PMC:3585731 / 369-614 JSONTXT

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    testone

    {"project":"testone","denotations":[{"id":"T23","span":{"begin":224,"end":234},"obj":"Gene_expression"},{"id":"T22","span":{"begin":211,"end":215},"obj":"Regulation"},{"id":"T15","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T14","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T13","span":{"begin":74,"end":104},"obj":"Protein"}],"relations":[{"id":"R5","pred":"themeOf","subj":"T23","obj":"T22"},{"id":"R1","pred":"equivalentTo","subj":"T14","obj":"T13"},{"id":"R2","pred":"themeOf","subj":"T15","obj":"T23"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T236","span":{"begin":236,"end":242},"obj":"IN"},{"id":"T235","span":{"begin":224,"end":234},"obj":"NN"},{"id":"T234","span":{"begin":219,"end":223},"obj":"NN"},{"id":"T233","span":{"begin":216,"end":218},"obj":"IN"},{"id":"T232","span":{"begin":211,"end":215},"obj":"NN"},{"id":"T231","span":{"begin":207,"end":210},"obj":"JJ"},{"id":"T230","span":{"begin":205,"end":206},"obj":"DT"},{"id":"T229","span":{"begin":199,"end":204},"obj":"VB"},{"id":"T228","span":{"begin":195,"end":198},"obj":"CC"},{"id":"T227","span":{"begin":189,"end":194},"obj":"NN"},{"id":"T226","span":{"begin":184,"end":188},"obj":"NN"},{"id":"T225","span":{"begin":181,"end":183},"obj":"IN"},{"id":"T224","span":{"begin":169,"end":180},"obj":"NN"},{"id":"T223","span":{"begin":165,"end":168},"obj":"IN"},{"id":"T222","span":{"begin":156,"end":164},"obj":"JJ"},{"id":"T221","span":{"begin":153,"end":155},"obj":"VB"},{"id":"T220","span":{"begin":144,"end":152},"obj":"NN"},{"id":"T219","span":{"begin":137,"end":143},"obj":"NN"},{"id":"T218","span":{"begin":133,"end":136},"obj":"NN"},{"id":"T217","span":{"begin":128,"end":132},"obj":"IN"},{"id":"T216","span":{"begin":123,"end":127},"obj":"VB"},{"id":"T215","span":{"begin":120,"end":122},"obj":"PRP"},{"id":"T214","span":{"begin":112,"end":118},"obj":"NN"},{"id":"T213","span":{"begin":110,"end":111},"obj":"-RRB-"},{"id":"T212","span":{"begin":106,"end":110},"obj":"NN"},{"id":"T211","span":{"begin":105,"end":106},"obj":"-LRB-"},{"id":"T210","span":{"begin":95,"end":104},"obj":"NN"},{"id":"T209","span":{"begin":83,"end":94},"obj":"NN"},{"id":"T208","span":{"begin":74,"end":82},"obj":"NN"},{"id":"T207","span":{"begin":65,"end":73},"obj":"NN"},{"id":"T206","span":{"begin":53,"end":64},"obj":"NN"},{"id":"T205","span":{"begin":49,"end":52},"obj":"DT"},{"id":"T204","span":{"begin":46,"end":48},"obj":"IN"},{"id":"T203","span":{"begin":35,"end":45},"obj":"VB"},{"id":"T202","span":{"begin":24,"end":34},"obj":"NN"},{"id":"T201","span":{"begin":14,"end":23},"obj":"NN"},{"id":"T200","span":{"begin":10,"end":13},"obj":"DT"}],"relations":[{"id":"R62","pred":"arg1Of","subj":"T202","obj":"T200"},{"id":"R63","pred":"arg1Of","subj":"T202","obj":"T201"},{"id":"R64","pred":"arg2Of","subj":"T202","obj":"T203"},{"id":"R65","pred":"arg2Of","subj":"T212","obj":"T211"},{"id":"R66","pred":"arg3Of","subj":"T213","obj":"T211"},{"id":"R67","pred":"arg1Of","subj":"T214","obj":"T203"},{"id":"R68","pred":"arg2Of","subj":"T214","obj":"T204"},{"id":"R69","pred":"arg1Of","subj":"T214","obj":"T205"},{"id":"R70","pred":"arg1Of","subj":"T214","obj":"T206"},{"id":"R71","pred":"arg1Of","subj":"T214","obj":"T207"},{"id":"R72","pred":"arg1Of","subj":"T214","obj":"T208"},{"id":"R73","pred":"arg1Of","subj":"T214","obj":"T209"},{"id":"R74","pred":"arg1Of","subj":"T214","obj":"T210"},{"id":"R75","pred":"arg1Of","subj":"T214","obj":"T211"},{"id":"R76","pred":"arg1Of","subj":"T215","obj":"T216"},{"id":"R77","pred":"arg1Of","subj":"T220","obj":"T218"},{"id":"R78","pred":"arg1Of","subj":"T220","obj":"T219"},{"id":"R79","pred":"arg1Of","subj":"T220","obj":"T221"},{"id":"R80","pred":"arg1Of","subj":"T220","obj":"T222"},{"id":"R81","pred":"arg1Of","subj":"T220","obj":"T229"},{"id":"R82","pred":"arg1Of","subj":"T221","obj":"T225"},{"id":"R83","pred":"arg1Of","subj":"T221","obj":"T228"},{"id":"R84","pred":"arg2Of","subj":"T222","obj":"T221"},{"id":"R85","pred":"arg1Of","subj":"T222","obj":"T223"},{"id":"R86","pred":"arg2Of","subj":"T224","obj":"T223"},{"id":"R87","pred":"arg2Of","subj":"T227","obj":"T225"},{"id":"R88","pred":"arg1Of","subj":"T227","obj":"T226"},{"id":"R89","pred":"arg2Of","subj":"T228","obj":"T216"},{"id":"R90","pred":"arg1Of","subj":"T228","obj":"T217"},{"id":"R91","pred":"arg2Of","subj":"T229","obj":"T228"},{"id":"R92","pred":"arg1Of","subj":"T229","obj":"T233"},{"id":"R93","pred":"arg2Of","subj":"T232","obj":"T229"},{"id":"R94","pred":"arg1Of","subj":"T232","obj":"T230"},{"id":"R95","pred":"arg1Of","subj":"T232","obj":"T231"},{"id":"R96","pred":"arg2Of","subj":"T235","obj":"T233"},{"id":"R97","pred":"arg1Of","subj":"T235","obj":"T234"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T90","span":{"begin":74,"end":104},"obj":"Protein"},{"id":"T91","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T92","span":{"begin":219,"end":223},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T406","span":{"begin":106,"end":110},"obj":"http://www.uniprot.org/uniprot/Q13546"},{"id":"T402","span":{"begin":219,"end":223},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T395","span":{"begin":133,"end":136},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T388","span":{"begin":133,"end":136},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T381","span":{"begin":133,"end":136},"obj":"http://www.uniprot.org/uniprot/P31749"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T129","span":{"begin":137,"end":152},"obj":"http://purl.obolibrary.org/obo/GO_0016301"},{"id":"T127","span":{"begin":14,"end":23},"obj":"http://purl.obolibrary.org/obo/GO_0023052"},{"id":"T110","span":{"begin":169,"end":180},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T109","span":{"begin":53,"end":64},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T102","span":{"begin":169,"end":180},"obj":"http://purl.obolibrary.org/obo/GO_0070266"},{"id":"T101","span":{"begin":53,"end":64},"obj":"http://purl.obolibrary.org/obo/GO_0070266"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T135","span":{"begin":137,"end":152},"obj":"http://purl.obolibrary.org/obo/GO_0016301"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    sentences

    {"project":"sentences","denotations":[{"id":"T63","span":{"begin":120,"end":235},"obj":"Sentence"},{"id":"T6","span":{"begin":120,"end":235},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    simple1

    {"project":"simple1","denotations":[{"id":"T145","span":{"begin":74,"end":104},"obj":"Protein"},{"id":"T146","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T147","span":{"begin":219,"end":223},"obj":"Protein"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T355","span":{"begin":74,"end":104},"obj":"Protein"},{"id":"T356","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T357","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T366","span":{"begin":211,"end":215},"obj":"Regulation"},{"id":"T367","span":{"begin":224,"end":234},"obj":"Gene_expression"}],"relations":[{"id":"R452","pred":"themeOf","subj":"T357","obj":"T367"},{"id":"R456","pred":"themeOf","subj":"T367","obj":"T366"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T443","span":{"begin":74,"end":104},"obj":"Protein"},{"id":"T444","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T445","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T454","span":{"begin":224,"end":234},"obj":"Gene_expression"}],"relations":[{"id":"R471","pred":"themeOf","subj":"T445","obj":"T454"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T424","span":{"begin":211,"end":215},"obj":"Regulation"},{"id":"T412","span":{"begin":74,"end":104},"obj":"Protein"},{"id":"T413","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T414","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T423","span":{"begin":224,"end":234},"obj":"Gene_expression"}],"relations":[{"id":"R459","pred":"themeOf","subj":"T414","obj":"T423"},{"id":"R463","pred":"themeOf","subj":"T423","obj":"T424"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T764","span":{"begin":219,"end":234},"obj":"Gene_expression"},{"id":"T748","span":{"begin":46,"end":118},"obj":"Protein"},{"id":"T746","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T743","span":{"begin":133,"end":136},"obj":"Protein"},{"id":"T742","span":{"begin":133,"end":143},"obj":"Protein"},{"id":"T736","span":{"begin":74,"end":111},"obj":"Protein"},{"id":"T734","span":{"begin":219,"end":223},"obj":"Protein"}],"relations":[{"id":"R431","pred":"themeOf","subj":"T734","obj":"T764"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T573","span":{"begin":236,"end":242},"obj":"IN"},{"id":"T572","span":{"begin":234,"end":235},"obj":"."},{"id":"T571","span":{"begin":224,"end":234},"obj":"NN"},{"id":"T570","span":{"begin":219,"end":223},"obj":"JJ"},{"id":"T569","span":{"begin":216,"end":218},"obj":"IN"},{"id":"T568","span":{"begin":211,"end":215},"obj":"NN"},{"id":"T567","span":{"begin":207,"end":210},"obj":"JJ"},{"id":"T566","span":{"begin":205,"end":206},"obj":"DT"},{"id":"T565","span":{"begin":199,"end":204},"obj":"VBZ"},{"id":"T564","span":{"begin":195,"end":198},"obj":"CC"},{"id":"T563","span":{"begin":189,"end":194},"obj":"NNS"},{"id":"T562","span":{"begin":184,"end":188},"obj":"CD"},{"id":"T561","span":{"begin":181,"end":183},"obj":"IN"},{"id":"T560","span":{"begin":169,"end":180},"obj":"NN"},{"id":"T559","span":{"begin":165,"end":168},"obj":"IN"},{"id":"T558","span":{"begin":156,"end":164},"obj":"JJ"},{"id":"T557","span":{"begin":153,"end":155},"obj":"VBZ"},{"id":"T556","span":{"begin":144,"end":152},"obj":"NN"},{"id":"T555","span":{"begin":137,"end":143},"obj":"NN"},{"id":"T554","span":{"begin":133,"end":136},"obj":"NNP"},{"id":"T553","span":{"begin":128,"end":132},"obj":"IN"},{"id":"T552","span":{"begin":123,"end":127},"obj":"VBP"},{"id":"T551","span":{"begin":120,"end":122},"obj":"PRP"},{"id":"T550","span":{"begin":118,"end":119},"obj":"."},{"id":"T549","span":{"begin":112,"end":118},"obj":"NN"},{"id":"T548","span":{"begin":110,"end":111},"obj":"-RRB-"},{"id":"T547","span":{"begin":106,"end":110},"obj":"CD"},{"id":"T546","span":{"begin":105,"end":106},"obj":"-LRB-"},{"id":"T545","span":{"begin":95,"end":104},"obj":"NN"},{"id":"T544","span":{"begin":83,"end":94},"obj":"VBG"},{"id":"T543","span":{"begin":74,"end":82},"obj":"NN"},{"id":"T542","span":{"begin":65,"end":73},"obj":"NN"},{"id":"T541","span":{"begin":53,"end":64},"obj":"NN"},{"id":"T540","span":{"begin":49,"end":52},"obj":"DT"},{"id":"T539","span":{"begin":46,"end":48},"obj":"IN"},{"id":"T538","span":{"begin":35,"end":45},"obj":"VBN"},{"id":"T537","span":{"begin":24,"end":34},"obj":"NNS"},{"id":"T536","span":{"begin":14,"end":23},"obj":"VBG"},{"id":"T535","span":{"begin":10,"end":13},"obj":"DT"}],"relations":[{"id":"R275","pred":"det","subj":"T535","obj":"T537"},{"id":"R276","pred":"amod","subj":"T536","obj":"T537"},{"id":"R278","pred":"acl","subj":"T538","obj":"T537"},{"id":"R279","pred":"agent","subj":"T539","obj":"T538"},{"id":"R280","pred":"det","subj":"T540","obj":"T543"},{"id":"R281","pred":"amod","subj":"T541","obj":"T542"},{"id":"R282","pred":"compound","subj":"T542","obj":"T543"},{"id":"R283","pred":"pobj","subj":"T543","obj":"T539"},{"id":"R284","pred":"acl","subj":"T544","obj":"T543"},{"id":"R285","pred":"dobj","subj":"T545","obj":"T544"},{"id":"R286","pred":"punct","subj":"T546","obj":"T545"},{"id":"R287","pred":"appos","subj":"T547","obj":"T545"},{"id":"R288","pred":"punct","subj":"T548","obj":"T545"},{"id":"R289","pred":"conj","subj":"T549","obj":"T543"},{"id":"R291","pred":"nsubj","subj":"T551","obj":"T552"},{"id":"R292","pred":"ROOT","subj":"T552","obj":"T552"},{"id":"R293","pred":"mark","subj":"T553","obj":"T557"},{"id":"R294","pred":"compound","subj":"T554","obj":"T556"},{"id":"R295","pred":"compound","subj":"T555","obj":"T556"},{"id":"R296","pred":"nsubj","subj":"T556","obj":"T557"},{"id":"R297","pred":"ccomp","subj":"T557","obj":"T552"},{"id":"R298","pred":"acomp","subj":"T558","obj":"T557"},{"id":"R299","pred":"prep","subj":"T559","obj":"T558"},{"id":"R300","pred":"pobj","subj":"T560","obj":"T559"},{"id":"R301","pred":"prep","subj":"T561","obj":"T557"},{"id":"R302","pred":"nummod","subj":"T562","obj":"T563"},{"id":"R303","pred":"pobj","subj":"T563","obj":"T561"},{"id":"R304","pred":"cc","subj":"T564","obj":"T557"},{"id":"R305","pred":"conj","subj":"T565","obj":"T557"},{"id":"R306","pred":"det","subj":"T566","obj":"T568"},{"id":"R307","pred":"amod","subj":"T567","obj":"T568"},{"id":"R308","pred":"dobj","subj":"T568","obj":"T565"},{"id":"R309","pred":"prep","subj":"T569","obj":"T568"},{"id":"R310","pred":"amod","subj":"T570","obj":"T571"},{"id":"R311","pred":"pobj","subj":"T571","obj":"T569"},{"id":"R312","pred":"punct","subj":"T572","obj":"T552"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T468","span":{"begin":224,"end":234},"obj":"Gene_expression"},{"id":"T467","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T466","span":{"begin":133,"end":143},"obj":"Protein"},{"id":"T465","span":{"begin":35,"end":45},"obj":"Regulation"},{"id":"T464","span":{"begin":35,"end":45},"obj":"Regulation"},{"id":"T463","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T462","span":{"begin":65,"end":104},"obj":"Protein"}],"relations":[{"id":"R216","pred":"themeOf","subj":"T462","obj":"T464"},{"id":"R217","pred":"themeOf","subj":"T463","obj":"T465"},{"id":"R218","pred":"themeOf","subj":"T467","obj":"T468"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}

    test3

    {"project":"test3","denotations":[{"id":"T48","span":{"begin":224,"end":234},"obj":"Gene_expression"},{"id":"T47","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T46","span":{"begin":211,"end":215},"obj":"Regulation"},{"id":"T45","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T44","span":{"begin":74,"end":104},"obj":"Protein"},{"id":"T43","span":{"begin":35,"end":45},"obj":"Regulation"},{"id":"T33","span":{"begin":219,"end":223},"obj":"Protein"},{"id":"T32","span":{"begin":106,"end":110},"obj":"Protein"},{"id":"T31","span":{"begin":74,"end":104},"obj":"Protein"}],"relations":[{"id":"R8","pred":"causeOf","subj":"T44","obj":"T43"},{"id":"R9","pred":"equivalentTo","subj":"T45","obj":"T44"},{"id":"R10","pred":"themeOf","subj":"T47","obj":"T48"},{"id":"R11","pred":"themeOf","subj":"T48","obj":"T46"}],"text":"estigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase. We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production. During ne"}