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PMC:3585731 / 528-724 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T26 154-169 Phosphorylation denotes phosphorylation
T25 124-133 Regulation denotes dependent
T24 104-113 Positive_regulation denotes activated
T23 65-75 Gene_expression denotes production
T22 52-56 Regulation denotes role
T16 119-123 Protein denotes RIP1
T15 60-64 Protein denotes TNFα
R5 T23 T22 themeOf production,role
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T255 194-195 -COMMA- denotes ,
T254 189-194 NN denotes cells
T253 184-188 NN denotes L929
T252 181-183 IN denotes In
T251 173-179 NN denotes Thr308
T250 170-172 IN denotes on
T249 154-169 NN denotes phosphorylation
T248 150-153 PRP-DOLLAR- denotes its
T247 142-149 IN denotes through
T246 134-141 NN denotes fashion
T245 124-133 JJ denotes dependent
T244 119-123 NN denotes RIP1
T243 117-118 DT denotes a
T242 114-116 IN denotes in
T241 104-113 VB denotes activated
T240 101-103 VB denotes is
T239 97-100 NN denotes Akt
T238 95-96 -COMMA- denotes ,
T237 84-95 NN denotes necroptosis
T236 77-83 IN denotes During
T235 65-75 NN denotes production
T234 60-64 NN denotes TNFα
T233 57-59 IN denotes in
T232 52-56 NN denotes role
T231 48-51 JJ denotes key
T230 46-47 DT denotes a
T229 40-45 VB denotes plays
T228 36-39 CC denotes and
T227 30-35 NN denotes cells
T226 25-29 NN denotes L929
T225 22-24 IN denotes in
T224 10-21 NN denotes necroptosis
T223 6-9 IN denotes for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα
R98 T237 T236 arg2Of necroptosis,During
R99 T239 T240 arg1Of Akt,is
R100 T239 T241 arg2Of Akt,activated
R101 T241 T236 arg1Of activated,During
R102 T241 T238 arg1Of activated,","
R103 T241 T240 arg2Of activated,is
R104 T241 T242 arg1Of activated,in
R105 T241 T247 arg1Of activated,through
R106 T245 T244 arg1Of dependent,RIP1
R107 T246 T242 arg2Of fashion,in
R108 T246 T243 arg1Of fashion,a
R109 T246 T245 arg1Of fashion,dependent
R110 T249 T247 arg2Of phosphorylation,through
R111 T249 T248 arg1Of phosphorylation,its
R112 T249 T250 arg1Of phosphorylation,on
R113 T251 T250 arg2Of Thr308,on
R114 T254 T252 arg2Of cells,In
R115 T254 T253 arg1Of cells,L929

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T92 60-64 Protein denotes TNFα
T93 119-123 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T407 119-123 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 60-64 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T396 97-100 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T389 97-100 http://www.uniprot.org/uniprot/P31751 denotes Akt
T382 97-100 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T130 154-169 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T111 84-95 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T110 10-21 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T103 84-95 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T102 10-21 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T64 77-180 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.
T7 77-180 Sentence denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308.

simple1

Id Subject Object Predicate Lexical cue
T147 60-64 Protein denotes TNFα
T148 119-123 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T357 60-64 Protein denotes TNFα
T358 119-123 Protein denotes RIP1
T366 52-56 Regulation denotes role
T367 65-75 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T445 60-64 Protein denotes TNFα
T446 119-123 Protein denotes RIP1
T454 65-75 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T424 52-56 Regulation denotes role
T414 60-64 Protein denotes TNFα
T415 119-123 Protein denotes RIP1
T423 65-75 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 60-75 Gene_expression denotes TNFα production
T758 77-179 Phosphorylation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T757 77-179 Positive_regulation denotes During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308
T745 119-133 Protein denotes RIP1 dependent
T737 170-179 Entity denotes on Thr308
T734 60-64 Protein denotes TNFα
T729 97-100 Protein denotes Akt
R433 T737 T758 siteOf on Thr308,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R429 T729 T757 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R430 T729 T758 themeOf Akt,"During necroptosis, Akt is activated in a RIP1 dependent fashion through its phosphorylation on Thr308"
R431 T734 T764 themeOf TNFα,TNFα production
R432 T737 T729 partOf on Thr308,Akt

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T573 77-83 IN denotes During
T572 75-76 . denotes .
T571 65-75 NN denotes production
T570 60-64 JJ denotes TNFα
T569 57-59 IN denotes in
T568 52-56 NN denotes role
T567 48-51 JJ denotes key
T566 46-47 DT denotes a
T565 40-45 VBZ denotes plays
T564 36-39 CC denotes and
T563 30-35 NNS denotes cells
T562 25-29 CD denotes L929
T561 22-24 IN denotes in
T560 10-21 NN denotes necroptosis
T559 6-9 IN denotes for
T593 194-195 , denotes ,
T592 189-194 NNS denotes cells
T591 184-188 CD denotes L929
T590 181-183 IN denotes In
T589 179-180 . denotes .
T588 173-179 NNP denotes Thr308
T587 170-172 IN denotes on
T586 154-169 NN denotes phosphorylation
T585 150-153 PRP$ denotes its
T584 142-149 IN denotes through
T583 134-141 NN denotes fashion
T582 124-133 JJ denotes dependent
T581 119-123 NNP denotes RIP1
T580 117-118 DT denotes a
T579 114-116 IN denotes in
T578 104-113 VBN denotes activated
T577 101-103 VBZ denotes is
T576 97-100 NNP denotes Akt
T575 95-96 , denotes ,
T574 84-95 NN denotes necroptosis
R300 T560 T559 pobj necroptosis,for
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R313 T573 T578 prep During,activated
R314 T574 T573 pobj necroptosis,During
R315 T575 T578 punct ",",activated
R316 T576 T578 nsubjpass Akt,activated
R317 T577 T578 auxpass is,activated
R318 T578 T578 ROOT activated,activated
R319 T579 T578 prep in,activated
R320 T580 T583 det a,fashion
R321 T581 T583 nmod RIP1,fashion
R322 T582 T583 amod dependent,fashion
R323 T583 T579 pobj fashion,in
R324 T584 T578 prep through,activated
R325 T585 T586 poss its,phosphorylation
R326 T586 T584 pobj phosphorylation,through
R327 T587 T586 prep on,phosphorylation
R328 T588 T587 pobj Thr308,on
R329 T589 T578 punct .,activated
R331 T591 T592 nummod L929,cells
R332 T592 T590 pobj cells,In

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T474 104-113 Positive_regulation denotes activated
T473 154-169 Phosphorylation denotes phosphorylation
T472 104-113 Positive_regulation denotes activated
T471 173-179 Protein denotes Thr308
T470 119-123 Protein denotes RIP1
T469 97-100 Protein denotes Akt
T468 65-75 Gene_expression denotes production
T467 60-64 Protein denotes TNFα
R218 T467 T468 themeOf TNFα,production
R219 T469 T472 themeOf Akt,activated
R220 T471 T473 themeOf Thr308,phosphorylation
R221 T473 T474 themeOf phosphorylation,activated

test3

Id Subject Object Predicate Lexical cue
T51 154-169 Phosphorylation denotes phosphorylation
T50 119-123 Protein denotes RIP1
T49 104-113 Positive_regulation denotes activated
T48 65-75 Gene_expression denotes production
T47 60-64 Protein denotes TNFα
T46 52-56 Regulation denotes role
T34 119-123 Protein denotes RIP1
T33 60-64 Protein denotes TNFα
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role
R12 T50 T49 themeOf RIP1,activated