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PMC:3585731 / 569-722 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T26 113-128 Phosphorylation denotes phosphorylation
T25 83-92 Regulation denotes dependent
T24 63-72 Positive_regulation denotes activated
T23 24-34 Gene_expression denotes production
T22 11-15 Regulation denotes role
T16 78-82 Protein denotes RIP1
T15 19-23 Protein denotes TNFα
R5 T23 T22 themeOf production,role
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T254 148-153 NN denotes cells
T253 143-147 NN denotes L929
T252 140-142 IN denotes In
T251 132-138 NN denotes Thr308
T250 129-131 IN denotes on
T249 113-128 NN denotes phosphorylation
T248 109-112 PRP-DOLLAR- denotes its
T247 101-108 IN denotes through
T246 93-100 NN denotes fashion
T245 83-92 JJ denotes dependent
T244 78-82 NN denotes RIP1
T243 76-77 DT denotes a
T242 73-75 IN denotes in
T241 63-72 VB denotes activated
T240 60-62 VB denotes is
T239 56-59 NN denotes Akt
T238 54-55 -COMMA- denotes ,
T237 43-54 NN denotes necroptosis
T236 36-42 IN denotes During
T235 24-34 NN denotes production
T234 19-23 NN denotes TNFα
T233 16-18 IN denotes in
T232 11-15 NN denotes role
T231 7-10 JJ denotes key
T230 5-6 DT denotes a
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα
R98 T237 T236 arg2Of necroptosis,During
R99 T239 T240 arg1Of Akt,is
R100 T239 T241 arg2Of Akt,activated
R101 T241 T236 arg1Of activated,During
R102 T241 T238 arg1Of activated,","
R103 T241 T240 arg2Of activated,is
R104 T241 T242 arg1Of activated,in
R105 T241 T247 arg1Of activated,through
R106 T245 T244 arg1Of dependent,RIP1
R107 T246 T242 arg2Of fashion,in
R108 T246 T243 arg1Of fashion,a
R109 T246 T245 arg1Of fashion,dependent
R110 T249 T247 arg2Of phosphorylation,through
R111 T249 T248 arg1Of phosphorylation,its
R112 T249 T250 arg1Of phosphorylation,on
R113 T251 T250 arg2Of Thr308,on
R114 T254 T252 arg2Of cells,In
R115 T254 T253 arg1Of cells,L929

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T92 19-23 Protein denotes TNFα
T93 78-82 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T407 78-82 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 19-23 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T396 56-59 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T389 56-59 http://www.uniprot.org/uniprot/P31751 denotes Akt
T382 56-59 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T130 113-128 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T111 43-54 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T103 43-54 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T64 36-139 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.
T7 36-139 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.

simple1

Id Subject Object Predicate Lexical cue
T147 19-23 Protein denotes TNFα
T148 78-82 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T357 19-23 Protein denotes TNFα
T358 78-82 Protein denotes RIP1
T366 11-15 Regulation denotes role
T367 24-34 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 19-23 Protein denotes TNFα
T446 78-82 Protein denotes RIP1
T454 24-34 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T424 11-15 Regulation denotes role
T414 19-23 Protein denotes TNFα
T415 78-82 Protein denotes RIP1
T423 24-34 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 19-34 Gene_expression denotes TNFα production
T758 36-138 Phosphorylation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T757 36-138 Positive_regulation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T745 78-92 Protein denotes RIP1 dependent
T737 129-138 Entity denotes on Thr308
T734 19-23 Protein denotes TNFα
T729 56-59 Protein denotes Akt
R433 T737 T758 siteOf on Thr308,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R429 T729 T757 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R430 T729 T758 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R431 T734 T764 themeOf TNFα,TNFα production
R432 T737 T729 partOf on Thr308,Akt

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T573 36-42 IN denotes During
T572 34-35 . denotes .
T571 24-34 NN denotes production
T570 19-23 JJ denotes TNFα
T569 16-18 IN denotes in
T568 11-15 NN denotes role
T567 7-10 JJ denotes key
T566 5-6 DT denotes a
T592 148-153 NNS denotes cells
T591 143-147 CD denotes L929
T590 140-142 IN denotes In
T589 138-139 . denotes .
T588 132-138 NNP denotes Thr308
T587 129-131 IN denotes on
T586 113-128 NN denotes phosphorylation
T585 109-112 PRP$ denotes its
T584 101-108 IN denotes through
T583 93-100 NN denotes fashion
T582 83-92 JJ denotes dependent
T581 78-82 NNP denotes RIP1
T580 76-77 DT denotes a
T579 73-75 IN denotes in
T578 63-72 VBN denotes activated
T577 60-62 VBZ denotes is
T576 56-59 NNP denotes Akt
T575 54-55 , denotes ,
T574 43-54 NN denotes necroptosis
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R313 T573 T578 prep During,activated
R314 T574 T573 pobj necroptosis,During
R315 T575 T578 punct ",",activated
R316 T576 T578 nsubjpass Akt,activated
R317 T577 T578 auxpass is,activated
R318 T578 T578 ROOT activated,activated
R319 T579 T578 prep in,activated
R320 T580 T583 det a,fashion
R321 T581 T583 nmod RIP1,fashion
R322 T582 T583 amod dependent,fashion
R323 T583 T579 pobj fashion,in
R324 T584 T578 prep through,activated
R325 T585 T586 poss its,phosphorylation
R326 T586 T584 pobj phosphorylation,through
R327 T587 T586 prep on,phosphorylation
R328 T588 T587 pobj Thr308,on
R329 T589 T578 punct .,activated
R331 T591 T592 nummod L929,cells
R332 T592 T590 pobj cells,In

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T474 63-72 Positive_regulation denotes activated
T473 113-128 Phosphorylation denotes phosphorylation
T472 63-72 Positive_regulation denotes activated
T471 132-138 Protein denotes Thr308
T470 78-82 Protein denotes RIP1
T469 56-59 Protein denotes Akt
T468 24-34 Gene_expression denotes production
T467 19-23 Protein denotes TNFα
R218 T467 T468 themeOf TNFα,production
R219 T469 T472 themeOf Akt,activated
R220 T471 T473 themeOf Thr308,phosphorylation
R221 T473 T474 themeOf phosphorylation,activated

test3

Id Subject Object Predicate Lexical cue
T51 113-128 Phosphorylation denotes phosphorylation
T50 78-82 Protein denotes RIP1
T49 63-72 Positive_regulation denotes activated
T48 24-34 Gene_expression denotes production
T47 19-23 Protein denotes TNFα
T46 11-15 Regulation denotes role
T34 78-82 Protein denotes RIP1
T33 19-23 Protein denotes TNFα
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role
R12 T50 T49 themeOf RIP1,activated