaling
T28316 112-116 NNP denotes Cell
T28315 107-111 IN denotes from
T28314 105-106 -RRB- denotes )
T28313 91-105 JJ denotes nonradioactive
T28312 90-91 -LRB- denotes (
T28311 86-89 NN denotes kit
T28310 80-85 NN denotes assay
T28309 73-79 NN denotes kinase
T28308 69-72 NN denotes Akt
T28307 65-68 DT denotes the
T28306 59-64 VB denotes using
T28305 50-58 VB denotes measured
T28304 46-49 VB denotes was
T28303 37-45 NN denotes activity
T28302 30-36 NN denotes kinase
T28301 26-29 NN denotes Akt
T28300 20-25 NNP denotes Assay
T28299 13-19 NNP denotes Kinase
T28298 9-12 NNP denotes Akt
T28297 3-8 FW denotes vitro
T28296 0-2 FW denotes In
R19612 T28297 T28296 arg1Of vitro,In
R19613 T28300 T28297 arg1Of Assay,vitro
R19614 T28300 T28298 arg1Of Assay,Akt
R19615 T28300 T28299 arg1Of Assay,Kinase
R19616 T28303 T28301 arg1Of activity,Akt
R19617 T28303 T28302 arg1Of activity,kinase
R19618 T28303 T28304 arg1Of activity,was
R19619 T28303 T28305 arg2Of activity,measured
R19620 T28305 T28304 arg2Of measured,was
R19621 T28306 T28305 arg3Of using,measured
R19622 T28311 T28306 arg2Of kit,using
R19623 T28311 T28307 arg1Of kit,the
R19624 T28311 T28308 arg1Of kit,Akt
R19625 T28311 T28309 arg1Of kit,kinase
R19626 T28311 T28310 arg1Of kit,assay
R19627 T28311 T28312 arg1Of kit,(
R19628 T28311 T28315 arg1Of kit,from
R19629 T28313 T28312 arg2Of nonradioactive,(
R19630 T28314 T28312 arg3Of ),(
R19631 T28318 T28315 arg2Of Technology.,from
R19632 T28318 T28316 arg1Of Technology.,Cell
R19633 T28318 T28317 arg1Of Technology.,Signaling
R19634 T28318 T28319 arg1Of Technology.,In
R19635 T28320 T28319 arg2Of brief,In
R19636 T28322 T28323 arg1Of Myr-Akt,was
R19637 T28322 T28324 arg2Of Myr-Akt,immunoprecipitated
R19638 T28324 T28304 modOf immunoprecipitated,was
R19639 T28324 T28321 arg1Of immunoprecipitated,","
R19640 T28324 T28323 arg2Of immunoprecipitated,was
R19641 T28324 T28325 arg1Of immunoprecipitated,from
R19642 T28327 T28325 arg2Of cells,from
R19643 T28327 T28326 arg1Of cells,L929
R19644 T28327 T28328 arg1Of cells,using
R19645 T28332 T28328 arg2Of beads,using
R19646 T28332 T28329 arg1Of beads,anti-FLAG
R19647 T28332 T28330 arg1Of beads,M2
R19648 T28332 T28331 arg1Of beads,magnetic
R19649 T28332 T28333 arg1Of beads,(
R19650 T28334 T28333 arg2Of Sigma,(
R19651 T28335 T28333 arg3Of ),(
R19652 T28338 T28337 arg1Of vitro,in
R19653 T28339 T28336 arg1Of assay,The
R19654 T28339 T28338 arg1Of assay,vitro
R19655 T28339 T28340 arg1Of assay,was
R19656 T28339 T28341 arg2Of assay,performed
R19657 T28341 T28340 arg2Of performed,was
R19658 T28341 T28342 arg1Of performed,in
R19659 T28344 T28342 arg2Of presence,in
R19660 T28344 T28343 arg1Of presence,the
R19661 T28344 T28345 arg1Of presence,of
R19662 T28350 T28345 arg2Of substrate,of
R19663 T28350 T28346 arg1Of substrate,a
R19664 T28350 T28347 arg1Of substrate,GSK
R19665 T28350 T28348 arg1Of substrate,fusion
R19666 T28350 T28349 arg1Of substrate,protein
R19667 T28351 T28352 arg1Of Phosphorylation,of
R19668 T28351 T28357 arg1Of Phosphorylation,was
R19669 T28351 T28358 arg2Of Phosphorylation,visualized
R19670 T28356 T28352 arg2Of protein,of
R19671 T28356 T28353 arg1Of protein,the
R19672 T28356 T28354 arg1Of protein,GSK
R19673 T28356 T28355 arg1Of protein,fusion
R19674 T28358 T28357 arg2Of visualized,was
R19675 T28361 T28358 arg1Of blot,visualized
R19676 T28361 T28359 arg2Of blot,by
R19677 T28361 T28360 arg1Of blot,western

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T28284 149-156 Protein denotes Myr-Akt

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T28375 153-156 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T28374 69-72 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T28373 26-29 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T28372 9-12 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T28371 153-156 http://www.uniprot.org/uniprot/P31751 denotes Akt
T28370 69-72 http://www.uniprot.org/uniprot/P31751 denotes Akt
T28369 26-29 http://www.uniprot.org/uniprot/P31751 denotes Akt
T28368 9-12 http://www.uniprot.org/uniprot/P31751 denotes Akt
T28367 153-156 http://www.uniprot.org/uniprot/P31749 denotes Akt
T28366 69-72 http://www.uniprot.org/uniprot/P31749 denotes Akt
T28365 26-29 http://www.uniprot.org/uniprot/P31749 denotes Akt
T28364 9-12 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T28288 323-338 http://purl.obolibrary.org/obo/GO_0016310 denotes Phosphorylation
T28287 346-349 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T28286 293-296 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T28285 30-45 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

GO-MF

Id Subject Object Predicate Lexical cue
T28291 346-349 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T28290 293-296 http://purl.obolibrary.org/obo/GO_0050321 denotes GSK
T28289 30-45 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

GO-CC

Id Subject Object Predicate Lexical cue
T28293 190-195 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T28292 112-116 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

sentences

Id Subject Object Predicate Lexical cue
T28282 323-396 Sentence denotes Phosphorylation of the GSK fusion protein was visualized by western blot.
T28281 239-322 Sentence denotes The in vitro assay was performed in the presence of a GSK fusion protein substrate.
T28280 26-238 Sentence denotes Akt kinase activity was measured using the Akt kinase assay kit (nonradioactive) from Cell Signaling Technology. In brief, Myr-Akt was immunoprecipitated from L929 cells using anti-FLAG M2 magnetic beads (Sigma).
T28279 0-25 Sentence denotes In vitro Akt Kinase Assay
T375 0-25 Sentence denotes In vitro Akt Kinase Assay
T376 26-138 Sentence denotes Akt kinase activity was measured using the Akt kinase assay kit (nonradioactive) from Cell Signaling Technology.
T377 139-238 Sentence denotes In brief, Myr-Akt was immunoprecipitated from L929 cells using anti-FLAG M2 magnetic beads (Sigma).
T378 239-322 Sentence denotes The in vitro assay was performed in the presence of a GSK fusion protein substrate.
T379 323-396 Sentence denotes Phosphorylation of the GSK fusion protein was visualized by western blot.

simple1

Id Subject Object Predicate Lexical cue
T28295 149-156 Protein denotes Myr-Akt

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T28363 161-179 Binding denotes immunoprecipitated
T28362 149-156 Protein denotes Myr-Akt
R19678 T28362 T28363 themeOf Myr-Akt,immunoprecipitated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T28380 161-179 Binding denotes immunoprecipitated
T28379 149-156 Protein denotes Myr-Akt
R19680 T28379 T28380 themeOf Myr-Akt,immunoprecipitated

DLUT931

Id Subject Object Predicate Lexical cue
T28377 161-179 Binding denotes immunoprecipitated
T28376 149-156 Protein denotes Myr-Akt
R19679 T28376 T28377 themeOf Myr-Akt,immunoprecipitated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T28409 304-321 Protein denotes protein substrate
T28408 69-72 Protein denotes Akt
T28407 9-12 Protein denotes Akt
T28406 149-156 Protein denotes Myr-Akt
T28405 212-214 Entity denotes M2
T28404 339-364 Protein denotes of the GSK fusion protein
T28403 0-25 Protein denotes In vitro Akt Kinase Assay
T28402 26-29 Protein denotes Akt
T28401 112-137 Entity denotes Cell Signaling Technology
T28400 73-79 Protein denotes kinase
T28399 231-236 Protein denotes Sigma
T28398 26-36 Protein denotes Akt kinase
T28397 304-321 Entity denotes protein substrate

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T28423 73-79 NN denotes kinase
T28479 395-396 . denotes .
T28478 391-395 NN denotes blot
T28477 383-390 JJ denotes western
T28476 380-382 IN denotes by
T28475 369-379 VBN denotes visualized
T28474 365-368 VBD denotes was
T28473 357-364 NN denotes protein
T28472 350-356 NN denotes fusion
T28471 346-349 NNP denotes GSK
T28470 342-345 DT denotes the
T28469 339-341 IN denotes of
T28468 323-338 NNP denotes Phosphorylation
T28467 321-322 . denotes .
T28466 312-321 NN denotes substrate
T28465 304-311 NN denotes protein
T28464 297-303 NN denotes fusion
T28463 293-296 NNP denotes GSK
T28462 291-292 DT denotes a
T28461 288-290 IN denotes of
T28460 279-287 NN denotes presence
T28459 275-278 DT denotes the
T28458 272-274 IN denotes in
T28457 262-271 VBN denotes performed
T28456 258-261 VBD denotes was
T28455 252-257 NN denotes assay
T28454 246-251 NN denotes vitro
T28453 243-245 IN denotes in
T28452 239-242 DT denotes The
T28451 237-238 . denotes .
T28450 236-237 -RRB- denotes )
T28449 231-236 NNP denotes Sigma
T28448 230-231 -LRB- denotes (
T28447 224-229 NNS denotes beads
T28446 215-223 JJ denotes magnetic
T28445 212-214 NN denotes M2
T28444 202-211 JJ denotes anti-FLAG
T28443 196-201 VBG denotes using
T28442 190-195 NNS denotes cells
T28441 185-189 CD denotes L929
T28440 180-184 IN denotes from
T28439 161-179 VBN denotes immunoprecipitated
T28438 157-160 VBD denotes was
T28437 149-156 NNP denotes Myr-Akt
T28436 147-148 , denotes ,
T28435 142-147 NN denotes brief
T28434 139-141 IN denotes In
T28433 137-138 . denotes .
T28432 127-137 NNP denotes Technology
T28431 117-126 NNP denotes Signaling
T28430 112-116 NNP denotes Cell
T28429 107-111 IN denotes from
T28428 105-106 -RRB- denotes )
T28427 91-105 JJ denotes nonradioactive
T28426 90-91 -LRB- denotes (
T28425 86-89 NN denotes kit
T28424 80-85 NN denotes assay
T28422 69-72 NNP denotes Akt
T28421 65-68 DT denotes the
T28420 59-64 VBG denotes using
T28419 50-58 VBN denotes measured
T28418 46-49 VBD denotes was
T28417 37-45 NN denotes activity
T28416 30-36 NN denotes kinase
T28415 26-29 NNP denotes Akt
T28414 20-25 NNP denotes Assay
T28413 13-19 NNP denotes Kinase
T28412 9-12 NNP denotes Akt
T28411 3-8 NN denotes vitro
T28410 0-2 IN denotes In
R19683 T28410 T28419 prep In,measured
R19684 T28411 T28417 amod vitro,activity
R19685 T28412 T28417 compound Akt,activity
R19686 T28413 T28417 compound Kinase,activity
R19687 T28414 T28417 compound Assay,activity
R19688 T28415 T28417 compound Akt,activity
R19689 T28416 T28417 compound kinase,activity
R19690 T28417 T28410 pobj activity,In
R19691 T28418 T28419 auxpass was,measured
R19692 T28419 T28419 ROOT measured,measured
R19693 T28420 T28419 advcl using,measured
R19694 T28421 T28425 det the,kit
R19695 T28422 T28425 compound Akt,kit
R19696 T28423 T28424 compound kinase,assay
R19697 T28424 T28425 compound assay,kit
R19698 T28425 T28420 dobj kit,using
R19699 T28426 T28425 punct (,kit
R19700 T28427 T28425 appos nonradioactive,kit
R19701 T28428 T28425 punct ),kit
R19702 T28429 T28420 prep from,using
R19703 T28430 T28432 compound Cell,Technology
R19704 T28431 T28432 compound Signaling,Technology
R19705 T28432 T28429 pobj Technology,from
R19706 T28433 T28419 punct .,measured
R19707 T28434 T28439 prep In,immunoprecipitated
R19708 T28435 T28434 pobj brief,In
R19709 T28436 T28439 punct ",",immunoprecipitated
R19710 T28437 T28439 nsubjpass Myr-Akt,immunoprecipitated
R19711 T28438 T28439 auxpass was,immunoprecipitated
R19712 T28439 T28439 ROOT immunoprecipitated,immunoprecipitated
R19713 T28440 T28439 prep from,immunoprecipitated
R19714 T28441 T28442 nummod L929,cells
R19715 T28442 T28440 pobj cells,from
R19716 T28443 T28439 advcl using,immunoprecipitated
R19717 T28444 T28447 amod anti-FLAG,beads
R19718 T28445 T28447 nmod M2,beads
R19719 T28446 T28447 amod magnetic,beads
R19720 T28447 T28443 dobj beads,using
R19721 T28448 T28447 punct (,beads
R19722 T28449 T28447 appos Sigma,beads
R19723 T28450 T28447 punct ),beads
R19724 T28451 T28439 punct .,immunoprecipitated
R19725 T28452 T28455 det The,assay
R19726 T28453 T28455 nmod in,assay
R19727 T28454 T28455 amod vitro,assay
R19728 T28455 T28457 nsubjpass assay,performed
R19729 T28456 T28457 auxpass was,performed
R19730 T28457 T28457 ROOT performed,performed
R19731 T28458 T28457 prep in,performed
R19732 T28459 T28460 det the,presence
R19733 T28460 T28458 pobj presence,in
R19734 T28461 T28460 prep of,presence
R19735 T28462 T28466 det a,substrate
R19736 T28463 T28465 compound GSK,protein
R19737 T28464 T28465 compound fusion,protein
R19738 T28465 T28466 compound protein,substrate
R19739 T28466 T28461 pobj substrate,of
R19740 T28467 T28457 punct .,performed
R19741 T28468 T28475 nsubjpass Phosphorylation,visualized
R19742 T28469 T28468 prep of,Phosphorylation
R19743 T28470 T28473 det the,protein
R19744 T28471 T28473 compound GSK,protein
R19745 T28472 T28473 compound fusion,protein
R19746 T28473 T28469 pobj protein,of
R19747 T28474 T28475 auxpass was,visualized
R19748 T28475 T28475 ROOT visualized,visualized
R19749 T28476 T28475 agent by,visualized
R19750 T28477 T28478 amod western,blot
R19751 T28478 T28476 pobj blot,by
R19752 T28479 T28475 punct .,visualized

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T28388 323-338 Phosphorylation denotes Phosphorylation
T28387 346-364 Protein denotes GSK fusion protein
T28386 293-311 Protein denotes GSK fusion protein
T28385 153-156 Protein denotes Akt
T28384 149-152 Protein denotes Myr
T28383 69-79 Protein denotes Akt kinase
T28382 26-36 Protein denotes Akt kinase
T28381 9-19 Protein denotes Akt Kinase
R19681 T28387 T28388 themeOf GSK fusion protein,Phosphorylation

test3

Id Subject Object Predicate Lexical cue
T28278 149-156 Protein denotes Myr-Akt
T28277 149-156 Protein denotes Myr-Akt