> top > docs > PMC:3585731 > spans > 55700-56074 > annotations

PMC:3585731 / 55700-56074 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27675 307-316 NN denotes SYBRGreen
T27674 301-306 VB denotes using
T27673 292-300 NN denotes performs
T27672 287-291 VB denotes were
T27671 277-286 NN denotes Reactions
T27670 266-275 NN denotes reactions
T27669 261-265 NN denotes qPCR
T27668 258-260 IN denotes in
T27667 250-257 NN denotes primers
T27666 247-249 NN denotes pM
T27665 243-246 CD denotes 500
T27664 238-242 IN denotes with
T27663 233-237 VB denotes used
T27662 229-232 VB denotes was
T27661 224-228 NN denotes cDNA
T27660 221-223 IN denotes of
T27659 218-220 NN denotes µL
T27658 216-217 CD denotes 1
T27657 213-214 -RRB- denotes )
T27656 206-213 NNP denotes Biolabs
T27655 198-205 NNP denotes England
T27654 194-197 NNP denotes New
T27653 192-193 -COMMA- denotes ,
T27652 189-192 NN denotes kit
T27651 184-188 NN denotes cDNA
T27650 177-183 NN denotes M-MuLV
T27649 176-177 -LRB- denotes (
T27648 168-175 NN denotes primers
T27647 161-167 JJ denotes random
T27646 155-160 VB denotes using
T27645 150-154 NN denotes cDNA
T27644 147-149 TO denotes to
T27643 137-146 VB denotes converted
T27642 133-136 VB denotes was
T27641 129-132 NN denotes RNA
T27640 126-128 IN denotes of
T27639 123-125 NN denotes µg
T27638 121-122 CD denotes 1
T27637 118-119 -RRB- denotes )
T27636 110-118 NNP denotes Research
T27635 105-109 NNP denotes Zymo
T27634 104-105 -LRB- denotes (
T27633 100-103 NN denotes kit
T27632 91-99 NN denotes Miniprep
T27631 88-90 NN denotes ZR
T27630 82-87 VB denotes using
T27629 73-81 VB denotes isolated
T27628 69-72 VB denotes was
T27627 65-68 NN denotes RNA
T27626 59-64 JJ denotes Total
T27625 52-57 NN denotes blots
T27624 44-51 JJ denotes Western
T27623 40-43 IN denotes for
T27622 30-39 VB denotes described
T27621 27-29 IN denotes as
T27620 19-26 VB denotes treated
T27619 14-18 VB denotes were
T27618 8-13 NN denotes Cells
T27617 0-7 NN denotes qRT-PCR
T27686 372-373 -RRB- denotes )
T27685 367-372 NN denotes Roche
T27684 366-367 -LRB- denotes (
T27683 351-365 NN denotes LightCycler480
T27682 349-350 DT denotes a
T27681 346-348 IN denotes in
T27680 344-345 -RRB- denotes )
T27679 331-344 NN denotes SABiosciences
T27678 330-331 -LRB- denotes (
T27677 326-329 NN denotes mix
T27676 317-325 NN denotes 2×Master
R19061 T27618 T27619 arg1Of Cells,were
R19062 T27618 T27620 arg2Of Cells,treated
R19063 T27620 T27619 arg2Of treated,were
R19064 T27620 T27621 arg1Of treated,as
R19065 T27622 T27621 arg2Of described,as
R19066 T27622 T27623 arg1Of described,for
R19067 T27625 T27623 arg2Of blots,for
R19068 T27625 T27624 arg1Of blots,Western
R19069 T27627 T27626 arg1Of RNA,Total
R19070 T27627 T27628 arg1Of RNA,was
R19071 T27627 T27629 arg2Of RNA,isolated
R19072 T27629 T27628 arg2Of isolated,was
R19073 T27630 T27629 arg3Of using,isolated
R19074 T27633 T27630 arg2Of kit,using
R19075 T27633 T27631 arg1Of kit,ZR
R19076 T27633 T27632 arg1Of kit,Miniprep
R19077 T27633 T27634 arg1Of kit,(
R19078 T27636 T27634 arg2Of Research,(
R19079 T27636 T27635 arg1Of Research,Zymo
R19080 T27637 T27634 arg3Of ),(
R19081 T27639 T27638 arg1Of µg,1
R19082 T27639 T27640 arg1Of µg,of
R19083 T27639 T27642 arg1Of µg,was
R19084 T27639 T27643 arg2Of µg,converted
R19085 T27641 T27640 arg2Of RNA,of
R19086 T27643 T27642 arg2Of converted,was
R19087 T27643 T27644 arg1Of converted,to
R19088 T27645 T27644 arg2Of cDNA,to
R19089 T27645 T27646 arg1Of cDNA,using
R19090 T27648 T27646 arg2Of primers,using
R19091 T27648 T27647 arg1Of primers,random
R19092 T27648 T27649 arg1Of primers,(
R19093 T27652 T27649 arg2Of kit,(
R19094 T27652 T27650 arg1Of kit,M-MuLV
R19095 T27652 T27651 arg1Of kit,cDNA
R19096 T27652 T27653 arg1Of kit,","
R19097 T27656 T27653 arg2Of Biolabs,","
R19098 T27656 T27654 arg1Of Biolabs,New
R19099 T27656 T27655 arg1Of Biolabs,England
R19100 T27657 T27649 arg3Of ),(
R19101 T27659 T27658 arg1Of µL,1
R19102 T27659 T27660 arg1Of µL,of
R19103 T27659 T27662 arg1Of µL,was
R19104 T27659 T27663 arg2Of µL,used
R19105 T27661 T27660 arg2Of cDNA,of
R19106 T27663 T27662 arg2Of used,was
R19107 T27663 T27664 arg1Of used,with
R19108 T27667 T27664 arg2Of primers,with
R19109 T27667 T27665 arg1Of primers,500
R19110 T27667 T27666 arg1Of primers,pM
R19111 T27667 T27668 arg1Of primers,in
R19112 T27670 T27668 arg2Of reactions,in
R19113 T27670 T27669 arg1Of reactions,qPCR
R19114 T27671 T27672 arg1Of Reactions,were
R19115 T27673 T27672 arg2Of performs,were
R19116 T27673 T27674 arg1Of performs,using
R19117 T27677 T27674 arg2Of mix,using
R19118 T27677 T27675 arg1Of mix,SYBRGreen
R19119 T27677 T27676 arg1Of mix,2×Master
R19120 T27677 T27678 arg1Of mix,(
R19121 T27677 T27681 arg1Of mix,in
R19122 T27679 T27678 arg2Of SABiosciences,(
R19123 T27680 T27678 arg3Of ),(
R19124 T27683 T27681 arg2Of LightCycler480,in
R19125 T27683 T27682 arg1Of LightCycler480,a
R19126 T27683 T27684 arg1Of LightCycler480,(
R19127 T27685 T27684 arg2Of Roche,(
R19128 T27686 T27684 arg3Of ),(

sentences

Id Subject Object Predicate Lexical cue
T27616 277-374 Sentence denotes Reactions were performs using SYBRGreen 2×Master mix (SABiosciences) in a LightCycler480 (Roche).
T27615 216-276 Sentence denotes 1 µL of cDNA was used with 500 pM primers in qPCR reactions.
T27614 121-215 Sentence denotes 1 µg of RNA was converted to cDNA using random primers (M-MuLV cDNA kit, New England Biolabs).
T27613 59-120 Sentence denotes Total RNA was isolated using ZR Miniprep kit (Zymo Research).
T27612 8-58 Sentence denotes Cells were treated as described for Western blots.
T27611 0-7 Sentence denotes qRT-PCR
T355 0-7 Sentence denotes qRT-PCR
T356 8-58 Sentence denotes Cells were treated as described for Western blots.
T357 59-120 Sentence denotes Total RNA was isolated using ZR Miniprep kit (Zymo Research).
T358 121-215 Sentence denotes 1 µg of RNA was converted to cDNA using random primers (M-MuLV cDNA kit, New England Biolabs).
T359 216-276 Sentence denotes 1 µL of cDNA was used with 500 pM primers in qPCR reactions.
T360 277-374 Sentence denotes Reactions were performs using SYBRGreen 2×Master mix (SABiosciences) in a LightCycler480 (Roche).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T27693 0-7 Protein denotes qRT-PCR
T27692 59-68 Protein denotes Total RNA
T27691 261-275 Protein denotes qPCR reactions
T27690 129-132 Protein denotes RNA
T27689 8-13 Entity denotes Cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T27770 373-374 . denotes .
T27769 372-373 -RRB- denotes )
T27768 367-372 NNP denotes Roche
T27767 366-367 -LRB- denotes (
T27766 351-365 NNP denotes LightCycler480
T27765 349-350 DT denotes a
T27764 346-348 IN denotes in
T27763 344-345 -RRB- denotes )
T27762 331-344 NNS denotes SABiosciences
T27761 330-331 -LRB- denotes (
T27760 326-329 NN denotes mix
T27759 319-325 NNP denotes Master
T27758 318-319 CD denotes ×
T27757 317-318 CD denotes 2
T27756 307-316 NNP denotes SYBRGreen
T27755 301-306 VBG denotes using
T27754 292-300 VBZ denotes performs
T27753 287-291 VBD denotes were
T27752 277-286 NNS denotes Reactions
T27751 275-276 . denotes .
T27750 266-275 NNS denotes reactions
T27749 261-265 NNP denotes qPCR
T27748 258-260 IN denotes in
T27747 250-257 NNS denotes primers
T27746 247-249 NN denotes pM
T27745 243-246 CD denotes 500
T27744 238-242 IN denotes with
T27743 233-237 VBN denotes used
T27742 229-232 VBD denotes was
T27741 224-228 NNP denotes cDNA
T27740 221-223 IN denotes of
T27739 218-220 NN denotes µL
T27738 216-217 CD denotes 1
T27737 214-215 . denotes .
T27736 213-214 -RRB- denotes )
T27735 206-213 NNPS denotes Biolabs
T27734 198-205 NNP denotes England
T27733 194-197 NNP denotes New
T27732 192-193 , denotes ,
T27731 189-192 NN denotes kit
T27730 184-188 NNP denotes cDNA
T27729 177-183 NNP denotes M-MuLV
T27728 176-177 -LRB- denotes (
T27727 168-175 NNS denotes primers
T27726 161-167 JJ denotes random
T27725 155-160 VBG denotes using
T27724 150-154 NNP denotes cDNA
T27723 147-149 TO denotes to
T27722 137-146 VBN denotes converted
T27721 133-136 VBD denotes was
T27720 129-132 NNP denotes RNA
T27719 126-128 IN denotes of
T27718 123-125 NN denotes µg
T27717 121-122 CD denotes 1
T27716 119-120 . denotes .
T27715 118-119 -RRB- denotes )
T27714 110-118 NNP denotes Research
T27713 105-109 NNP denotes Zymo
T27712 104-105 -LRB- denotes (
T27711 100-103 NN denotes kit
T27710 91-99 NNP denotes Miniprep
T27709 88-90 NNP denotes ZR
T27708 82-87 VBG denotes using
T27707 73-81 VBN denotes isolated
T27706 69-72 VBD denotes was
T27705 65-68 NNP denotes RNA
T27704 59-64 JJ denotes Total
T27703 57-58 . denotes .
T27702 52-57 NNS denotes blots
T27701 44-51 JJ denotes Western
T27700 40-43 IN denotes for
T27699 30-39 VBN denotes described
T27698 27-29 IN denotes as
T27697 19-26 VBN denotes treated
T27696 14-18 VBD denotes were
T27695 8-13 NNPS denotes Cells
T27694 0-7 NNP denotes qRT-PCR
R19129 T27694 T27695 compound qRT-PCR,Cells
R19130 T27695 T27697 nsubjpass Cells,treated
R19131 T27696 T27697 auxpass were,treated
R19132 T27697 T27697 ROOT treated,treated
R19133 T27698 T27699 mark as,described
R19134 T27699 T27697 advcl described,treated
R19135 T27700 T27699 prep for,described
R19136 T27701 T27702 amod Western,blots
R19137 T27702 T27700 pobj blots,for
R19138 T27703 T27697 punct .,treated
R19139 T27704 T27705 amod Total,RNA
R19140 T27705 T27707 nsubjpass RNA,isolated
R19141 T27706 T27707 auxpass was,isolated
R19142 T27707 T27707 ROOT isolated,isolated
R19143 T27708 T27707 advcl using,isolated
R19144 T27709 T27711 compound ZR,kit
R19145 T27710 T27711 compound Miniprep,kit
R19146 T27711 T27708 dobj kit,using
R19147 T27712 T27711 punct (,kit
R19148 T27713 T27714 compound Zymo,Research
R19149 T27714 T27711 appos Research,kit
R19150 T27715 T27711 punct ),kit
R19151 T27716 T27717 punct .,1
R19152 T27717 T27718 nummod 1,µg
R19153 T27718 T27722 nsubjpass µg,converted
R19154 T27719 T27718 prep of,µg
R19155 T27720 T27719 pobj RNA,of
R19156 T27721 T27722 auxpass was,converted
R19157 T27722 T27707 conj converted,isolated
R19158 T27723 T27722 prep to,converted
R19159 T27724 T27723 pobj cDNA,to
R19160 T27725 T27722 advcl using,converted
R19161 T27726 T27727 amod random,primers
R19162 T27727 T27725 dobj primers,using
R19163 T27728 T27727 punct (,primers
R19164 T27729 T27730 compound M-MuLV,cDNA
R19165 T27730 T27731 compound cDNA,kit
R19166 T27731 T27727 appos kit,primers
R19167 T27732 T27731 punct ",",kit
R19168 T27733 T27734 compound New,England
R19169 T27734 T27735 compound England,Biolabs
R19170 T27735 T27731 appos Biolabs,kit
R19171 T27736 T27727 punct ),primers
R19172 T27737 T27722 punct .,converted
R19173 T27738 T27739 nummod 1,µL
R19174 T27739 T27743 nsubjpass µL,used
R19175 T27740 T27739 prep of,µL
R19176 T27741 T27740 pobj cDNA,of
R19177 T27742 T27743 auxpass was,used
R19178 T27743 T27743 ROOT used,used
R19179 T27744 T27743 prep with,used
R19180 T27745 T27746 nummod 500,pM
R19181 T27746 T27747 compound pM,primers
R19182 T27747 T27744 pobj primers,with
R19183 T27748 T27747 prep in,primers
R19184 T27749 T27750 compound qPCR,reactions
R19185 T27750 T27748 pobj reactions,in
R19186 T27751 T27743 punct .,used
R19187 T27752 T27754 nsubj Reactions,performs
R19188 T27753 T27754 advmod were,performs
R19189 T27754 T27754 ROOT performs,performs
R19190 T27755 T27754 advcl using,performs
R19191 T27756 T27760 nmod SYBRGreen,mix
R19192 T27757 T27756 nummod 2,SYBRGreen
R19193 T27758 T27760 nummod ×,mix
R19194 T27759 T27760 compound Master,mix
R19195 T27760 T27755 dobj mix,using
R19196 T27761 T27760 punct (,mix
R19197 T27762 T27760 appos SABiosciences,mix
R19198 T27763 T27760 punct ),mix
R19199 T27764 T27755 prep in,using
R19200 T27765 T27766 det a,LightCycler480
R19201 T27766 T27764 pobj LightCycler480,in
R19202 T27767 T27766 punct (,LightCycler480
R19203 T27768 T27766 appos Roche,LightCycler480
R19204 T27769 T27766 punct ),LightCycler480
R19205 T27770 T27754 punct .,performs

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T27687 307-329 Protein denotes SYBRGreen 2×Master mix