PMC:3585731 / 569-722 JSONTXT

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    testone

    {"project":"testone","denotations":[{"id":"T26","span":{"begin":113,"end":128},"obj":"Phosphorylation"},{"id":"T25","span":{"begin":83,"end":92},"obj":"Regulation"},{"id":"T24","span":{"begin":63,"end":72},"obj":"Positive_regulation"},{"id":"T23","span":{"begin":24,"end":34},"obj":"Gene_expression"},{"id":"T22","span":{"begin":11,"end":15},"obj":"Regulation"},{"id":"T16","span":{"begin":78,"end":82},"obj":"Protein"},{"id":"T15","span":{"begin":19,"end":23},"obj":"Protein"}],"relations":[{"id":"R5","pred":"themeOf","subj":"T23","obj":"T22"},{"id":"R2","pred":"themeOf","subj":"T15","obj":"T23"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T254","span":{"begin":148,"end":153},"obj":"NN"},{"id":"T253","span":{"begin":143,"end":147},"obj":"NN"},{"id":"T252","span":{"begin":140,"end":142},"obj":"IN"},{"id":"T251","span":{"begin":132,"end":138},"obj":"NN"},{"id":"T250","span":{"begin":129,"end":131},"obj":"IN"},{"id":"T249","span":{"begin":113,"end":128},"obj":"NN"},{"id":"T248","span":{"begin":109,"end":112},"obj":"PRP-DOLLAR-"},{"id":"T247","span":{"begin":101,"end":108},"obj":"IN"},{"id":"T246","span":{"begin":93,"end":100},"obj":"NN"},{"id":"T245","span":{"begin":83,"end":92},"obj":"JJ"},{"id":"T244","span":{"begin":78,"end":82},"obj":"NN"},{"id":"T243","span":{"begin":76,"end":77},"obj":"DT"},{"id":"T242","span":{"begin":73,"end":75},"obj":"IN"},{"id":"T241","span":{"begin":63,"end":72},"obj":"VB"},{"id":"T240","span":{"begin":60,"end":62},"obj":"VB"},{"id":"T239","span":{"begin":56,"end":59},"obj":"NN"},{"id":"T238","span":{"begin":54,"end":55},"obj":"-COMMA-"},{"id":"T237","span":{"begin":43,"end":54},"obj":"NN"},{"id":"T236","span":{"begin":36,"end":42},"obj":"IN"},{"id":"T235","span":{"begin":24,"end":34},"obj":"NN"},{"id":"T234","span":{"begin":19,"end":23},"obj":"NN"},{"id":"T233","span":{"begin":16,"end":18},"obj":"IN"},{"id":"T232","span":{"begin":11,"end":15},"obj":"NN"},{"id":"T231","span":{"begin":7,"end":10},"obj":"JJ"},{"id":"T230","span":{"begin":5,"end":6},"obj":"DT"}],"relations":[{"id":"R94","pred":"arg1Of","subj":"T232","obj":"T230"},{"id":"R95","pred":"arg1Of","subj":"T232","obj":"T231"},{"id":"R96","pred":"arg2Of","subj":"T235","obj":"T233"},{"id":"R97","pred":"arg1Of","subj":"T235","obj":"T234"},{"id":"R98","pred":"arg2Of","subj":"T237","obj":"T236"},{"id":"R99","pred":"arg1Of","subj":"T239","obj":"T240"},{"id":"R100","pred":"arg2Of","subj":"T239","obj":"T241"},{"id":"R101","pred":"arg1Of","subj":"T241","obj":"T236"},{"id":"R102","pred":"arg1Of","subj":"T241","obj":"T238"},{"id":"R103","pred":"arg2Of","subj":"T241","obj":"T240"},{"id":"R104","pred":"arg1Of","subj":"T241","obj":"T242"},{"id":"R105","pred":"arg1Of","subj":"T241","obj":"T247"},{"id":"R106","pred":"arg1Of","subj":"T245","obj":"T244"},{"id":"R107","pred":"arg2Of","subj":"T246","obj":"T242"},{"id":"R108","pred":"arg1Of","subj":"T246","obj":"T243"},{"id":"R109","pred":"arg1Of","subj":"T246","obj":"T245"},{"id":"R110","pred":"arg2Of","subj":"T249","obj":"T247"},{"id":"R111","pred":"arg1Of","subj":"T249","obj":"T248"},{"id":"R112","pred":"arg1Of","subj":"T249","obj":"T250"},{"id":"R113","pred":"arg2Of","subj":"T251","obj":"T250"},{"id":"R114","pred":"arg2Of","subj":"T254","obj":"T252"},{"id":"R115","pred":"arg1Of","subj":"T254","obj":"T253"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T92","span":{"begin":19,"end":23},"obj":"Protein"},{"id":"T93","span":{"begin":78,"end":82},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T407","span":{"begin":78,"end":82},"obj":"http://www.uniprot.org/uniprot/Q13546"},{"id":"T402","span":{"begin":19,"end":23},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T396","span":{"begin":56,"end":59},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T389","span":{"begin":56,"end":59},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T382","span":{"begin":56,"end":59},"obj":"http://www.uniprot.org/uniprot/P31749"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T130","span":{"begin":113,"end":128},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T111","span":{"begin":43,"end":54},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T103","span":{"begin":43,"end":54},"obj":"http://purl.obolibrary.org/obo/GO_0070266"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    sentences

    {"project":"sentences","denotations":[{"id":"T64","span":{"begin":36,"end":139},"obj":"Sentence"},{"id":"T7","span":{"begin":36,"end":139},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    simple1

    {"project":"simple1","denotations":[{"id":"T147","span":{"begin":19,"end":23},"obj":"Protein"},{"id":"T148","span":{"begin":78,"end":82},"obj":"Protein"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T357","span":{"begin":19,"end":23},"obj":"Protein"},{"id":"T358","span":{"begin":78,"end":82},"obj":"Protein"},{"id":"T366","span":{"begin":11,"end":15},"obj":"Regulation"},{"id":"T367","span":{"begin":24,"end":34},"obj":"Gene_expression"}],"relations":[{"id":"R452","pred":"themeOf","subj":"T357","obj":"T367"},{"id":"R456","pred":"themeOf","subj":"T367","obj":"T366"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T445","span":{"begin":19,"end":23},"obj":"Protein"},{"id":"T446","span":{"begin":78,"end":82},"obj":"Protein"},{"id":"T454","span":{"begin":24,"end":34},"obj":"Gene_expression"}],"relations":[{"id":"R471","pred":"themeOf","subj":"T445","obj":"T454"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T424","span":{"begin":11,"end":15},"obj":"Regulation"},{"id":"T414","span":{"begin":19,"end":23},"obj":"Protein"},{"id":"T415","span":{"begin":78,"end":82},"obj":"Protein"},{"id":"T423","span":{"begin":24,"end":34},"obj":"Gene_expression"}],"relations":[{"id":"R459","pred":"themeOf","subj":"T414","obj":"T423"},{"id":"R463","pred":"themeOf","subj":"T423","obj":"T424"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T764","span":{"begin":19,"end":34},"obj":"Gene_expression"},{"id":"T758","span":{"begin":36,"end":138},"obj":"Phosphorylation"},{"id":"T757","span":{"begin":36,"end":138},"obj":"Positive_regulation"},{"id":"T745","span":{"begin":78,"end":92},"obj":"Protein"},{"id":"T737","span":{"begin":129,"end":138},"obj":"Entity"},{"id":"T734","span":{"begin":19,"end":23},"obj":"Protein"},{"id":"T729","span":{"begin":56,"end":59},"obj":"Protein"}],"relations":[{"id":"R433","pred":"siteOf","subj":"T737","obj":"T758"},{"id":"R429","pred":"themeOf","subj":"T729","obj":"T757"},{"id":"R430","pred":"themeOf","subj":"T729","obj":"T758"},{"id":"R431","pred":"themeOf","subj":"T734","obj":"T764"},{"id":"R432","pred":"partOf","subj":"T737","obj":"T729"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T573","span":{"begin":36,"end":42},"obj":"IN"},{"id":"T572","span":{"begin":34,"end":35},"obj":"."},{"id":"T571","span":{"begin":24,"end":34},"obj":"NN"},{"id":"T570","span":{"begin":19,"end":23},"obj":"JJ"},{"id":"T569","span":{"begin":16,"end":18},"obj":"IN"},{"id":"T568","span":{"begin":11,"end":15},"obj":"NN"},{"id":"T567","span":{"begin":7,"end":10},"obj":"JJ"},{"id":"T566","span":{"begin":5,"end":6},"obj":"DT"},{"id":"T592","span":{"begin":148,"end":153},"obj":"NNS"},{"id":"T591","span":{"begin":143,"end":147},"obj":"CD"},{"id":"T590","span":{"begin":140,"end":142},"obj":"IN"},{"id":"T589","span":{"begin":138,"end":139},"obj":"."},{"id":"T588","span":{"begin":132,"end":138},"obj":"NNP"},{"id":"T587","span":{"begin":129,"end":131},"obj":"IN"},{"id":"T586","span":{"begin":113,"end":128},"obj":"NN"},{"id":"T585","span":{"begin":109,"end":112},"obj":"PRP$"},{"id":"T584","span":{"begin":101,"end":108},"obj":"IN"},{"id":"T583","span":{"begin":93,"end":100},"obj":"NN"},{"id":"T582","span":{"begin":83,"end":92},"obj":"JJ"},{"id":"T581","span":{"begin":78,"end":82},"obj":"NNP"},{"id":"T580","span":{"begin":76,"end":77},"obj":"DT"},{"id":"T579","span":{"begin":73,"end":75},"obj":"IN"},{"id":"T578","span":{"begin":63,"end":72},"obj":"VBN"},{"id":"T577","span":{"begin":60,"end":62},"obj":"VBZ"},{"id":"T576","span":{"begin":56,"end":59},"obj":"NNP"},{"id":"T575","span":{"begin":54,"end":55},"obj":","},{"id":"T574","span":{"begin":43,"end":54},"obj":"NN"}],"relations":[{"id":"R306","pred":"det","subj":"T566","obj":"T568"},{"id":"R307","pred":"amod","subj":"T567","obj":"T568"},{"id":"R309","pred":"prep","subj":"T569","obj":"T568"},{"id":"R310","pred":"amod","subj":"T570","obj":"T571"},{"id":"R311","pred":"pobj","subj":"T571","obj":"T569"},{"id":"R313","pred":"prep","subj":"T573","obj":"T578"},{"id":"R314","pred":"pobj","subj":"T574","obj":"T573"},{"id":"R315","pred":"punct","subj":"T575","obj":"T578"},{"id":"R316","pred":"nsubjpass","subj":"T576","obj":"T578"},{"id":"R317","pred":"auxpass","subj":"T577","obj":"T578"},{"id":"R318","pred":"ROOT","subj":"T578","obj":"T578"},{"id":"R319","pred":"prep","subj":"T579","obj":"T578"},{"id":"R320","pred":"det","subj":"T580","obj":"T583"},{"id":"R321","pred":"nmod","subj":"T581","obj":"T583"},{"id":"R322","pred":"amod","subj":"T582","obj":"T583"},{"id":"R323","pred":"pobj","subj":"T583","obj":"T579"},{"id":"R324","pred":"prep","subj":"T584","obj":"T578"},{"id":"R325","pred":"poss","subj":"T585","obj":"T586"},{"id":"R326","pred":"pobj","subj":"T586","obj":"T584"},{"id":"R327","pred":"prep","subj":"T587","obj":"T586"},{"id":"R328","pred":"pobj","subj":"T588","obj":"T587"},{"id":"R329","pred":"punct","subj":"T589","obj":"T578"},{"id":"R331","pred":"nummod","subj":"T591","obj":"T592"},{"id":"R332","pred":"pobj","subj":"T592","obj":"T590"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T474","span":{"begin":63,"end":72},"obj":"Positive_regulation"},{"id":"T473","span":{"begin":113,"end":128},"obj":"Phosphorylation"},{"id":"T472","span":{"begin":63,"end":72},"obj":"Positive_regulation"},{"id":"T471","span":{"begin":132,"end":138},"obj":"Protein"},{"id":"T470","span":{"begin":78,"end":82},"obj":"Protein"},{"id":"T469","span":{"begin":56,"end":59},"obj":"Protein"},{"id":"T468","span":{"begin":24,"end":34},"obj":"Gene_expression"},{"id":"T467","span":{"begin":19,"end":23},"obj":"Protein"}],"relations":[{"id":"R218","pred":"themeOf","subj":"T467","obj":"T468"},{"id":"R219","pred":"themeOf","subj":"T469","obj":"T472"},{"id":"R220","pred":"themeOf","subj":"T471","obj":"T473"},{"id":"R221","pred":"themeOf","subj":"T473","obj":"T474"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}

    test3

    {"project":"test3","denotations":[{"id":"T51","span":{"begin":113,"end":128},"obj":"Phosphorylation"},{"id":"T50","span":{"begin":78,"end":82},"obj":"Protein"},{"id":"T49","span":{"begin":63,"end":72},"obj":"Positive_regulation"},{"id":"T48","span":{"begin":24,"end":34},"obj":"Gene_expression"},{"id":"T47","span":{"begin":19,"end":23},"obj":"Protein"},{"id":"T46","span":{"begin":11,"end":15},"obj":"Regulation"},{"id":"T34","span":{"begin":78,"end":82},"obj":"Protein"},{"id":"T33","span":{"begin":19,"end":23},"obj":"Protein"}],"relations":[{"id":"R10","pred":"themeOf","subj":"T47","obj":"T48"},{"id":"R11","pred":"themeOf","subj":"T48","obj":"T46"},{"id":"R12","pred":"themeOf","subj":"T50","obj":"T49"}],"text":"lays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells"}