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PMC:3585731 / 56076-56510 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T27772 20-28 Protein denotes Myr-Akt1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27857 424-433 NN denotes puromycin
T27856 418-423 NN denotes µg/ml
T27855 415-417 CD denotes 10
T27854 412-414 IN denotes in
T27853 401-411 VB denotes maintained
T27852 397-400 CC denotes and
T27851 388-396 VB denotes selected
T27850 383-387 VB denotes were
T27849 377-382 NN denotes Cells
T27848 366-375 NN denotes polybrene
T27847 360-365 NN denotes µg/ml
T27846 358-359 CD denotes 8
T27845 353-357 IN denotes with
T27844 347-352 NN denotes cells
T27843 342-346 NN denotes L929
T27842 339-341 TO denotes to
T27841 331-338 VB denotes applied
T27840 327-330 CC denotes and
T27839 320-326 NN denotes filter
T27838 317-319 NN denotes µm
T27837 312-316 CD denotes 0.45
T27836 304-311 IN denotes through
T27835 295-303 VB denotes filtered
T27834 293-294 -COMMA- denotes ,
T27833 288-293 RB denotes later
T27832 285-287 NN denotes hr
T27831 282-284 CD denotes 72
T27830 272-281 VB denotes collected
T27829 268-271 VB denotes was
T27828 262-267 NN denotes media
T27827 245-261 JJ denotes Virus-containing
T27826 242-243 -RRB- denotes )
T27825 238-242 NN denotes Labs
T27824 229-237 NN denotes Signagen
T27823 228-229 -LRB- denotes (
T27822 220-227 NN denotes reagent
T27821 207-219 NN denotes transfection
T27820 200-206 NN denotes GenJet
T27819 194-199 VB denotes using
T27818 187-193 VB denotes plates
T27817 182-186 RB denotes well
T27816 180-181 CD denotes 6
T27815 177-179 IN denotes in
T27814 168-176 NN denotes plasmids
T27813 158-167 JJ denotes accessory
T27812 152-157 JJ denotes VSV-G
T27811 148-151 CC denotes and
T27810 140-147 NN denotes gal/pol
T27809 137-139 IN denotes of
T27808 134-136 NN denotes µg
T27807 132-133 CD denotes 1
T27806 128-131 CC denotes and
T27805 124-127 NN denotes DNA
T27804 118-123 JJ denotes viral
T27803 115-117 IN denotes of
T27802 112-114 NN denotes µg
T27801 110-111 CD denotes 2
T27800 105-109 IN denotes with
T27799 93-104 VB denotes transfected
T27798 88-92 VB denotes were
T27797 86-87 -RRB- denotes )
T27796 76-86 NN denotes Invitrogen
T27795 75-76 -LRB- denotes (
T27794 69-74 NN denotes cells
T27793 60-68 NN denotes HEK293FT
T27792 58-59 -COMMA- denotes ,
T27791 46-58 NN denotes retroviruses
T27790 41-45 NN denotes MSCV
T27789 32-40 VB denotes generate
T27788 29-31 TO denotes To
T27787 20-28 NN denotes Myr-Akt1
T27786 17-19 IN denotes of
T27785 7-16 NN denotes Infection
T27784 0-6 JJ denotes Stable
R19206 T27785 T27784 arg1Of Infection,Stable
R19207 T27785 T27786 arg1Of Infection,of
R19208 T27787 T27786 arg2Of Myr-Akt1,of
R19209 T27789 T27788 arg1Of generate,To
R19210 T27791 T27789 arg2Of retroviruses,generate
R19211 T27791 T27790 arg1Of retroviruses,MSCV
R19212 T27794 T27789 arg1Of cells,generate
R19213 T27794 T27793 arg1Of cells,HEK293FT
R19214 T27794 T27795 arg1Of cells,(
R19215 T27794 T27798 arg1Of cells,were
R19216 T27794 T27799 arg2Of cells,transfected
R19217 T27796 T27795 arg2Of Invitrogen,(
R19218 T27797 T27795 arg3Of ),(
R19219 T27799 T27798 arg2Of transfected,were
R19220 T27799 T27800 arg1Of transfected,with
R19221 T27799 T27806 arg1Of transfected,and
R19222 T27802 T27800 arg2Of µg,with
R19223 T27802 T27801 arg1Of µg,2
R19224 T27802 T27803 arg1Of µg,of
R19225 T27805 T27803 arg2Of DNA,of
R19226 T27805 T27804 arg1Of DNA,viral
R19227 T27806 T27788 modOf and,To
R19228 T27806 T27792 arg1Of and,","
R19229 T27808 T27807 arg1Of µg,1
R19230 T27808 T27809 arg1Of µg,of
R19231 T27808 T27815 arg1Of µg,in
R19232 T27808 T27818 arg1Of µg,plates
R19233 T27808 T27819 arg1Of µg,using
R19234 T27810 T27811 arg1Of gal/pol,and
R19235 T27813 T27811 arg2Of accessory,and
R19236 T27813 T27812 arg1Of accessory,VSV-G
R19237 T27814 T27809 arg2Of plasmids,of
R19238 T27814 T27810 arg1Of plasmids,gal/pol
R19239 T27814 T27813 arg1Of plasmids,accessory
R19240 T27816 T27815 arg2Of 6,in
R19241 T27818 T27806 arg2Of plates,and
R19242 T27818 T27817 arg1Of plates,well
R19243 T27819 T27818 arg2Of using,plates
R19244 T27822 T27819 arg2Of reagent,using
R19245 T27822 T27820 arg1Of reagent,GenJet
R19246 T27822 T27821 arg1Of reagent,transfection
R19247 T27822 T27823 arg1Of reagent,(
R19248 T27825 T27823 arg2Of Labs,(
R19249 T27825 T27824 arg1Of Labs,Signagen
R19250 T27826 T27823 arg3Of ),(
R19251 T27828 T27827 arg1Of media,Virus-containing
R19252 T27828 T27829 arg1Of media,was
R19253 T27828 T27830 arg2Of media,collected
R19254 T27828 T27835 arg2Of media,filtered
R19255 T27828 T27841 arg2Of media,applied
R19256 T27830 T27832 arg1Of collected,hr
R19257 T27830 T27833 arg1Of collected,later
R19258 T27830 T27834 arg1Of collected,","
R19259 T27832 T27831 arg1Of hr,72
R19260 T27834 T27840 arg1Of ",",and
R19261 T27835 T27834 arg2Of filtered,","
R19262 T27835 T27836 arg1Of filtered,through
R19263 T27837 T27838 arg1Of 0.45,µm
R19264 T27839 T27836 arg2Of filter,through
R19265 T27839 T27837 arg1Of filter,0.45
R19266 T27840 T27829 arg2Of and,was
R19267 T27841 T27840 arg2Of applied,and
R19268 T27841 T27842 arg1Of applied,to
R19269 T27844 T27842 arg2Of cells,to
R19270 T27844 T27843 arg1Of cells,L929
R19271 T27844 T27845 arg1Of cells,with
R19272 T27848 T27845 arg2Of polybrene,with
R19273 T27848 T27846 arg1Of polybrene,8
R19274 T27848 T27847 arg1Of polybrene,µg/ml
R19275 T27849 T27850 arg1Of Cells,were
R19276 T27849 T27851 arg2Of Cells,selected
R19277 T27849 T27853 arg2Of Cells,maintained
R19278 T27851 T27852 arg1Of selected,and
R19279 T27852 T27850 arg2Of and,were
R19280 T27852 T27854 arg1Of and,in
R19281 T27853 T27852 arg2Of maintained,and
R19282 T27857 T27854 arg2Of puromycin,in
R19283 T27857 T27855 arg1Of puromycin,10
R19284 T27857 T27856 arg1Of puromycin,µg/ml

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T27779 20-28 Protein denotes Myr-Akt1

GO-CC

Id Subject Object Predicate Lexical cue
T27781 347-352 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27780 69-74 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T27777 377-434 Sentence denotes Cells were selected and maintained in 10 µg/ml puromycin.
T27776 245-376 Sentence denotes Virus-containing media was collected 72 hr later, filtered through 0.45 µm filter and applied to L929 cells with 8 µg/ml polybrene.
T27775 29-244 Sentence denotes To generate MSCV retroviruses, HEK293FT cells (Invitrogen) were transfected with 2 µg of viral DNA and 1 µg of gal/pol and VSV-G accessory plasmids in 6 well plates using GenJet transfection reagent (Signagen Labs).
T27774 0-28 Sentence denotes Stable Infection of Myr-Akt1
T361 0-28 Sentence denotes Stable Infection of Myr-Akt1
T362 29-244 Sentence denotes To generate MSCV retroviruses, HEK293FT cells (Invitrogen) were transfected with 2 µg of viral DNA and 1 µg of gal/pol and VSV-G accessory plasmids in 6 well plates using GenJet transfection reagent (Signagen Labs).
T363 245-376 Sentence denotes Virus-containing media was collected 72 hr later, filtered through 0.45 µm filter and applied to L929 cells with 8 µg/ml polybrene.
T364 377-434 Sentence denotes Cells were selected and maintained in 10 µg/ml puromycin.

simple1

Id Subject Object Predicate Lexical cue
T27783 20-28 Protein denotes Myr-Akt1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T27858 20-28 Protein denotes Myr-Akt1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T27861 20-28 Protein denotes Myr-Akt1

DLUT931

Id Subject Object Predicate Lexical cue
T27859 20-28 Protein denotes Myr-Akt1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T27877 0-28 Regulation denotes Stable Infection of Myr-Akt1
T27876 110-127 Entity denotes 2 µg of viral DNA
T27875 415-433 Entity denotes 10 µg/ml puromycin
T27874 60-87 Entity denotes HEK293FT cells (Invitrogen)
T27873 377-382 Entity denotes Cells
T27872 200-243 Entity denotes GenJet transfection reagent (Signagen Labs)
T27871 17-28 Protein denotes of Myr-Akt1
T27870 115-127 Entity denotes of viral DNA
T27869 358-375 Entity denotes 8 µg/ml polybrene
T27868 200-203 Protein denotes Gen
R19285 T27871 T27877 themeOf of Myr-Akt1,Stable Infection of Myr-Akt1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T27958 433-434 . denotes .
T27957 424-433 NN denotes puromycin
T27956 421-423 NN denotes ml
T27955 420-421 NN denotes /
T27954 418-420 NN denotes µg
T27953 415-417 CD denotes 10
T27952 412-414 IN denotes in
T27951 401-411 VBN denotes maintained
T27950 397-400 CC denotes and
T27949 388-396 VBN denotes selected
T27948 383-387 VBD denotes were
T27947 377-382 NNS denotes Cells
T27946 375-376 . denotes .
T27945 366-375 NN denotes polybrene
T27944 363-365 NN denotes ml
T27943 362-363 NN denotes /
T27942 360-362 NN denotes µg
T27941 358-359 CD denotes 8
T27940 353-357 IN denotes with
T27939 347-352 NNS denotes cells
T27938 342-346 CD denotes L929
T27937 339-341 TO denotes to
T27936 331-338 VBD denotes applied
T27935 327-330 CC denotes and
T27934 320-326 NN denotes filter
T27933 317-319 NN denotes µm
T27932 312-316 CD denotes 0.45
T27931 304-311 IN denotes through
T27930 295-303 VBN denotes filtered
T27929 293-294 , denotes ,
T27928 288-293 RB denotes later
T27927 285-287 NN denotes hr
T27926 282-284 CD denotes 72
T27925 272-281 VBN denotes collected
T27924 268-271 VBD denotes was
T27923 262-267 NNS denotes media
T27922 245-261 VBG denotes Virus-containing
T27921 243-244 . denotes .
T27920 242-243 -RRB- denotes )
T27919 238-242 NNPS denotes Labs
T27918 229-237 NNP denotes Signagen
T27917 228-229 -LRB- denotes (
T27916 220-227 NN denotes reagent
T27915 207-219 NN denotes transfection
T27914 200-206 NNP denotes GenJet
T27913 194-199 VBG denotes using
T27912 187-193 VBZ denotes plates
T27911 182-186 RB denotes well
T27910 180-181 CD denotes 6
T27909 177-179 IN denotes in
T27908 168-176 NNS denotes plasmids
T27907 158-167 JJ denotes accessory
T27906 152-157 NNP denotes VSV-G
T27905 148-151 CC denotes and
T27904 140-147 NN denotes gal/pol
T27903 137-139 IN denotes of
T27902 134-136 NN denotes µg
T27901 132-133 CD denotes 1
T27900 128-131 CC denotes and
T27899 124-127 NN denotes DNA
T27898 118-123 JJ denotes viral
T27897 115-117 IN denotes of
T27896 112-114 NN denotes µg
T27895 110-111 CD denotes 2
T27894 105-109 IN denotes with
T27893 93-104 VBN denotes transfected
T27892 88-92 VBD denotes were
T27891 86-87 -RRB- denotes )
T27890 76-86 NNP denotes Invitrogen
T27889 75-76 -LRB- denotes (
T27888 69-74 NNS denotes cells
T27887 60-68 JJ denotes HEK293FT
T27886 58-59 , denotes ,
T27885 46-58 NNS denotes retroviruses
T27884 41-45 NNP denotes MSCV
T27883 32-40 VB denotes generate
T27882 29-31 TO denotes To
T27881 20-28 NNP denotes Myr-Akt1
T27880 17-19 IN denotes of
T27879 7-16 NN denotes Infection
T27878 0-6 JJ denotes Stable
R19298 T27890 T27885 appos Invitrogen,retroviruses
R19299 T27891 T27883 punct ),generate
R19300 T27892 T27893 auxpass were,transfected
R19301 T27893 T27883 dep transfected,generate
R19302 T27894 T27893 prep with,transfected
R19303 T27895 T27896 nummod 2,µg
R19304 T27896 T27894 pobj µg,with
R19305 T27897 T27896 prep of,µg
R19306 T27898 T27899 amod viral,DNA
R19307 T27899 T27897 pobj DNA,of
R19308 T27900 T27896 cc and,µg
R19309 T27901 T27902 nummod 1,µg
R19310 T27902 T27896 conj µg,µg
R19311 T27903 T27902 prep of,µg
R19312 T27904 T27903 pobj gal/pol,of
R19313 T27905 T27904 cc and,gal/pol
R19314 T27906 T27908 compound VSV-G,plasmids
R19315 T27907 T27908 compound accessory,plasmids
R19316 T27908 T27902 conj plasmids,µg
R19317 T27909 T27908 prep in,plasmids
R19318 T27910 T27909 pobj 6,in
R19319 T27911 T27912 intj well,plates
R19320 T27912 T27893 conj plates,transfected
R19321 T27913 T27912 advcl using,plates
R19322 T27914 T27916 nmod GenJet,reagent
R19323 T27915 T27916 compound transfection,reagent
R19324 T27916 T27913 dobj reagent,using
R19325 T27917 T27919 punct (,Labs
R19326 T27918 T27919 compound Signagen,Labs
R19327 T27919 T27916 appos Labs,reagent
R19328 T27920 T27919 punct ),Labs
R19329 T27921 T27883 punct .,generate
R19330 T27922 T27923 amod Virus-containing,media
R19331 T27923 T27925 nsubjpass media,collected
R19332 T27924 T27925 auxpass was,collected
R19333 T27925 T27925 ROOT collected,collected
R19334 T27926 T27928 npadvmod 72,later
R19335 T27927 T27928 npadvmod hr,later
R19336 T27928 T27925 advmod later,collected
R19337 T27929 T27930 punct ",",filtered
R19338 T27930 T27925 advcl filtered,collected
R19339 T27931 T27930 prep through,filtered
R19340 T27932 T27934 nummod 0.45,filter
R19341 T27933 T27934 compound µm,filter
R19342 T27934 T27931 pobj filter,through
R19343 T27935 T27930 cc and,filtered
R19346 T27938 T27939 nummod L929,cells
R19347 T27939 T27937 pobj cells,to
R19348 T27940 T27936 prep with,applied
R19349 T27941 T27942 nummod 8,µg
R19350 T27942 T27945 amod µg,polybrene
R19351 T27943 T27945 nmod /,polybrene
R19352 T27944 T27945 compound ml,polybrene
R19353 T27945 T27940 pobj polybrene,with
R19354 T27946 T27925 punct .,collected
R19355 T27947 T27949 nsubjpass Cells,selected
R19356 T27948 T27949 auxpass were,selected
R19357 T27949 T27949 ROOT selected,selected
R19358 T27950 T27949 cc and,selected
R19359 T27951 T27949 conj maintained,selected
R19360 T27952 T27951 prep in,maintained
R19361 T27953 T27954 nummod 10,µg
R19362 T27954 T27957 compound µg,puromycin
R19363 T27955 T27957 compound /,puromycin
R19364 T27956 T27957 compound ml,puromycin
R19365 T27957 T27952 pobj puromycin,in
R19366 T27958 T27949 punct .,selected
R19286 T27878 T27879 compound Stable,Infection
R19287 T27879 T27883 nsubj Infection,generate
R19288 T27880 T27879 prep of,Infection
R19289 T27881 T27880 pobj Myr-Akt1,of
R19290 T27882 T27883 aux To,generate
R19291 T27883 T27883 ROOT generate,generate
R19292 T27884 T27885 compound MSCV,retroviruses
R19293 T27885 T27883 dobj retroviruses,generate
R19294 T27886 T27885 punct ",",retroviruses
R19295 T27887 T27888 amod HEK293FT,cells
R19296 T27888 T27885 conj cells,retroviruses
R19297 T27889 T27890 punct (,Invitrogen
R19344 T27936 T27930 conj applied,filtered
R19345 T27937 T27936 prep to,applied

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T27864 144-147 Protein denotes pol
T27863 140-143 Protein denotes gal
T27862 20-28 Protein denotes Myr-Akt1

test3

Id Subject Object Predicate Lexical cue
T27773 20-28 Protein denotes Myr-Akt1