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PMC:3585731 / 49208-49509 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T20805 15-25 Gene_expression denotes production
T20804 5-14 Positive_regulation denotes increased
T20761 29-33 Protein denotes TNFα
R13924 T20761 T20805 themeOf TNFα,production
R13934 T20805 T20804 themeOf production,increased

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22651 295-300 NN denotes death
T22650 287-294 NN denotes patient
T22649 283-286 CC denotes and
T22648 275-282 NN denotes failure
T22647 269-274 NN denotes organ
T22646 260-268 JJ denotes multiple
T22645 257-259 IN denotes of
T22644 251-256 NN denotes cause
T22643 243-250 JJ denotes primary
T22642 239-242 DT denotes the
T22641 236-238 VB denotes is
T22640 230-235 NN denotes death
T22639 225-229 NN denotes cell
T22638 216-224 JJ denotes necrotic
T22637 203-215 VB denotes accompanying
T22636 190-202 NN denotes inflammation
T22635 178-189 JJ denotes hyper-acute
T22634 172-177 WRB denotes where
T22633 170-171 -COMMA- denotes ,
T22632 160-170 NN denotes infections
T22631 150-159 JJ denotes bacterial
T22630 144-149 JJ denotes acute
T22629 140-143 CC denotes and
T22628 127-139 NN denotes pancreatitis
T22627 115-126 VB denotes necrotizing
T22626 112-114 IN denotes as
T22625 107-111 JJ denotes such
T22624 105-106 -COMMA- denotes ,
T22623 97-105 NN denotes diseases
T22622 85-96 VB denotes necrotizing
T22621 79-84 JJ denotes acute
T22620 75-78 IN denotes for
T22619 65-74 JJ denotes important
T22618 62-64 VB denotes be
T22617 57-61 RB denotes also
T22616 53-56 MD denotes may
T22615 41-52 NN denotes necroptosis
T22614 34-40 IN denotes during
T22613 29-33 NN denotes TNFα
T22612 26-28 IN denotes of
T22611 15-25 NN denotes production
T22610 5-14 VB denotes increased
T22609 0-4 DT denotes This
R15317 T22651 T22650 arg1Of death,patient
R15274 T22611 T22609 arg1Of production,This
R15275 T22611 T22610 arg2Of production,increased
R15276 T22611 T22612 arg1Of production,of
R15277 T22611 T22614 arg1Of production,during
R15278 T22611 T22616 arg1Of production,may
R15279 T22611 T22618 arg1Of production,be
R15280 T22611 T22619 arg1Of production,important
R15281 T22613 T22612 arg2Of TNFα,of
R15282 T22615 T22614 arg2Of necroptosis,during
R15283 T22618 T22616 arg2Of be,may
R15284 T22618 T22617 arg1Of be,also
R15285 T22619 T22618 arg2Of important,be
R15286 T22619 T22620 arg1Of important,for
R15287 T22623 T22620 arg2Of diseases,for
R15288 T22623 T22621 arg1Of diseases,acute
R15289 T22623 T22622 arg1Of diseases,necrotizing
R15290 T22623 T22624 arg1Of diseases,","
R15291 T22623 T22626 arg1Of diseases,as
R15292 T22623 T22633 arg1Of diseases,","
R15293 T22623 T22634 arg1Of diseases,where
R15294 T22626 T22625 arg1Of as,such
R15295 T22627 T22626 arg2Of necrotizing,as
R15296 T22628 T22629 arg1Of pancreatitis,and
R15297 T22629 T22627 arg2Of and,necrotizing
R15298 T22632 T22629 arg2Of infections,and
R15299 T22632 T22630 arg1Of infections,acute
R15300 T22632 T22631 arg1Of infections,bacterial
R15301 T22636 T22635 arg1Of inflammation,hyper-acute
R15302 T22636 T22637 arg1Of inflammation,accompanying
R15303 T22636 T22641 arg1Of inflammation,is
R15304 T22640 T22637 arg2Of death,accompanying
R15305 T22640 T22638 arg1Of death,necrotic
R15306 T22640 T22639 arg1Of death,cell
R15307 T22641 T22634 arg2Of is,where
R15308 T22644 T22641 arg2Of cause,is
R15309 T22644 T22642 arg1Of cause,the
R15310 T22644 T22643 arg1Of cause,primary
R15311 T22644 T22645 arg1Of cause,of
R15312 T22648 T22646 arg1Of failure,multiple
R15313 T22648 T22647 arg1Of failure,organ
R15314 T22648 T22649 arg1Of failure,and
R15315 T22649 T22645 arg2Of and,of
R15316 T22651 T22649 arg2Of death,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21088 29-33 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22946 29-33 http://www.uniprot.org/uniprot/P01375 denotes TNFα

UBERON-AE

Id Subject Object Predicate Lexical cue
T20933 269-274 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organ

GO-BP

Id Subject Object Predicate Lexical cue
T21258 190-202 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T21254 216-235 http://purl.obolibrary.org/obo/GO_0097300 denotes necrotic cell death
T21240 216-235 http://purl.obolibrary.org/obo/GO_0010939 denotes necrotic cell death
T21227 216-235 http://purl.obolibrary.org/obo/GO_0070265 denotes necrotic cell death
T21195 295-300 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T21194 230-235 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T21155 41-52 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T21135 216-235 http://purl.obolibrary.org/obo/GO_0070266 denotes necrotic cell death

GO-CC

Id Subject Object Predicate Lexical cue
T21287 225-229 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T20980 0-301 Sentence denotes This increased production of TNFα during necroptosis may also be important for acute necrotizing diseases, such as necrotizing pancreatitis and acute bacterial infections, where hyper-acute inflammation accompanying necrotic cell death is the primary cause of multiple organ failure and patient death.
T305 0-301 Sentence denotes This increased production of TNFα during necroptosis may also be important for acute necrotizing diseases, such as necrotizing pancreatitis and acute bacterial infections, where hyper-acute inflammation accompanying necrotic cell death is the primary cause of multiple organ failure and patient death.

ICD10

Id Subject Object Predicate Lexical cue
T21266 150-170 http://purl.bioontology.org/ontology/ICD10/A49.9 denotes bacterial infections
T21265 127-149 http://purl.bioontology.org/ontology/ICD10/K85 denotes pancreatitis and acute

simple1

Id Subject Object Predicate Lexical cue
T21340 29-33 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22814 5-14 Positive_regulation denotes increased
T22813 15-25 Gene_expression denotes production
T22787 29-33 Protein denotes TNFα
R15397 T22787 T22813 themeOf TNFα,production
R15405 T22813 T22814 themeOf production,increased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23118 29-33 Protein denotes TNFα
T23144 5-14 Positive_regulation denotes increased
T23143 15-25 Gene_expression denotes production
R15472 T23118 T23143 themeOf TNFα,production
R15480 T23143 T23144 themeOf production,increased

DLUT931

Id Subject Object Predicate Lexical cue
T23023 5-14 Positive_regulation denotes increased
T23022 15-25 Gene_expression denotes production
T22988 29-33 Protein denotes TNFα
R15430 T22988 T23022 themeOf TNFα,production
R15442 T23022 T23023 themeOf production,increased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23477 26-33 Protein denotes of TNFα
T23654 0-52 Gene_expression denotes This increased production of TNFα during necroptosis
T23627 0-52 Positive_regulation denotes This increased production of TNFα during necroptosis
R15644 T23477 T23654 themeOf of TNFα,This increased production of TNFα during necroptosis
R15683 T23654 T23627 themeOf This increased production of TNFα during necroptosis,This increased production of TNFα during necroptosis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T24968 15-25 NN denotes production
T24967 5-14 VBD denotes increased
T24966 0-4 DT denotes This
T25009 300-301 . denotes .
T25008 295-300 NN denotes death
T25007 287-294 NN denotes patient
T25006 283-286 CC denotes and
T25005 275-282 NN denotes failure
T25004 269-274 NN denotes organ
T25003 260-268 JJ denotes multiple
T25002 257-259 IN denotes of
T25001 251-256 NN denotes cause
T25000 243-250 JJ denotes primary
T24999 239-242 DT denotes the
T24998 236-238 VBZ denotes is
T24997 230-235 NN denotes death
T24996 225-229 NN denotes cell
T24995 216-224 JJ denotes necrotic
T24994 203-215 VBG denotes accompanying
T24993 190-202 NN denotes inflammation
T24992 178-189 JJ denotes hyper-acute
T24991 172-177 WRB denotes where
T24990 170-171 , denotes ,
T24989 160-170 NNS denotes infections
T24988 150-159 JJ denotes bacterial
T24987 144-149 JJ denotes acute
T24986 140-143 CC denotes and
T24985 127-139 NN denotes pancreatitis
T24984 115-126 VBG denotes necrotizing
T24983 112-114 IN denotes as
T24982 107-111 JJ denotes such
T24981 105-106 , denotes ,
T24980 97-105 NNS denotes diseases
T24979 85-96 JJ denotes necrotizing
T24978 79-84 JJ denotes acute
T24977 75-78 IN denotes for
T24976 65-74 JJ denotes important
T24975 62-64 VB denotes be
T24974 57-61 RB denotes also
T24973 53-56 MD denotes may
T24972 41-52 NN denotes necroptosis
T24971 34-40 IN denotes during
T24970 29-33 NNP denotes TNFα
T24969 26-28 IN denotes of
R17048 T24966 T24967 nsubj This,increased
R17049 T24967 T24968 amod increased,production
R17050 T24968 T24975 nsubj production,be
R17051 T24969 T24968 prep of,production
R17052 T24970 T24969 pobj TNFα,of
R17053 T24971 T24968 prep during,production
R17054 T24972 T24971 pobj necroptosis,during
R17055 T24973 T24975 aux may,be
R17056 T24974 T24975 advmod also,be
R17057 T24975 T24975 ROOT be,be
R17058 T24976 T24975 acomp important,be
R17059 T24977 T24976 prep for,important
R17060 T24978 T24980 amod acute,diseases
R17061 T24979 T24980 amod necrotizing,diseases
R17062 T24980 T24977 pobj diseases,for
R17063 T24981 T24980 punct ",",diseases
R17064 T24982 T24983 amod such,as
R17065 T24983 T24980 prep as,diseases
R17066 T24984 T24983 pcomp necrotizing,as
R17067 T24985 T24984 dobj pancreatitis,necrotizing
R17068 T24986 T24985 cc and,pancreatitis
R17069 T24987 T24989 amod acute,infections
R17070 T24988 T24989 amod bacterial,infections
R17071 T24989 T24985 conj infections,pancreatitis
R17072 T24990 T24989 punct ",",infections
R17073 T24991 T24998 advmod where,is
R17074 T24992 T24993 amod hyper-acute,inflammation
R17075 T24993 T24997 poss inflammation,death
R17076 T24994 T24997 amod accompanying,death
R17077 T24995 T24997 amod necrotic,death
R17078 T24996 T24997 compound cell,death
R17079 T24997 T24998 nsubj death,is
R17080 T24998 T24975 advcl is,be
R17081 T24999 T25001 det the,cause
R17082 T25000 T25001 amod primary,cause
R17083 T25001 T24998 attr cause,is
R17084 T25002 T25001 prep of,cause
R17085 T25003 T25005 amod multiple,failure
R17086 T25004 T25005 compound organ,failure
R17087 T25005 T25002 pobj failure,of
R17088 T25006 T25005 cc and,failure
R17089 T25007 T25008 compound patient,death
R17090 T25008 T25005 conj death,failure
R17091 T25009 T24975 punct .,be

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23303 5-14 Positive_regulation denotes increased
T23302 15-25 Gene_expression denotes production
T23301 29-33 Protein denotes TNFα
R15559 T23301 T23302 themeOf TNFα,production
R15560 T23302 T23303 themeOf production,increased

test3

Id Subject Object Predicate Lexical cue
T20925 29-33 Protein denotes TNFα
T20924 15-25 Gene_expression denotes production
T20923 5-14 Positive_regulation denotes increased
T20843 29-33 Protein denotes TNFα
R13957 T20924 T20923 themeOf production,increased
R13958 T20925 T20924 themeOf TNFα,production