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PMC:3585731 / 31557-31793 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T13481 150-157 Protein denotes Myr-Akt
T13480 96-100 Protein denotes TNFα
T13530 190-197 Regulation denotes effects
T13529 140-149 Gene_expression denotes expressed
R8905 T13481 T13529 themeOf Myr-Akt,expressed

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T14521 224-235 NN denotes necroptosis
T14520 221-223 IN denotes on
T14519 211-220 NN denotes mutations
T14518 207-210 NN denotes Akt
T14517 201-206 JJ denotes other
T14516 198-200 IN denotes of
T14515 190-197 NN denotes effects
T14514 186-189 DT denotes the
T14513 178-185 VB denotes examine
T14512 175-177 TO denotes to
T14511 172-174 PRP denotes us
T14510 164-171 VB denotes allowed
T14509 159-163 DT denotes This
T14508 150-158 NNP denotes Myr-Akt.
T14507 140-149 VB denotes expressed
T14506 135-139 NN denotes over
T14505 131-134 DT denotes the
T14504 128-130 IN denotes on
T14503 118-127 JJ denotes dependent
T14502 113-117 VB denotes were
T14501 111-112 -RRB- denotes )
T14500 101-111 NN denotes production
T14499 96-100 NN denotes TNFα
T14498 94-95 -COMMA- denotes ,
T14497 84-94 NN denotes activation
T14496 80-83 NN denotes JNK
T14495 78-79 -COMMA- denotes ,
T14494 73-78 NN denotes death
T14493 68-72 NN denotes cell
T14492 67-68 -LRB- denotes (
T14491 60-66 NN denotes events
T14490 49-59 JJ denotes downstream
T14489 32-48 JJ denotes zVAD.fmk-induced
T14488 28-31 DT denotes all
T14487 17-27 NN denotes conditions
T14486 12-16 JJ denotes free
T14485 6-11 NN denotes serum
T14484 0-5 IN denotes Under
R9467 T14487 T14484 arg2Of conditions,Under
R9468 T14487 T14485 arg1Of conditions,serum
R9469 T14487 T14486 arg1Of conditions,free
R9470 T14491 T14488 arg1Of events,all
R9471 T14491 T14489 arg1Of events,zVAD.fmk-induced
R9472 T14491 T14490 arg1Of events,downstream
R9473 T14491 T14492 arg1Of events,(
R9474 T14491 T14502 arg1Of events,were
R9475 T14491 T14503 arg1Of events,dependent
R9476 T14494 T14492 arg2Of death,(
R9477 T14494 T14493 arg1Of death,cell
R9478 T14494 T14495 arg1Of death,","
R9479 T14494 T14498 arg1Of death,","
R9480 T14497 T14495 arg2Of activation,","
R9481 T14497 T14496 arg1Of activation,JNK
R9482 T14500 T14498 arg2Of production,","
R9483 T14500 T14499 arg1Of production,TNFα
R9484 T14501 T14492 arg3Of ),(
R9485 T14502 T14484 arg1Of were,Under
R9486 T14502 T14504 arg1Of were,on
R9487 T14503 T14502 arg2Of dependent,were
R9488 T14506 T14505 arg1Of over,the
R9489 T14506 T14507 arg1Of over,expressed
R9490 T14507 T14504 arg2Of expressed,on
R9491 T14508 T14507 arg2Of Myr-Akt.,expressed
R9492 T14508 T14510 arg1Of Myr-Akt.,allowed
R9493 T14510 T14507 arg3Of allowed,expressed
R9494 T14510 T14509 arg1Of allowed,This
R9495 T14511 T14510 arg2Of us,allowed
R9496 T14511 T14513 arg1Of us,examine
R9497 T14513 T14510 arg3Of examine,allowed
R9498 T14513 T14512 arg1Of examine,to
R9499 T14515 T14513 arg2Of effects,examine
R9500 T14515 T14514 arg1Of effects,the
R9501 T14515 T14516 arg1Of effects,of
R9502 T14515 T14520 arg1Of effects,on
R9503 T14519 T14516 arg2Of mutations,of
R9504 T14519 T14517 arg1Of mutations,other
R9505 T14519 T14518 arg1Of mutations,Akt
R9506 T14521 T14520 arg2Of necroptosis,on

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T13862 150-157 Protein denotes Myr-Akt
T13861 96-100 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15044 207-210 http://www.uniprot.org/uniprot/P31751 denotes Akt
T15043 154-157 http://www.uniprot.org/uniprot/P31751 denotes Akt
T15009 207-210 http://www.uniprot.org/uniprot/P31749 denotes Akt
T15008 154-157 http://www.uniprot.org/uniprot/P31749 denotes Akt
T15096 96-100 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T15079 207-210 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T15078 154-157 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T13694 6-11 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T13939 80-83 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T13922 73-78 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T13916 68-78 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T13901 224-235 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T13887 224-235 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T13957 80-83 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

sentences

Id Subject Object Predicate Lexical cue
T13710 0-236 Sentence denotes Under serum free conditions all zVAD.fmk-induced downstream events (cell death, JNK activation, TNFα production) were dependent on the over expressed Myr-Akt. This allowed us to examine the effects of other Akt mutations on necroptosis.
T198 0-158 Sentence denotes Under serum free conditions all zVAD.fmk-induced downstream events (cell death, JNK activation, TNFα production) were dependent on the over expressed Myr-Akt.
T199 159-236 Sentence denotes This allowed us to examine the effects of other Akt mutations on necroptosis.

simple1

Id Subject Object Predicate Lexical cue
T14045 150-157 Protein denotes Myr-Akt
T14044 96-100 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14972 140-149 Gene_expression denotes expressed
T14971 101-111 Gene_expression denotes production
T14941 150-157 Protein denotes Myr-Akt
T14940 96-100 Protein denotes TNFα
R9929 T14940 T14971 themeOf TNFα,production
R9930 T14941 T14972 themeOf Myr-Akt,expressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T15285 140-149 Gene_expression denotes expressed
T15284 101-111 Gene_expression denotes production
T15255 150-157 Protein denotes Myr-Akt
T15254 96-100 Protein denotes TNFα
R10024 T15254 T15284 themeOf TNFα,production
R10025 T15255 T15285 themeOf Myr-Akt,expressed

DLUT931

Id Subject Object Predicate Lexical cue
T15159 140-149 Gene_expression denotes expressed
T15158 101-111 Gene_expression denotes production
T15128 150-157 Protein denotes Myr-Akt
T15127 96-100 Protein denotes TNFα
R9966 T15127 T15158 themeOf TNFα,production
R9967 T15128 T15159 themeOf Myr-Akt,expressed

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15760 80-94 Positive_regulation denotes JNK activation
T15747 68-111 Gene_expression denotes cell death, JNK activation, TNFα production
T15701 207-210 Protein denotes Akt
T15648 150-157 Protein denotes Myr-Akt
T15620 80-83 Protein denotes JNK
T15618 68-100 Protein denotes cell death, JNK activation, TNFα
T15703 32-48 Entity denotes zVAD.fmk-induced
R10214 T15618 T15747 themeOf "cell death, JNK activation, TNFα","cell death, JNK activation, TNFα production"
R10215 T15620 T15760 themeOf JNK,JNK activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16248 235-236 . denotes .
T16247 224-235 NN denotes necroptosis
T16246 221-223 IN denotes on
T16245 211-220 NNS denotes mutations
T16244 207-210 NNP denotes Akt
T16243 201-206 JJ denotes other
T16242 198-200 IN denotes of
T16241 190-197 NNS denotes effects
T16240 186-189 DT denotes the
T16239 178-185 VB denotes examine
T16238 175-177 TO denotes to
T16237 172-174 PRP denotes us
T16236 164-171 VBD denotes allowed
T16235 159-163 DT denotes This
T16234 157-158 . denotes .
T16233 150-157 NNP denotes Myr-Akt
T16232 140-149 VBN denotes expressed
T16231 135-139 JJ denotes over
T16230 131-134 DT denotes the
T16229 128-130 IN denotes on
T16228 118-127 JJ denotes dependent
T16227 113-117 VBD denotes were
T16226 111-112 -RRB- denotes )
T16225 101-111 NN denotes production
T16224 96-100 JJ denotes TNFα
T16223 94-95 , denotes ,
T16222 84-94 NN denotes activation
T16221 80-83 NNP denotes JNK
T16220 78-79 , denotes ,
T16219 73-78 NN denotes death
T16218 68-72 NN denotes cell
T16217 67-68 -LRB- denotes (
T16216 60-66 NNS denotes events
T16215 49-59 JJ denotes downstream
T16214 32-48 JJ denotes zVAD.fmk-induced
T16213 28-31 DT denotes all
T16212 17-27 NNS denotes conditions
T16211 12-16 JJ denotes free
T16210 6-11 NN denotes serum
T16209 0-5 IN denotes Under
R10722 T16209 T16232 prep Under,expressed
R10727 T16210 T16212 nmod serum,conditions
R10730 T16211 T16212 amod free,conditions
R10735 T16212 T16209 pobj conditions,Under
R10738 T16213 T16216 det all,events
R10740 T16214 T16216 amod zVAD.fmk-induced,events
R10741 T16215 T16216 amod downstream,events
R10744 T16216 T16232 nsubj events,expressed
R10747 T16217 T16219 punct (,death
R10750 T16218 T16219 compound cell,death
R10754 T16219 T16216 dobj death,events
R10760 T16220 T16216 punct ",",events
R10764 T16221 T16222 compound JNK,activation
R10768 T16222 T16225 nmod activation,production
R10772 T16223 T16225 punct ",",production
R10776 T16224 T16225 compound TNFα,production
R10780 T16225 T16228 nsubjpass production,dependent
R10784 T16226 T16225 punct ),production
R10785 T16227 T16228 auxpass were,dependent
R10787 T16228 T16216 advcl dependent,events
R10789 T16229 T16228 prep on,dependent
R10791 T16230 T16231 det the,over
R10792 T16231 T16229 pobj over,on
R10794 T16232 T16232 ROOT expressed,expressed
R10796 T16233 T16232 dobj Myr-Akt,expressed
R10797 T16234 T16232 punct .,expressed
R10799 T16235 T16236 nsubj This,allowed
R10801 T16236 T16236 ROOT allowed,allowed
R10804 T16237 T16239 nsubj us,examine
R10807 T16238 T16239 aux to,examine
R10808 T16239 T16236 ccomp examine,allowed
R10810 T16240 T16241 det the,effects
R10813 T16241 T16239 dobj effects,examine
R10816 T16242 T16241 prep of,effects
R10819 T16243 T16245 amod other,mutations
R10822 T16244 T16245 compound Akt,mutations
R10826 T16245 T16242 pobj mutations,of
R10830 T16246 T16245 prep on,mutations
R10833 T16247 T16246 pobj necroptosis,on
R10838 T16248 T16236 punct .,allowed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T15391 84-94 Positive_regulation denotes activation
T15390 140-149 Gene_expression denotes expressed
T15389 140-149 Gene_expression denotes expressed
T15388 101-111 Gene_expression denotes production
T15387 84-94 Positive_regulation denotes activation
T15386 154-157 Protein denotes Akt
T15385 150-153 Protein denotes Myr
T15384 96-100 Protein denotes TNFα
T15383 80-83 Protein denotes JNK
R10094 T15383 T15387 themeOf JNK,activation
R10095 T15384 T15388 themeOf TNFα,production
R10096 T15385 T15389 themeOf Myr,expressed
R10097 T15386 T15390 themeOf Akt,expressed
R10098 T15388 T15391 themeOf production,activation

test3

Id Subject Object Predicate Lexical cue
T13651 150-157 Protein denotes Myr-Akt
T13650 140-149 Gene_expression denotes expressed
T13649 118-127 Regulation denotes dependent
T13648 101-111 Gene_expression denotes production
T13647 96-100 Protein denotes TNFα
T13579 150-157 Protein denotes Myr-Akt
T13578 96-100 Protein denotes TNFα
R8948 T13647 T13648 themeOf TNFα,production
R8949 T13648 T13649 themeOf production,dependent
R8950 T13650 T13649 themeOf expressed,dependent
R8951 T13651 T13650 themeOf Myr-Akt,expressed