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PMC:3585731 / 369-614 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T23 224-234 Gene_expression denotes production
T22 211-215 Regulation denotes role
T15 219-223 Protein denotes TNFα
T14 106-110 Protein denotes RIP1
T13 74-104 Protein denotes receptor interacting protein-1
R5 T23 T22 themeOf production,role
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1
R2 T15 T23 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T236 236-242 IN denotes During
T235 224-234 NN denotes production
T234 219-223 NN denotes TNFα
T233 216-218 IN denotes in
T232 211-215 NN denotes role
T231 207-210 JJ denotes key
T230 205-206 DT denotes a
T229 199-204 VB denotes plays
T228 195-198 CC denotes and
T227 189-194 NN denotes cells
T226 184-188 NN denotes L929
T225 181-183 IN denotes in
T224 169-180 NN denotes necroptosis
T223 165-168 IN denotes for
T222 156-164 JJ denotes critical
T221 153-155 VB denotes is
T220 144-152 NN denotes activity
T219 137-143 NN denotes kinase
T218 133-136 NN denotes Akt
T217 128-132 IN denotes that
T216 123-127 VB denotes show
T215 120-122 PRP denotes We
T214 112-118 NN denotes kinase
T213 110-111 -RRB- denotes )
T212 106-110 NN denotes RIP1
T211 105-106 -LRB- denotes (
T210 95-104 NN denotes protein-1
T209 83-94 NN denotes interacting
T208 74-82 NN denotes receptor
T207 65-73 NN denotes mediator
T206 53-64 NN denotes necroptosis
T205 49-52 DT denotes the
T204 46-48 IN denotes by
T203 35-45 VB denotes controlled
T202 24-34 NN denotes mechanisms
T201 14-23 NN denotes signaling
T200 10-13 DT denotes the
R62 T202 T200 arg1Of mechanisms,the
R63 T202 T201 arg1Of mechanisms,signaling
R64 T202 T203 arg2Of mechanisms,controlled
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R67 T214 T203 arg1Of kinase,controlled
R68 T214 T204 arg2Of kinase,by
R69 T214 T205 arg1Of kinase,the
R70 T214 T206 arg1Of kinase,necroptosis
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is
R80 T220 T222 arg1Of activity,critical
R81 T220 T229 arg1Of activity,plays
R82 T221 T225 arg1Of is,in
R83 T221 T228 arg1Of is,and
R84 T222 T221 arg2Of critical,is
R85 T222 T223 arg1Of critical,for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R89 T228 T216 arg2Of and,show
R90 T228 T217 arg1Of and,that
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key
R96 T235 T233 arg2Of production,in
R97 T235 T234 arg1Of production,TNFα

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T90 74-104 Protein denotes receptor interacting protein-1
T91 106-110 Protein denotes RIP1
T92 219-223 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T406 106-110 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 219-223 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T395 133-136 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T388 133-136 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 133-136 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T129 137-152 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T127 14-23 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T110 169-180 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T109 53-64 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T102 169-180 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T101 53-64 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 137-152 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

sentences

Id Subject Object Predicate Lexical cue
T63 120-235 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.
T6 120-235 Sentence denotes We show that Akt kinase activity is critical for necroptosis in L929 cells and plays a key role in TNFα production.

simple1

Id Subject Object Predicate Lexical cue
T145 74-104 Protein denotes receptor interacting protein-1
T146 106-110 Protein denotes RIP1
T147 219-223 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 74-104 Protein denotes receptor interacting protein-1
T356 106-110 Protein denotes RIP1
T357 219-223 Protein denotes TNFα
T366 211-215 Regulation denotes role
T367 224-234 Gene_expression denotes production
R452 T357 T367 themeOf TNFα,production
R456 T367 T366 themeOf production,role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 74-104 Protein denotes receptor interacting protein-1
T444 106-110 Protein denotes RIP1
T445 219-223 Protein denotes TNFα
T454 224-234 Gene_expression denotes production
R471 T445 T454 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T424 211-215 Regulation denotes role
T412 74-104 Protein denotes receptor interacting protein-1
T413 106-110 Protein denotes RIP1
T414 219-223 Protein denotes TNFα
T423 224-234 Gene_expression denotes production
R459 T414 T423 themeOf TNFα,production
R463 T423 T424 themeOf production,role

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T764 219-234 Gene_expression denotes TNFα production
T748 46-118 Protein denotes by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase
T746 106-110 Protein denotes RIP1
T743 133-136 Protein denotes Akt
T742 133-143 Protein denotes Akt kinase
T736 74-111 Protein denotes receptor interacting protein-1 (RIP1)
T734 219-223 Protein denotes TNFα
R431 T734 T764 themeOf TNFα,TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T573 236-242 IN denotes During
T572 234-235 . denotes .
T571 224-234 NN denotes production
T570 219-223 JJ denotes TNFα
T569 216-218 IN denotes in
T568 211-215 NN denotes role
T567 207-210 JJ denotes key
T566 205-206 DT denotes a
T565 199-204 VBZ denotes plays
T564 195-198 CC denotes and
T563 189-194 NNS denotes cells
T562 184-188 CD denotes L929
T561 181-183 IN denotes in
T560 169-180 NN denotes necroptosis
T559 165-168 IN denotes for
T558 156-164 JJ denotes critical
T557 153-155 VBZ denotes is
T556 144-152 NN denotes activity
T555 137-143 NN denotes kinase
T554 133-136 NNP denotes Akt
T553 128-132 IN denotes that
T552 123-127 VBP denotes show
T551 120-122 PRP denotes We
T550 118-119 . denotes .
T549 112-118 NN denotes kinase
T548 110-111 -RRB- denotes )
T547 106-110 CD denotes RIP1
T546 105-106 -LRB- denotes (
T545 95-104 NN denotes protein-1
T544 83-94 VBG denotes interacting
T543 74-82 NN denotes receptor
T542 65-73 NN denotes mediator
T541 53-64 NN denotes necroptosis
T540 49-52 DT denotes the
T539 46-48 IN denotes by
T538 35-45 VBN denotes controlled
T537 24-34 NNS denotes mechanisms
T536 14-23 VBG denotes signaling
T535 10-13 DT denotes the
R275 T535 T537 det the,mechanisms
R276 T536 T537 amod signaling,mechanisms
R278 T538 T537 acl controlled,mechanisms
R279 T539 T538 agent by,controlled
R280 T540 T543 det the,receptor
R281 T541 T542 amod necroptosis,mediator
R282 T542 T543 compound mediator,receptor
R283 T543 T539 pobj receptor,by
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R297 T557 T552 ccomp is,show
R298 T558 T557 acomp critical,is
R299 T559 T558 prep for,critical
R300 T560 T559 pobj necroptosis,for
R301 T561 T557 prep in,is
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R304 T564 T557 cc and,is
R305 T565 T557 conj plays,is
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role
R310 T570 T571 amod TNFα,production
R311 T571 T569 pobj production,in
R312 T572 T552 punct .,show

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T468 224-234 Gene_expression denotes production
T467 219-223 Protein denotes TNFα
T466 133-143 Protein denotes Akt kinase
T465 35-45 Regulation denotes controlled
T464 35-45 Regulation denotes controlled
T463 106-110 Protein denotes RIP1
T462 65-104 Protein denotes mediator receptor interacting protein-1
R216 T462 T464 themeOf mediator receptor interacting protein-1,controlled
R217 T463 T465 themeOf RIP1,controlled
R218 T467 T468 themeOf TNFα,production

test3

Id Subject Object Predicate Lexical cue
T48 224-234 Gene_expression denotes production
T47 219-223 Protein denotes TNFα
T46 211-215 Regulation denotes role
T45 106-110 Protein denotes RIP1
T44 74-104 Protein denotes receptor interacting protein-1
T43 35-45 Regulation denotes controlled
T33 219-223 Protein denotes TNFα
T32 106-110 Protein denotes RIP1
T31 74-104 Protein denotes receptor interacting protein-1
R8 T44 T43 causeOf receptor interacting protein-1,controlled
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1
R10 T47 T48 themeOf TNFα,production
R11 T48 T46 themeOf production,role