> top > docs > PMC:3585731 > spans > 48348-48722 > annotations

PMC:3585731 / 48348-48722 JSONTXT

Annnotations TAB JSON ListView MergeView

testone

Id Subject Object Predicate Lexical cue
T20802 344-353 Gene_expression denotes synthesis
T20801 325-335 Positive_regulation denotes activation
T20755 357-361 Protein denotes RIP1
T20754 339-343 Protein denotes TNFα
R13922 T20754 T20802 themeOf TNFα,synthesis
R13933 T20802 T20801 themeOf synthesis,activation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T22526 366-373 NN denotes kinases
T22525 357-365 NN denotes RIP1/Akt
T22524 354-356 IN denotes by
T22523 344-353 NN denotes synthesis
T22522 339-343 NN denotes TNFα
T22521 336-338 IN denotes of
T22520 325-335 NN denotes activation
T22519 316-324 JJ denotes specific
T22518 312-315 DT denotes the
T22517 309-311 TO denotes to
T22516 305-308 JJ denotes due
T22515 293-304 NN denotes necroptosis
T22514 290-292 IN denotes of
T22513 280-289 NN denotes component
T22512 270-279 VB denotes regulated
T22511 266-269 CC denotes and
T22510 256-265 JJ denotes intrinsic
T22509 253-255 DT denotes an
T22508 250-252 VB denotes is
T22507 247-249 PRP denotes it
T22506 242-246 IN denotes that
T22505 237-241 RB denotes also
T22504 233-236 CC denotes but
T22503 231-232 -COMMA- denotes ,
T22502 226-231 NN denotes death
T22501 221-225 NN denotes cell
T22500 212-220 JJ denotes necrotic
T22499 208-211 IN denotes for
T22498 193-207 JJ denotes characteristic
T22497 183-192 NN denotes integrity
T22496 174-182 NN denotes membrane
T22495 167-173 NN denotes plasma
T22494 164-166 IN denotes of
T22493 159-163 NN denotes loss
T22492 153-158 JJ denotes rapid
T22491 150-152 IN denotes of
T22490 143-149 NN denotes virtue
T22489 139-142 DT denotes the
T22488 136-138 IN denotes by
T22487 128-135 NN denotes systems
T22486 119-127 JJ denotes cellular
T22485 116-118 IN denotes of
T22484 108-115 NN denotes variety
T22483 106-107 DT denotes a
T22482 103-105 IN denotes in
T22481 91-102 NN denotes necroptosis
T22480 79-90 VB denotes accompanies
T22479 69-78 RB denotes passively
T22478 64-68 RB denotes only
T22477 60-63 RB denotes not
T22476 47-59 NN denotes inflammation
T22475 42-46 IN denotes that
T22474 35-41 NN denotes notion
T22473 25-34 JJ denotes important
T22472 22-24 DT denotes an
T22471 12-21 VB denotes highlight
T22470 4-11 NN denotes results
T22469 0-3 PRP-DOLLAR- denotes Our
R15132 T22470 T22469 arg1Of results,Our
R15133 T22470 T22471 arg1Of results,highlight
R15134 T22474 T22471 arg2Of notion,highlight
R15135 T22474 T22472 arg1Of notion,an
R15136 T22474 T22473 arg1Of notion,important
R15137 T22476 T22480 arg1Of inflammation,accompanies
R15138 T22478 T22477 arg1Of only,not
R15139 T22480 T22474 arg2Of accompanies,notion
R15140 T22480 T22475 arg1Of accompanies,that
R15141 T22480 T22478 arg1Of accompanies,only
R15142 T22480 T22479 arg1Of accompanies,passively
R15143 T22480 T22482 arg1Of accompanies,in
R15144 T22480 T22488 arg1Of accompanies,by
R15145 T22481 T22480 arg2Of necroptosis,accompanies
R15146 T22484 T22482 arg2Of variety,in
R15147 T22484 T22483 arg1Of variety,a
R15148 T22484 T22485 arg1Of variety,of
R15149 T22487 T22485 arg2Of systems,of
R15150 T22487 T22486 arg1Of systems,cellular
R15151 T22490 T22488 arg2Of virtue,by
R15152 T22490 T22489 arg1Of virtue,the
R15153 T22490 T22491 arg1Of virtue,of
R15154 T22493 T22491 arg2Of loss,of
R15155 T22493 T22492 arg1Of loss,rapid
R15156 T22493 T22494 arg1Of loss,of
R15157 T22493 T22506 arg1Of loss,that
R15158 T22493 T22514 arg1Of loss,of
R15159 T22494 T22504 arg1Of of,but
R15160 T22497 T22494 arg2Of integrity,of
R15161 T22497 T22495 arg1Of integrity,plasma
R15162 T22497 T22496 arg1Of integrity,membrane
R15163 T22497 T22498 arg1Of integrity,characteristic
R15164 T22498 T22499 arg1Of characteristic,for
R15165 T22502 T22499 arg2Of death,for
R15166 T22502 T22500 arg1Of death,necrotic
R15167 T22502 T22501 arg1Of death,cell
R15168 T22504 T22503 arg1Of but,","
R15169 T22504 T22505 arg1Of but,also
R15170 T22506 T22504 arg2Of that,but
R15171 T22507 T22508 arg1Of it,is
R15172 T22508 T22506 arg2Of is,that
R15173 T22510 T22511 arg1Of intrinsic,and
R15174 T22512 T22511 arg2Of regulated,and
R15175 T22513 T22508 arg2Of component,is
R15176 T22513 T22509 arg1Of component,an
R15177 T22513 T22510 arg1Of component,intrinsic
R15178 T22513 T22512 arg1Of component,regulated
R15179 T22515 T22514 arg2Of necroptosis,of
R15180 T22515 T22517 arg1Of necroptosis,to
R15181 T22517 T22516 arg1Of to,due
R15182 T22520 T22517 arg2Of activation,to
R15183 T22520 T22518 arg1Of activation,the
R15184 T22520 T22519 arg1Of activation,specific
R15185 T22520 T22521 arg1Of activation,of
R15186 T22520 T22524 arg1Of activation,by
R15187 T22523 T22521 arg2Of synthesis,of
R15188 T22523 T22522 arg1Of synthesis,TNFα
R15189 T22526 T22524 arg2Of kinases,by
R15190 T22526 T22525 arg1Of kinases,RIP1/Akt

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21082 357-361 Protein denotes RIP1
T21081 339-343 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22944 339-343 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T22930 357-361 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T22917 362-365 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T22883 362-365 http://www.uniprot.org/uniprot/P31751 denotes Akt
T22849 362-365 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T21259 119-127 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T21256 47-59 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T21253 212-231 http://purl.obolibrary.org/obo/GO_0097300 denotes necrotic cell death
T21239 212-231 http://purl.obolibrary.org/obo/GO_0010939 denotes necrotic cell death
T21226 212-231 http://purl.obolibrary.org/obo/GO_0070265 denotes necrotic cell death
T21193 226-231 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T21176 221-231 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T21166 344-353 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T21153 293-304 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T21152 91-102 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T21134 212-231 http://purl.obolibrary.org/obo/GO_0070266 denotes necrotic cell death
T21129 293-304 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T21128 91-102 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T21292 174-182 http://purl.obolibrary.org/obo/GO_0016020 denotes membrane
T21289 167-182 http://purl.obolibrary.org/obo/GO_0005886 denotes plasma membrane

sentences

Id Subject Object Predicate Lexical cue
T20976 0-374 Sentence denotes Our results highlight an important notion that inflammation not only passively accompanies necroptosis in a variety of cellular systems by the virtue of rapid loss of plasma membrane integrity characteristic for necrotic cell death, but also that it is an intrinsic and regulated component of necroptosis due to the specific activation of TNFα synthesis by RIP1/Akt kinases.
T301 0-374 Sentence denotes Our results highlight an important notion that inflammation not only passively accompanies necroptosis in a variety of cellular systems by the virtue of rapid loss of plasma membrane integrity characteristic for necrotic cell death, but also that it is an intrinsic and regulated component of necroptosis due to the specific activation of TNFα synthesis by RIP1/Akt kinases.

simple1

Id Subject Object Predicate Lexical cue
T21334 357-361 Protein denotes RIP1
T21333 339-343 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22809 344-353 Gene_expression denotes synthesis
T22808 325-335 Positive_regulation denotes activation
T22781 357-361 Protein denotes RIP1
T22780 339-343 Protein denotes TNFα
R15392 T22780 T22809 themeOf TNFα,synthesis
R15404 T22809 T22808 themeOf synthesis,activation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23112 357-361 Protein denotes RIP1
T23111 339-343 Protein denotes TNFα
T23140 325-335 Positive_regulation denotes activation
T23139 344-353 Gene_expression denotes synthesis
R15469 T23111 T23139 themeOf TNFα,synthesis
R15479 T23139 T23140 themeOf synthesis,activation

DLUT931

Id Subject Object Predicate Lexical cue
T23019 325-335 Positive_regulation denotes activation
T23018 344-353 Gene_expression denotes synthesis
T22982 357-361 Protein denotes RIP1
T22981 339-343 Protein denotes TNFα
R15441 T23018 T23019 themeOf synthesis,activation
R15426 T22981 T23018 themeOf TNFα,synthesis

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23574 354-373 Protein denotes by RIP1/Akt kinases
T23570 174-182 Entity denotes membrane
T23554 336-353 Protein denotes of TNFα synthesis
T23484 357-365 Protein denotes RIP1/Akt
T23622 357-365 Protein denotes RIP1/Akt
T23610 164-231 Entity denotes of plasma membrane integrity characteristic for necrotic cell death
T23607 362-365 Protein denotes Akt

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T24880 373-374 . denotes .
T24879 366-373 NNS denotes kinases
T24878 357-365 JJ denotes RIP1/Akt
T24877 354-356 IN denotes by
T24876 344-353 NN denotes synthesis
T24875 339-343 NNP denotes TNFα
T24874 336-338 IN denotes of
T24873 325-335 NN denotes activation
T24872 316-324 JJ denotes specific
T24871 312-315 DT denotes the
T24870 309-311 TO denotes to
T24869 305-308 JJ denotes due
T24868 293-304 NN denotes necroptosis
T24867 290-292 IN denotes of
T24866 280-289 NN denotes component
T24865 270-279 JJ denotes regulated
T24864 266-269 CC denotes and
T24863 256-265 JJ denotes intrinsic
T24862 253-255 DT denotes an
T24861 250-252 VBZ denotes is
T24860 247-249 PRP denotes it
T24859 242-246 IN denotes that
T24858 237-241 RB denotes also
T24857 233-236 CC denotes but
T24856 231-232 , denotes ,
T24855 226-231 NN denotes death
T24854 221-225 NN denotes cell
T24853 212-220 JJ denotes necrotic
T24852 208-211 IN denotes for
T24851 193-207 NN denotes characteristic
T24850 183-192 NN denotes integrity
T24849 174-182 NN denotes membrane
T24848 167-173 NN denotes plasma
T24847 164-166 IN denotes of
T24846 159-163 NN denotes loss
T24845 153-158 JJ denotes rapid
T24844 150-152 IN denotes of
T24843 143-149 NN denotes virtue
T24842 139-142 DT denotes the
T24841 136-138 IN denotes by
T24840 128-135 NNS denotes systems
T24839 119-127 JJ denotes cellular
T24838 116-118 IN denotes of
T24837 108-115 NN denotes variety
T24836 106-107 DT denotes a
T24835 103-105 IN denotes in
T24834 91-102 NN denotes necroptosis
T24833 79-90 VBZ denotes accompanies
T24832 69-78 RB denotes passively
T24831 64-68 RB denotes only
T24830 60-63 RB denotes not
T24829 47-59 NN denotes inflammation
T24828 42-46 IN denotes that
T24827 35-41 NN denotes notion
T24826 25-34 JJ denotes important
T24825 22-24 DT denotes an
T24824 12-21 VBP denotes highlight
T24823 4-11 NNS denotes results
T24822 0-3 PRP$ denotes Our
R16833 T24822 T24823 poss Our,results
R16837 T24823 T24824 nsubj results,highlight
R16838 T24824 T24824 ROOT highlight,highlight
R16840 T24825 T24827 det an,notion
R16841 T24826 T24827 amod important,notion
R16843 T24827 T24824 dobj notion,highlight
R16844 T24828 T24833 mark that,accompanies
R16846 T24829 T24833 nsubj inflammation,accompanies
R16847 T24830 T24833 preconj not,accompanies
R16848 T24831 T24830 advmod only,not
R16850 T24832 T24833 advmod passively,accompanies
R16851 T24833 T24827 acl accompanies,notion
R16852 T24834 T24833 dobj necroptosis,accompanies
R16854 T24835 T24833 prep in,accompanies
R16855 T24836 T24837 det a,variety
R16857 T24837 T24835 pobj variety,in
R16858 T24838 T24837 prep of,variety
R16859 T24839 T24840 amod cellular,systems
R16861 T24840 T24838 pobj systems,of
R16862 T24841 T24833 prep by,accompanies
R16863 T24842 T24843 det the,virtue
R16865 T24843 T24841 pobj virtue,by
R16867 T24844 T24843 prep of,virtue
R16870 T24845 T24846 amod rapid,loss
R16872 T24846 T24844 pobj loss,of
R16874 T24847 T24846 prep of,loss
R16876 T24848 T24849 compound plasma,membrane
R16878 T24849 T24850 compound membrane,integrity
R16879 T24850 T24851 compound integrity,characteristic
R16880 T24851 T24847 pobj characteristic,of
R16881 T24852 T24846 prep for,loss
R16882 T24853 T24855 amod necrotic,death
R16883 T24854 T24855 compound cell,death
R16885 T24855 T24852 pobj death,for
R16886 T24856 T24833 punct ",",accompanies
R16887 T24857 T24833 cc but,accompanies
R16888 T24858 T24857 advmod also,but
R16890 T24859 T24861 mark that,is
R16891 T24860 T24861 nsubj it,is
R16892 T24861 T24833 conj is,accompanies
R16894 T24862 T24866 det an,component
R16895 T24863 T24866 amod intrinsic,component
R16897 T24864 T24863 cc and,intrinsic
R16898 T24865 T24863 conj regulated,intrinsic
R16899 T24866 T24861 attr component,is
R16900 T24867 T24866 prep of,component
R16902 T24868 T24867 pobj necroptosis,of
R16903 T24869 T24866 amod due,component
R16905 T24870 T24869 pcomp to,due
R16906 T24871 T24873 det the,activation
R16907 T24872 T24873 amod specific,activation
R16909 T24873 T24869 pobj activation,due
R16910 T24874 T24873 prep of,activation
R16911 T24875 T24876 compound TNFα,synthesis
R16913 T24876 T24874 pobj synthesis,of
R16914 T24877 T24873 prep by,activation
R16915 T24878 T24879 amod RIP1/Akt,kinases
R16917 T24879 T24877 pobj kinases,by
R16918 T24880 T24824 punct .,highlight

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23291 325-335 Positive_regulation denotes activation
T23290 344-353 Gene_expression denotes synthesis
T23289 325-335 Positive_regulation denotes activation
T23288 362-365 Protein denotes Akt
T23287 357-361 Protein denotes RIP1
T23286 339-343 Protein denotes TNFα
R15549 T23286 T23290 themeOf TNFα,synthesis
R15550 T23288 T23289 themeOf Akt,activation
R15551 T23290 T23291 themeOf synthesis,activation

test3

Id Subject Object Predicate Lexical cue
T20916 357-361 Protein denotes RIP1
T20915 344-353 Gene_expression denotes synthesis
T20914 339-343 Protein denotes TNFα
T20913 325-335 Positive_regulation denotes activation
T20837 357-361 Protein denotes RIP1
T20836 339-343 Protein denotes TNFα
R13954 T20914 T20915 themeOf TNFα,synthesis
R13955 T20915 T20913 themeOf synthesis,activation