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PMC:3585731 / 4297-4550 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T818 235-244 Positive_regulation denotes activated
T807 175-179 Protein denotes RIP1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1634 245-252 IN denotes through
T1633 235-244 VB denotes activated
T1632 232-234 VB denotes is
T1631 228-231 NN denotes Akt
T1630 223-227 IN denotes that
T1629 216-222 VB denotes reveal
T1628 211-215 NN denotes data
T1627 207-210 PRP-DOLLAR- denotes Our
T1626 194-205 NN denotes necroptosis
T1625 187-193 IN denotes during
T1624 180-186 NN denotes kinase
T1623 175-179 NN denotes RIP1
T1622 170-174 IN denotes from
T1621 159-169 RB denotes downstream
T1620 150-158 NN denotes pathways
T1619 146-149 NN denotes JNK
T1618 142-145 CC denotes and
T1617 138-141 NN denotes Akt
T1616 134-137 DT denotes the
T1615 131-133 IN denotes of
T1614 122-130 NN denotes ordering
T1613 112-121 JJ denotes molecular
T1612 108-111 CC denotes and
T1611 94-107 NN denotes contributions
T1610 85-93 JJ denotes specific
T1609 81-84 DT denotes the
T1608 71-80 VB denotes delineate
T1607 68-70 TO denotes to
T1606 55-67 NN denotes observations
T1605 49-54 DT denotes these
T1604 40-48 VB denotes expanded
T1603 37-39 PRP denotes we
T1602 35-36 -COMMA- denotes ,
T1601 30-35 NN denotes study
T1600 25-29 DT denotes this
T1599 22-24 IN denotes In
T1598 12-20 VB denotes explored
T1597 7-11 VB denotes been
T1596 3-6 RB denotes not
R1046 T1598 T1596 arg1Of explored,not
R1047 T1598 T1597 arg2Of explored,been
R1048 T1601 T1599 arg2Of study,In
R1049 T1601 T1600 arg1Of study,this
R1050 T1603 T1604 arg1Of we,expanded
R1051 T1604 T1599 arg1Of expanded,In
R1052 T1604 T1602 arg1Of expanded,","
R1053 T1606 T1604 arg2Of observations,expanded
R1054 T1606 T1605 arg1Of observations,these
R1055 T1606 T1608 arg1Of observations,delineate
R1056 T1608 T1604 arg3Of delineate,expanded
R1057 T1608 T1607 arg1Of delineate,to
R1058 T1608 T1622 arg1Of delineate,from
R1059 T1608 T1625 arg1Of delineate,during
R1060 T1611 T1609 arg1Of contributions,the
R1061 T1611 T1610 arg1Of contributions,specific
R1062 T1611 T1612 arg1Of contributions,and
R1063 T1612 T1608 arg2Of and,delineate
R1064 T1614 T1612 arg2Of ordering,and
R1065 T1614 T1613 arg1Of ordering,molecular
R1066 T1614 T1615 arg1Of ordering,of
R1067 T1614 T1621 arg1Of ordering,downstream
R1068 T1617 T1618 arg1Of Akt,and
R1069 T1619 T1618 arg2Of JNK,and
R1070 T1620 T1615 arg2Of pathways,of
R1071 T1620 T1616 arg1Of pathways,the
R1072 T1620 T1617 arg1Of pathways,Akt
R1073 T1620 T1619 arg1Of pathways,JNK
R1074 T1624 T1622 arg2Of kinase,from
R1075 T1624 T1623 arg1Of kinase,RIP1
R1076 T1626 T1625 arg2Of necroptosis,during
R1077 T1628 T1627 arg1Of data,Our
R1078 T1628 T1629 arg1Of data,reveal
R1079 T1631 T1632 arg1Of Akt,is
R1080 T1631 T1633 arg2Of Akt,activated
R1081 T1633 T1629 arg2Of activated,reveal
R1082 T1633 T1630 arg1Of activated,that
R1083 T1633 T1632 arg2Of activated,is
R1084 T1633 T1634 arg1Of activated,through

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T944 175-179 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1838 228-231 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T1837 138-141 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T1827 228-231 http://www.uniprot.org/uniprot/P31751 denotes Akt
T1826 138-141 http://www.uniprot.org/uniprot/P31751 denotes Akt
T1816 228-231 http://www.uniprot.org/uniprot/P31749 denotes Akt
T1815 138-141 http://www.uniprot.org/uniprot/P31749 denotes Akt
T1802 175-179 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T1034 146-149 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T986 194-205 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T967 194-205 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T1053 146-149 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

sentences

Id Subject Object Predicate Lexical cue
T896 22-206 Sentence denotes In this study, we expanded these observations to delineate the specific contributions and molecular ordering of the Akt and JNK pathways downstream from RIP1 kinase during necroptosis.
T30 22-206 Sentence denotes In this study, we expanded these observations to delineate the specific contributions and molecular ordering of the Akt and JNK pathways downstream from RIP1 kinase during necroptosis.

simple1

Id Subject Object Predicate Lexical cue
T1078 175-179 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1772 235-244 Positive_regulation denotes activated
T1762 175-179 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2146 235-244 Positive_regulation denotes activated
T2134 175-179 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T1893 235-244 Positive_regulation denotes activated
T1881 175-179 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2792 175-179 Protein denotes RIP1
T2786 175-186 Protein denotes RIP1 kinase
T2781 138-141 Protein denotes Akt
T2735 228-231 Protein denotes Akt
T2731 146-149 Protein denotes JNK

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2552 245-252 IN denotes through
T2551 235-244 VBN denotes activated
T2550 232-234 VBZ denotes is
T2549 228-231 NNP denotes Akt
T2548 223-227 IN denotes that
T2547 216-222 VBP denotes reveal
T2546 211-215 NNS denotes data
T2545 207-210 PRP$ denotes Our
T2544 205-206 . denotes .
T2543 194-205 NN denotes necroptosis
T2542 187-193 IN denotes during
T2541 180-186 NN denotes kinase
T2540 175-179 CD denotes RIP1
T2539 170-174 IN denotes from
T2538 159-169 JJ denotes downstream
T2537 150-158 NNS denotes pathways
T2536 146-149 NNP denotes JNK
T2535 142-145 CC denotes and
T2534 138-141 NNP denotes Akt
T2533 134-137 DT denotes the
T2532 131-133 IN denotes of
T2531 122-130 VBG denotes ordering
T2530 112-121 JJ denotes molecular
T2529 108-111 CC denotes and
T2528 94-107 NNS denotes contributions
T2527 85-93 JJ denotes specific
T2526 81-84 DT denotes the
T2525 71-80 VB denotes delineate
T2524 68-70 TO denotes to
T2523 55-67 NNS denotes observations
T2522 49-54 DT denotes these
T2521 40-48 VBD denotes expanded
T2520 37-39 PRP denotes we
T2519 35-36 , denotes ,
T2518 30-35 NN denotes study
T2517 25-29 DT denotes this
T2516 22-24 IN denotes In
T2515 20-21 . denotes .
T2514 12-20 VBN denotes explored
T2513 7-11 VBN denotes been
T2512 3-6 RB denotes not
R1773 T2512 T2514 neg not,explored
R1775 T2513 T2514 auxpass been,explored
R1776 T2514 T2514 ROOT explored,explored
R1777 T2515 T2514 punct .,explored
R1779 T2516 T2521 prep In,expanded
R1780 T2517 T2518 det this,study
R1781 T2518 T2516 pobj study,In
R1783 T2519 T2521 punct ",",expanded
R1784 T2520 T2521 nsubj we,expanded
R1785 T2521 T2521 ROOT expanded,expanded
R1787 T2522 T2523 det these,observations
R1788 T2523 T2521 dobj observations,expanded
R1789 T2524 T2525 aux to,delineate
R1791 T2525 T2521 advcl delineate,expanded
R1792 T2526 T2528 det the,contributions
R1793 T2527 T2528 amod specific,contributions
R1795 T2528 T2525 dobj contributions,delineate
R1796 T2529 T2528 cc and,contributions
R1797 T2530 T2531 amod molecular,ordering
R1799 T2531 T2528 conj ordering,contributions
R1800 T2532 T2531 prep of,ordering
R1803 T2533 T2534 det the,Akt
R1806 T2534 T2537 nmod Akt,pathways
R1807 T2535 T2534 cc and,Akt
R1809 T2536 T2534 conj JNK,Akt
R1811 T2537 T2532 pobj pathways,of
R1813 T2538 T2537 amod downstream,pathways
R1816 T2539 T2538 prep from,downstream
R1818 T2540 T2541 nummod RIP1,kinase
R1819 T2541 T2539 pobj kinase,from
R1821 T2542 T2531 prep during,ordering
R1822 T2543 T2542 pobj necroptosis,during
R1823 T2544 T2521 punct .,expanded
R1825 T2545 T2546 poss Our,data
R1826 T2546 T2547 nsubj data,reveal
R1827 T2547 T2547 ROOT reveal,reveal
R1829 T2548 T2551 mark that,activated
R1830 T2549 T2551 nsubjpass Akt,activated
R1832 T2550 T2551 auxpass is,activated
R1833 T2551 T2547 ccomp activated,reveal
R1834 T2552 T2551 prep through,activated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T2191 235-244 Positive_regulation denotes activated
T2189 228-231 Protein denotes Akt
T2188 175-186 Protein denotes RIP1 kinase
T2187 146-149 Protein denotes JNK
T2186 138-141 Protein denotes Akt
R1479 T2189 T2191 themeOf Akt,activated

test3

Id Subject Object Predicate Lexical cue
T838 175-179 Protein denotes RIP1
T862 235-244 Positive_regulation denotes activated
T861 175-179 Protein denotes RIP1