PMC:3585731 / 528-724
Annnotations
testone
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pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T92","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T93","span":{"begin":119,"end":123},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"tical for necroptosis in L929 cells and plays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, "}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T407","span":{"begin":119,"end":123},"obj":"http://www.uniprot.org/uniprot/Q13546"},{"id":"T402","span":{"begin":60,"end":64},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T396","span":{"begin":97,"end":100},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T389","span":{"begin":97,"end":100},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T382","span":{"begin":97,"end":100},"obj":"http://www.uniprot.org/uniprot/P31749"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"tical for necroptosis in L929 cells and plays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, "}
GO-BP
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sentences
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simple1
{"project":"simple1","denotations":[{"id":"T147","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T148","span":{"begin":119,"end":123},"obj":"Protein"}],"text":"tical for necroptosis in L929 cells and plays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, "}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T357","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T358","span":{"begin":119,"end":123},"obj":"Protein"},{"id":"T366","span":{"begin":52,"end":56},"obj":"Regulation"},{"id":"T367","span":{"begin":65,"end":75},"obj":"Gene_expression"}],"relations":[{"id":"R452","pred":"themeOf","subj":"T357","obj":"T367"},{"id":"R456","pred":"themeOf","subj":"T367","obj":"T366"}],"text":"tical for necroptosis in L929 cells and plays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, "}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T445","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T446","span":{"begin":119,"end":123},"obj":"Protein"},{"id":"T454","span":{"begin":65,"end":75},"obj":"Gene_expression"}],"relations":[{"id":"R471","pred":"themeOf","subj":"T445","obj":"T454"}],"text":"tical for necroptosis in L929 cells and plays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, "}
DLUT931
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bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T764","span":{"begin":60,"end":75},"obj":"Gene_expression"},{"id":"T758","span":{"begin":77,"end":179},"obj":"Phosphorylation"},{"id":"T757","span":{"begin":77,"end":179},"obj":"Positive_regulation"},{"id":"T745","span":{"begin":119,"end":133},"obj":"Protein"},{"id":"T737","span":{"begin":170,"end":179},"obj":"Entity"},{"id":"T734","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T729","span":{"begin":97,"end":100},"obj":"Protein"}],"relations":[{"id":"R433","pred":"siteOf","subj":"T737","obj":"T758"},{"id":"R429","pred":"themeOf","subj":"T729","obj":"T757"},{"id":"R430","pred":"themeOf","subj":"T729","obj":"T758"},{"id":"R431","pred":"themeOf","subj":"T734","obj":"T764"},{"id":"R432","pred":"partOf","subj":"T737","obj":"T729"}],"text":"tical for necroptosis in L929 cells and plays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, "}
bionlp-st-ge-2016-spacy-parsed
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bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T474","span":{"begin":104,"end":113},"obj":"Positive_regulation"},{"id":"T473","span":{"begin":154,"end":169},"obj":"Phosphorylation"},{"id":"T472","span":{"begin":104,"end":113},"obj":"Positive_regulation"},{"id":"T471","span":{"begin":173,"end":179},"obj":"Protein"},{"id":"T470","span":{"begin":119,"end":123},"obj":"Protein"},{"id":"T469","span":{"begin":97,"end":100},"obj":"Protein"},{"id":"T468","span":{"begin":65,"end":75},"obj":"Gene_expression"},{"id":"T467","span":{"begin":60,"end":64},"obj":"Protein"}],"relations":[{"id":"R218","pred":"themeOf","subj":"T467","obj":"T468"},{"id":"R219","pred":"themeOf","subj":"T469","obj":"T472"},{"id":"R220","pred":"themeOf","subj":"T471","obj":"T473"},{"id":"R221","pred":"themeOf","subj":"T473","obj":"T474"}],"text":"tical for necroptosis in L929 cells and plays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, "}
test3
{"project":"test3","denotations":[{"id":"T51","span":{"begin":154,"end":169},"obj":"Phosphorylation"},{"id":"T50","span":{"begin":119,"end":123},"obj":"Protein"},{"id":"T49","span":{"begin":104,"end":113},"obj":"Positive_regulation"},{"id":"T48","span":{"begin":65,"end":75},"obj":"Gene_expression"},{"id":"T47","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T46","span":{"begin":52,"end":56},"obj":"Regulation"},{"id":"T34","span":{"begin":119,"end":123},"obj":"Protein"},{"id":"T33","span":{"begin":60,"end":64},"obj":"Protein"}],"relations":[{"id":"R10","pred":"themeOf","subj":"T47","obj":"T48"},{"id":"R11","pred":"themeOf","subj":"T48","obj":"T46"},{"id":"R12","pred":"themeOf","subj":"T50","obj":"T49"}],"text":"tical for necroptosis in L929 cells and plays a key role in TNFα production. During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308. In L929 cells, "}