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PMC:3585731 / 41835-42033 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T20727 159-163 Protein denotes TNFα
T20726 32-36 Protein denotes RIP1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21407 192-197 NN denotes death
T21406 187-191 NN denotes cell
T21405 178-186 JJ denotes eventual
T21404 174-177 CC denotes and
T21403 164-173 NN denotes synthesis
T21402 159-163 NN denotes TNFα
T21401 149-158 JJ denotes autocrine
T21400 147-148 -COMMA- denotes ,
T21399 137-147 NN denotes activation
T21398 133-136 NN denotes JNK
T21397 123-132 VB denotes including
T21396 121-122 -COMMA- denotes ,
T21395 116-121 NN denotes cells
T21394 111-115 NN denotes L929
T21393 108-110 IN denotes in
T21392 96-107 NN denotes necroptosis
T21391 89-95 IN denotes during
T21390 82-88 NN denotes events
T21389 72-81 NN denotes execution
T21388 68-71 CC denotes and
T21387 58-67 NN denotes signaling
T21386 47-57 JJ denotes downstream
T21385 44-46 TO denotes to
T21384 37-43 NN denotes kinase
T21383 32-36 NN denotes RIP1
T21382 21-31 VB denotes connecting
T21381 16-20 NN denotes link
T21380 14-15 DT denotes a
T21379 5-13 VB denotes provides
T21378 0-4 DT denotes This
R14023 T21378 T21379 arg1Of This,provides
R14024 T21381 T21379 arg2Of link,provides
R14025 T21381 T21380 arg1Of link,a
R14026 T21381 T21382 arg1Of link,connecting
R14027 T21382 T21385 arg1Of connecting,to
R14028 T21382 T21391 arg1Of connecting,during
R14029 T21384 T21382 arg2Of kinase,connecting
R14030 T21384 T21383 arg1Of kinase,RIP1
R14031 T21387 T21388 arg1Of signaling,and
R14032 T21389 T21388 arg2Of execution,and
R14033 T21390 T21385 arg2Of events,to
R14034 T21390 T21386 arg1Of events,downstream
R14035 T21390 T21387 arg1Of events,signaling
R14036 T21390 T21389 arg1Of events,execution
R14037 T21392 T21391 arg2Of necroptosis,during
R14038 T21392 T21393 arg1Of necroptosis,in
R14039 T21395 T21393 arg2Of cells,in
R14040 T21395 T21394 arg1Of cells,L929
R14041 T21395 T21396 arg1Of cells,","
R14042 T21395 T21397 arg1Of cells,including
R14043 T21399 T21398 arg1Of activation,JNK
R14044 T21399 T21400 arg1Of activation,","
R14045 T21400 T21404 arg1Of ",",and
R14046 T21403 T21400 arg2Of synthesis,","
R14047 T21403 T21401 arg1Of synthesis,autocrine
R14048 T21403 T21402 arg1Of synthesis,TNFα
R14049 T21404 T21397 arg2Of and,including
R14050 T21407 T21404 arg2Of death,and
R14051 T21407 T21405 arg1Of death,eventual
R14052 T21407 T21406 arg1Of death,cell

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T21054 159-163 Protein denotes TNFα
T21053 32-36 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T22935 159-163 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T22919 32-36 http://www.uniprot.org/uniprot/Q13546 denotes RIP1

GO-BP

Id Subject Object Predicate Lexical cue
T21179 192-197 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T21167 187-197 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T21162 164-173 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T21156 133-136 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T21136 96-107 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T21112 96-107 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T21094 58-67 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-MF

Id Subject Object Predicate Lexical cue
T21267 133-136 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T21278 116-121 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T20935 0-198 Sentence denotes This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death.
T259 0-198 Sentence denotes This provides a link connecting RIP1 kinase to downstream signaling and execution events during necroptosis in L929 cells, including JNK activation, autocrine TNFα synthesis and eventual cell death.

simple1

Id Subject Object Predicate Lexical cue
T21306 159-163 Protein denotes TNFα
T21305 32-36 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T22792 164-173 Gene_expression denotes synthesis
T22753 159-163 Protein denotes TNFα
T22752 32-36 Protein denotes RIP1
R15381 T22753 T22792 themeOf TNFα,synthesis

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T23123 164-173 Gene_expression denotes synthesis
T23084 159-163 Protein denotes TNFα
T23083 32-36 Protein denotes RIP1
R15457 T23084 T23123 themeOf TNFα,synthesis

DLUT931

Id Subject Object Predicate Lexical cue
T22994 149-158 Positive_regulation denotes autocrine
T22993 164-173 Gene_expression denotes synthesis
T22954 159-163 Protein denotes TNFα
T22953 32-36 Protein denotes RIP1
R15406 T22954 T22993 themeOf TNFα,synthesis
R15433 T22993 T22994 themeOf synthesis,autocrine

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T23568 32-43 Protein denotes RIP1 kinase
T23534 149-173 Protein denotes autocrine TNFα synthesis
T23494 133-136 Protein denotes JNK
T23478 32-36 Protein denotes RIP1
T23637 133-147 Positive_regulation denotes JNK activation
R15647 T23494 T23637 themeOf JNK,JNK activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T23719 197-198 . denotes .
T23718 192-197 NN denotes death
T23717 187-191 NN denotes cell
T23716 178-186 JJ denotes eventual
T23715 174-177 CC denotes and
T23714 164-173 NN denotes synthesis
T23713 159-163 NNP denotes TNFα
T23712 149-158 NN denotes autocrine
T23711 147-148 , denotes ,
T23710 137-147 NN denotes activation
T23709 133-136 NNP denotes JNK
T23708 123-132 VBG denotes including
T23707 121-122 , denotes ,
T23706 116-121 NNS denotes cells
T23705 111-115 CD denotes L929
T23704 108-110 IN denotes in
T23703 96-107 NN denotes necroptosis
T23702 89-95 IN denotes during
T23701 82-88 NNS denotes events
T23700 72-81 NN denotes execution
T23699 68-71 CC denotes and
T23698 58-67 VBG denotes signaling
T23697 47-57 JJ denotes downstream
T23696 44-46 TO denotes to
T23695 37-43 NN denotes kinase
T23694 32-36 CD denotes RIP1
T23693 21-31 VBG denotes connecting
T23692 16-20 NN denotes link
T23691 14-15 DT denotes a
T23690 5-13 VBZ denotes provides
T23689 0-4 DT denotes This
R15718 T23689 T23690 nsubj This,provides
R15719 T23690 T23690 ROOT provides,provides
R15720 T23691 T23692 det a,link
R15721 T23692 T23701 nmod link,events
R15722 T23693 T23692 acl connecting,link
R15723 T23694 T23695 nummod RIP1,kinase
R15724 T23695 T23693 dobj kinase,connecting
R15725 T23696 T23693 prep to,connecting
R15726 T23697 T23698 amod downstream,signaling
R15727 T23698 T23696 pobj signaling,to
R15728 T23699 T23698 cc and,signaling
R15729 T23700 T23701 compound execution,events
R15730 T23701 T23690 dobj events,provides
R15731 T23702 T23690 prep during,provides
R15732 T23703 T23702 pobj necroptosis,during
R15733 T23704 T23703 prep in,necroptosis
R15734 T23705 T23706 nummod L929,cells
R15735 T23706 T23704 pobj cells,in
R15736 T23707 T23703 punct ",",necroptosis
R15737 T23708 T23703 prep including,necroptosis
R15738 T23709 T23710 compound JNK,activation
R15739 T23710 T23708 pobj activation,including
R15740 T23711 T23710 punct ",",activation
R15741 T23712 T23714 compound autocrine,synthesis
R15742 T23713 T23714 compound TNFα,synthesis
R15743 T23714 T23710 conj synthesis,activation
R15744 T23715 T23714 cc and,synthesis
R15745 T23716 T23718 amod eventual,death
R15746 T23717 T23718 compound cell,death
R15747 T23718 T23714 conj death,synthesis
R15748 T23719 T23690 punct .,provides

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T23162 137-147 Positive_regulation denotes activation
T23161 164-173 Gene_expression denotes synthesis
T23160 137-147 Positive_regulation denotes activation
T23159 21-31 Positive_regulation denotes connecting
T23158 149-163 Protein denotes autocrine TNFα
T23157 133-136 Protein denotes JNK
T23156 32-43 Protein denotes RIP1 kinase
R15486 T23156 T23159 themeOf RIP1 kinase,connecting
R15487 T23157 T23160 themeOf JNK,activation
R15488 T23158 T23161 themeOf autocrine TNFα,synthesis
R15489 T23161 T23162 themeOf synthesis,activation

test3

Id Subject Object Predicate Lexical cue
T20854 164-173 Gene_expression denotes synthesis
T20853 159-163 Protein denotes TNFα
T20852 32-36 Protein denotes RIP1
T20809 159-163 Protein denotes TNFα
T20808 32-36 Protein denotes RIP1
R13937 T20853 T20854 themeOf TNFα,synthesis