PMC:3585731 / 41835-42033
Annnotations
testone
{"project":"testone","denotations":[{"id":"T20727","span":{"begin":159,"end":163},"obj":"Protein"},{"id":"T20726","span":{"begin":32,"end":36},"obj":"Protein"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
pmc-enju-pas
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bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T21054","span":{"begin":159,"end":163},"obj":"Protein"},{"id":"T21053","span":{"begin":32,"end":36},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T22935","span":{"begin":159,"end":163},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T22919","span":{"begin":32,"end":36},"obj":"http://www.uniprot.org/uniprot/Q13546"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T21179","span":{"begin":192,"end":197},"obj":"http://purl.obolibrary.org/obo/GO_0016265"},{"id":"T21167","span":{"begin":187,"end":197},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T21162","span":{"begin":164,"end":173},"obj":"http://purl.obolibrary.org/obo/GO_0009058"},{"id":"T21156","span":{"begin":133,"end":136},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T21136","span":{"begin":96,"end":107},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T21112","span":{"begin":96,"end":107},"obj":"http://purl.obolibrary.org/obo/GO_0070266"},{"id":"T21094","span":{"begin":58,"end":67},"obj":"http://purl.obolibrary.org/obo/GO_0023052"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T21267","span":{"begin":133,"end":136},"obj":"http://purl.obolibrary.org/obo/GO_0004705"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T21278","span":{"begin":116,"end":121},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
sentences
{"project":"sentences","denotations":[{"id":"T20935","span":{"begin":0,"end":198},"obj":"Sentence"},{"id":"T259","span":{"begin":0,"end":198},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
simple1
{"project":"simple1","denotations":[{"id":"T21306","span":{"begin":159,"end":163},"obj":"Protein"},{"id":"T21305","span":{"begin":32,"end":36},"obj":"Protein"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T22792","span":{"begin":164,"end":173},"obj":"Gene_expression"},{"id":"T22753","span":{"begin":159,"end":163},"obj":"Protein"},{"id":"T22752","span":{"begin":32,"end":36},"obj":"Protein"}],"relations":[{"id":"R15381","pred":"themeOf","subj":"T22753","obj":"T22792"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T23123","span":{"begin":164,"end":173},"obj":"Gene_expression"},{"id":"T23084","span":{"begin":159,"end":163},"obj":"Protein"},{"id":"T23083","span":{"begin":32,"end":36},"obj":"Protein"}],"relations":[{"id":"R15457","pred":"themeOf","subj":"T23084","obj":"T23123"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T22994","span":{"begin":149,"end":158},"obj":"Positive_regulation"},{"id":"T22993","span":{"begin":164,"end":173},"obj":"Gene_expression"},{"id":"T22954","span":{"begin":159,"end":163},"obj":"Protein"},{"id":"T22953","span":{"begin":32,"end":36},"obj":"Protein"}],"relations":[{"id":"R15406","pred":"themeOf","subj":"T22954","obj":"T22993"},{"id":"R15433","pred":"themeOf","subj":"T22993","obj":"T22994"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T23568","span":{"begin":32,"end":43},"obj":"Protein"},{"id":"T23534","span":{"begin":149,"end":173},"obj":"Protein"},{"id":"T23494","span":{"begin":133,"end":136},"obj":"Protein"},{"id":"T23478","span":{"begin":32,"end":36},"obj":"Protein"},{"id":"T23637","span":{"begin":133,"end":147},"obj":"Positive_regulation"}],"relations":[{"id":"R15647","pred":"themeOf","subj":"T23494","obj":"T23637"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T23719","span":{"begin":197,"end":198},"obj":"."},{"id":"T23718","span":{"begin":192,"end":197},"obj":"NN"},{"id":"T23717","span":{"begin":187,"end":191},"obj":"NN"},{"id":"T23716","span":{"begin":178,"end":186},"obj":"JJ"},{"id":"T23715","span":{"begin":174,"end":177},"obj":"CC"},{"id":"T23714","span":{"begin":164,"end":173},"obj":"NN"},{"id":"T23713","span":{"begin":159,"end":163},"obj":"NNP"},{"id":"T23712","span":{"begin":149,"end":158},"obj":"NN"},{"id":"T23711","span":{"begin":147,"end":148},"obj":","},{"id":"T23710","span":{"begin":137,"end":147},"obj":"NN"},{"id":"T23709","span":{"begin":133,"end":136},"obj":"NNP"},{"id":"T23708","span":{"begin":123,"end":132},"obj":"VBG"},{"id":"T23707","span":{"begin":121,"end":122},"obj":","},{"id":"T23706","span":{"begin":116,"end":121},"obj":"NNS"},{"id":"T23705","span":{"begin":111,"end":115},"obj":"CD"},{"id":"T23704","span":{"begin":108,"end":110},"obj":"IN"},{"id":"T23703","span":{"begin":96,"end":107},"obj":"NN"},{"id":"T23702","span":{"begin":89,"end":95},"obj":"IN"},{"id":"T23701","span":{"begin":82,"end":88},"obj":"NNS"},{"id":"T23700","span":{"begin":72,"end":81},"obj":"NN"},{"id":"T23699","span":{"begin":68,"end":71},"obj":"CC"},{"id":"T23698","span":{"begin":58,"end":67},"obj":"VBG"},{"id":"T23697","span":{"begin":47,"end":57},"obj":"JJ"},{"id":"T23696","span":{"begin":44,"end":46},"obj":"TO"},{"id":"T23695","span":{"begin":37,"end":43},"obj":"NN"},{"id":"T23694","span":{"begin":32,"end":36},"obj":"CD"},{"id":"T23693","span":{"begin":21,"end":31},"obj":"VBG"},{"id":"T23692","span":{"begin":16,"end":20},"obj":"NN"},{"id":"T23691","span":{"begin":14,"end":15},"obj":"DT"},{"id":"T23690","span":{"begin":5,"end":13},"obj":"VBZ"},{"id":"T23689","span":{"begin":0,"end":4},"obj":"DT"}],"relations":[{"id":"R15718","pred":"nsubj","subj":"T23689","obj":"T23690"},{"id":"R15719","pred":"ROOT","subj":"T23690","obj":"T23690"},{"id":"R15720","pred":"det","subj":"T23691","obj":"T23692"},{"id":"R15721","pred":"nmod","subj":"T23692","obj":"T23701"},{"id":"R15722","pred":"acl","subj":"T23693","obj":"T23692"},{"id":"R15723","pred":"nummod","subj":"T23694","obj":"T23695"},{"id":"R15724","pred":"dobj","subj":"T23695","obj":"T23693"},{"id":"R15725","pred":"prep","subj":"T23696","obj":"T23693"},{"id":"R15726","pred":"amod","subj":"T23697","obj":"T23698"},{"id":"R15727","pred":"pobj","subj":"T23698","obj":"T23696"},{"id":"R15728","pred":"cc","subj":"T23699","obj":"T23698"},{"id":"R15729","pred":"compound","subj":"T23700","obj":"T23701"},{"id":"R15730","pred":"dobj","subj":"T23701","obj":"T23690"},{"id":"R15731","pred":"prep","subj":"T23702","obj":"T23690"},{"id":"R15732","pred":"pobj","subj":"T23703","obj":"T23702"},{"id":"R15733","pred":"prep","subj":"T23704","obj":"T23703"},{"id":"R15734","pred":"nummod","subj":"T23705","obj":"T23706"},{"id":"R15735","pred":"pobj","subj":"T23706","obj":"T23704"},{"id":"R15736","pred":"punct","subj":"T23707","obj":"T23703"},{"id":"R15737","pred":"prep","subj":"T23708","obj":"T23703"},{"id":"R15738","pred":"compound","subj":"T23709","obj":"T23710"},{"id":"R15739","pred":"pobj","subj":"T23710","obj":"T23708"},{"id":"R15740","pred":"punct","subj":"T23711","obj":"T23710"},{"id":"R15741","pred":"compound","subj":"T23712","obj":"T23714"},{"id":"R15742","pred":"compound","subj":"T23713","obj":"T23714"},{"id":"R15743","pred":"conj","subj":"T23714","obj":"T23710"},{"id":"R15744","pred":"cc","subj":"T23715","obj":"T23714"},{"id":"R15745","pred":"amod","subj":"T23716","obj":"T23718"},{"id":"R15746","pred":"compound","subj":"T23717","obj":"T23718"},{"id":"R15747","pred":"conj","subj":"T23718","obj":"T23714"},{"id":"R15748","pred":"punct","subj":"T23719","obj":"T23690"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T23162","span":{"begin":137,"end":147},"obj":"Positive_regulation"},{"id":"T23161","span":{"begin":164,"end":173},"obj":"Gene_expression"},{"id":"T23160","span":{"begin":137,"end":147},"obj":"Positive_regulation"},{"id":"T23159","span":{"begin":21,"end":31},"obj":"Positive_regulation"},{"id":"T23158","span":{"begin":149,"end":163},"obj":"Protein"},{"id":"T23157","span":{"begin":133,"end":136},"obj":"Protein"},{"id":"T23156","span":{"begin":32,"end":43},"obj":"Protein"}],"relations":[{"id":"R15486","pred":"themeOf","subj":"T23156","obj":"T23159"},{"id":"R15487","pred":"themeOf","subj":"T23157","obj":"T23160"},{"id":"R15488","pred":"themeOf","subj":"T23158","obj":"T23161"},{"id":"R15489","pred":"themeOf","subj":"T23161","obj":"T23162"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}
test3
{"project":"test3","denotations":[{"id":"T20854","span":{"begin":164,"end":173},"obj":"Gene_expression"},{"id":"T20853","span":{"begin":159,"end":163},"obj":"Protein"},{"id":"T20852","span":{"begin":32,"end":36},"obj":"Protein"},{"id":"T20809","span":{"begin":159,"end":163},"obj":"Protein"},{"id":"T20808","span":{"begin":32,"end":36},"obj":"Protein"}],"relations":[{"id":"R13937","pred":"themeOf","subj":"T20853","obj":"T20854"}],"text":"This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death."}