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PMC:3585731 / 24387-25093 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T30651 507-516 Negative_regulation denotes knockdown
T30650 633-638 Protein denotes mTNFα
T30649 586-590 Protein denotes TNFα
T30648 461-465 Protein denotes TNFα
T30647 355-359 Protein denotes TNFα
T30646 303-306 Protein denotes 18S
T30645 267-272 Protein denotes mTNFα
T30644 187-191 Protein denotes bFGF
T30643 77-81 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T30859 698-705 VB denotes plotted
T30858 694-697 VB denotes was
T30857 683-693 NN denotes average±SD
T30856 681-682 -COMMA- denotes ,
T30855 675-681 NN denotes graphs
T30854 671-674 DT denotes all
T30853 668-670 IN denotes In
T30852 665-666 -RRB- denotes )
T30851 664-665 NN denotes F
T30850 663-664 -COMMA- denotes ,
T30849 662-663 NN denotes E
T30848 661-662 -LRB- denotes (
T30847 656-660 NN denotes blot
T30846 648-655 JJ denotes western
T30845 645-647 CC denotes or
T30844 643-644 -RRB- denotes )
T30843 642-643 NN denotes D
T30842 641-642 -COMMA- denotes ,
T30841 640-641 NN denotes C
T30840 639-640 -LRB- denotes (
T30839 633-638 NN denotes mTNFα
T30838 630-632 IN denotes of
T30837 621-629 NN denotes analysis
T30836 613-620 NN denotes qRT-PCR
T30835 610-612 IN denotes by
T30834 601-609 VB denotes followed
T30833 599-600 -COMMA- denotes ,
T30832 597-599 NN denotes hr
T30831 595-596 CD denotes 9
T30830 591-594 IN denotes for
T30829 586-590 NN denotes TNFα
T30828 583-585 CC denotes or
T30827 574-582 NN denotes zVAD.fmk
T30826 569-573 IN denotes with
T30825 558-568 VB denotes stimulated
T30824 553-557 VB denotes were
T30823 551-552 -RRB- denotes )
T30822 550-551 NN denotes F
T30821 549-550 -COMMA- denotes ,
T30820 548-549 NN denotes D
T30819 547-548 -LRB- denotes (
T30818 542-546 NN denotes mTOR
T30817 539-541 CC denotes or
T30816 537-538 -RRB- denotes )
T30815 536-537 NN denotes E
T30814 535-536 -COMMA- denotes ,
T30813 534-535 NN denotes C
T30812 533-534 -LRB- denotes (
T30811 524-532 NN denotes isoforms
T30810 520-523 NN denotes Akt
T30809 517-519 IN denotes of
T30808 507-516 NN denotes knockdown
T30807 501-506 NN denotes siRNA
T30735 135-140 NN denotes Cells
T30734 133-134 -RRB- denotes )
T30733 132-133 NN denotes A
T30732 131-132 -LRB- denotes (
T30731 118-129 NN denotes necroptosis
T30730 111-117 IN denotes during
T30729 100-110 NN denotes activation
T30728 96-99 NN denotes JNK
T30727 92-95 CC denotes and
T30726 82-91 NN denotes synthesis
T30725 77-81 NN denotes TNFα
T30724 67-76 JJ denotes autocrine
T30723 59-66 NN denotes control
T30722 52-58 NN denotes mTORC1
T30721 48-51 CC denotes and
T30720 44-47 NN denotes Akt
T30806 496-500 IN denotes with
T30805 490-495 NN denotes cells
T30804 485-489 NN denotes L929
T30803 483-484 -RRB- denotes )
T30802 480-483 NN denotes C-F
T30801 479-480 -LRB- denotes (
T30800 471-478 NN denotes levels.
T30799 466-470 NN denotes mRNA
T30798 461-465 NN denotes TNFα
T30797 458-460 IN denotes of
T30796 449-457 NN denotes analysis
T30795 441-448 NN denotes qRT-PCR
T30794 438-440 IN denotes by
T30793 429-437 VB denotes followed
T30792 424-428 NN denotes inh.
T30791 419-423 CD denotes VIII
T30790 414-417 NN denotes inh
T30789 410-413 NN denotes Akt
T30788 407-409 CC denotes or
T30787 405-406 -COMMA- denotes ,
T30786 404-405 -RRB- denotes )
T30785 400-404 NN denotes rapa
T30784 399-400 -LRB- denotes (
T30783 389-398 NN denotes rapamycin
T30782 387-388 -COMMA- denotes ,
T30781 382-387 NN denotes Nec-1
T30780 377-381 IN denotes with
T30779 369-376 VB denotes treated
T30778 363-368 NN denotes cells
T30777 360-362 IN denotes in
T30776 355-359 NN denotes TNFα
T30775 352-354 CC denotes or
T30774 343-351 NN denotes zVAD.fmk
T30773 340-342 IN denotes by
T30772 332-339 VB denotes induced
T30771 328-331 VB denotes was
T30770 316-327 NN denotes Necroptosis
T30769 314-315 -RRB- denotes )
T30768 313-314 NN denotes B
T30767 312-313 -LRB- denotes (
T30766 307-311 NN denotes RNA.
T30765 303-306 NN denotes 18S
T30764 297-302 NN denotes mouse
T30763 294-296 TO denotes to
T30762 283-293 VB denotes normalized
T30761 279-282 VB denotes was
T30760 274-278 NN denotes Data
T30759 267-272 NN denotes mTNFα
T30758 264-266 IN denotes of
T30757 255-263 NN denotes analysis
T30756 247-254 NN denotes qRT-PCR
T30755 244-246 IN denotes by
T30754 235-243 VB denotes followed
T30753 233-234 -COMMA- denotes ,
T30752 231-233 NN denotes hr
T30751 229-230 CD denotes 9
T30750 225-228 IN denotes for
T30749 216-224 NN denotes zVAD.fmk
T30748 208-215 IN denotes without
T30747 205-207 CC denotes or
T30746 200-204 IN denotes with
T30745 195-199 NN denotes PDGF
T30744 192-194 CC denotes or
T30743 187-191 NN denotes bFGF
T30742 182-186 IN denotes with
T30741 171-181 NN denotes conditions
T30740 166-170 JJ denotes free
T30739 160-165 NN denotes serum
T30738 154-159 IN denotes under
T30737 146-153 VB denotes treated
T30736 141-145 VB denotes were
R21211 T30720 T30721 arg1Of Akt,and
R21212 T30721 T30730 arg1Of and,during
R21213 T30726 T30722 arg1Of synthesis,mTORC1
R21214 T30726 T30723 arg1Of synthesis,control
R21215 T30726 T30724 arg1Of synthesis,autocrine
R21216 T30726 T30725 arg1Of synthesis,TNFα
R21217 T30726 T30727 arg1Of synthesis,and
R21218 T30727 T30721 arg2Of and,and
R21219 T30729 T30727 arg2Of activation,and
R21220 T30729 T30728 arg1Of activation,JNK
R21221 T30731 T30730 arg2Of necroptosis,during
R21222 T30733 T30732 arg2Of A,(
R21223 T30734 T30732 arg3Of ),(
R21224 T30735 T30732 arg1Of Cells,(
R21225 T30735 T30736 arg1Of Cells,were
R21226 T30735 T30737 arg2Of Cells,treated
R21227 T30737 T30736 arg2Of treated,were
R21228 T30737 T30738 arg1Of treated,under
R21229 T30737 T30753 arg1Of treated,","
R21230 T30737 T30754 modOf treated,followed
R21231 T30741 T30738 arg2Of conditions,under
R21232 T30741 T30739 arg1Of conditions,serum
R21233 T30741 T30740 arg1Of conditions,free
R21234 T30741 T30742 arg1Of conditions,with
R21235 T30743 T30744 arg1Of bFGF,or
R21236 T30744 T30742 arg2Of or,with
R21237 T30744 T30746 arg1Of or,with
R21238 T30744 T30748 arg1Of or,without
R21239 T30745 T30744 arg2Of PDGF,or
R21240 T30746 T30747 arg1Of with,or
R21241 T30748 T30747 arg2Of without,or
R21242 T30749 T30746 arg2Of zVAD.fmk,with
R21243 T30749 T30748 arg2Of zVAD.fmk,without
R21244 T30749 T30750 arg1Of zVAD.fmk,for
R21245 T30752 T30750 arg2Of hr,for
R21246 T30752 T30751 arg1Of hr,9
R21247 T30757 T30754 arg1Of analysis,followed
R21248 T30757 T30755 arg2Of analysis,by
R21249 T30757 T30756 arg1Of analysis,qRT-PCR
R21250 T30757 T30758 arg1Of analysis,of
R21251 T30759 T30758 arg2Of mTNFα,of
R21252 T30760 T30761 arg1Of Data,was
R21253 T30760 T30762 arg2Of Data,normalized
R21254 T30762 T30761 arg2Of normalized,was
R21255 T30762 T30763 arg1Of normalized,to
R21256 T30762 T30780 arg1Of normalized,with
R21257 T30766 T30763 arg2Of RNA.,to
R21258 T30766 T30764 arg1Of RNA.,mouse
R21259 T30766 T30765 arg1Of RNA.,18S
R21260 T30766 T30767 arg1Of RNA.,(
R21261 T30766 T30779 arg2Of RNA.,treated
R21262 T30768 T30767 arg2Of B,(
R21263 T30769 T30767 arg3Of ),(
R21264 T30770 T30771 arg1Of Necroptosis,was
R21265 T30770 T30772 arg2Of Necroptosis,induced
R21266 T30772 T30771 arg2Of induced,was
R21267 T30774 T30775 arg1Of zVAD.fmk,or
R21268 T30775 T30772 arg1Of or,induced
R21269 T30775 T30773 arg2Of or,by
R21270 T30775 T30777 arg1Of or,in
R21271 T30776 T30775 arg2Of TNFα,or
R21272 T30778 T30777 arg2Of cells,in
R21273 T30779 T30771 modOf treated,was
R21274 T30781 T30782 arg1Of Nec-1,","
R21275 T30782 T30788 arg1Of ",",or
R21276 T30783 T30782 arg2Of rapamycin,","
R21277 T30783 T30784 arg1Of rapamycin,(
R21278 T30785 T30784 arg2Of rapa,(
R21279 T30786 T30784 arg3Of ),(
R21280 T30788 T30780 arg2Of or,with
R21281 T30788 T30787 arg1Of or,","
R21282 T30790 T30788 arg2Of inh,or
R21283 T30790 T30789 arg1Of inh,Akt
R21284 T30792 T30791 arg1Of inh.,VIII
R21285 T30792 T30793 arg2Of inh.,followed
R21286 T30792 T30824 arg1Of inh.,were
R21287 T30792 T30825 arg2Of inh.,stimulated
R21288 T30796 T30793 arg1Of analysis,followed
R21289 T30796 T30794 arg2Of analysis,by
R21290 T30796 T30795 arg1Of analysis,qRT-PCR
R21291 T30796 T30797 arg1Of analysis,of
R21292 T30802 T30801 arg2Of C-F,(
R21293 T30803 T30801 arg3Of ),(
R21294 T30805 T30797 arg2Of cells,of
R21295 T30805 T30798 arg1Of cells,TNFα
R21296 T30805 T30799 arg1Of cells,mRNA
R21297 T30805 T30800 arg1Of cells,levels.
R21298 T30805 T30801 arg1Of cells,(
R21299 T30805 T30804 arg1Of cells,L929
R21300 T30805 T30806 arg1Of cells,with
R21301 T30808 T30806 arg2Of knockdown,with
R21302 T30808 T30807 arg1Of knockdown,siRNA
R21303 T30808 T30809 arg1Of knockdown,of
R21304 T30811 T30810 arg1Of isoforms,Akt
R21305 T30811 T30812 arg1Of isoforms,(
R21306 T30811 T30817 arg1Of isoforms,or
R21307 T30813 T30812 arg2Of C,(
R21308 T30813 T30814 arg1Of C,","
R21309 T30815 T30814 arg2Of E,","
R21310 T30816 T30812 arg3Of ),(
R21311 T30817 T30809 arg2Of or,of
R21312 T30818 T30817 arg2Of mTOR,or
R21313 T30818 T30819 arg1Of mTOR,(
R21314 T30820 T30819 arg2Of D,(
R21315 T30820 T30821 arg1Of D,","
R21316 T30822 T30821 arg2Of F,","
R21317 T30823 T30819 arg3Of ),(
R21318 T30825 T30824 arg2Of stimulated,were
R21319 T30825 T30826 arg1Of stimulated,with
R21320 T30825 T30830 arg1Of stimulated,for
R21321 T30825 T30833 arg1Of stimulated,","
R21322 T30825 T30834 modOf stimulated,followed
R21323 T30827 T30828 arg1Of zVAD.fmk,or
R21324 T30828 T30826 arg2Of or,with
R21325 T30829 T30828 arg2Of TNFα,or
R21326 T30832 T30830 arg2Of hr,for
R21327 T30832 T30831 arg1Of hr,9
R21328 T30837 T30834 arg1Of analysis,followed
R21329 T30837 T30835 arg2Of analysis,by
R21330 T30837 T30836 arg1Of analysis,qRT-PCR
R21331 T30837 T30838 arg1Of analysis,of
R21332 T30839 T30840 arg1Of mTNFα,(
R21333 T30839 T30845 arg1Of mTNFα,or
R21334 T30841 T30840 arg2Of C,(
R21335 T30841 T30842 arg1Of C,","
R21336 T30843 T30842 arg2Of D,","
R21337 T30844 T30840 arg3Of ),(
R21338 T30845 T30838 arg2Of or,of
R21339 T30845 T30848 arg1Of or,(
R21340 T30847 T30845 arg2Of blot,or
R21341 T30847 T30846 arg1Of blot,western
R21342 T30849 T30848 arg2Of E,(
R21343 T30849 T30850 arg1Of E,","
R21344 T30851 T30850 arg2Of F,","
R21345 T30852 T30848 arg3Of ),(
R21346 T30855 T30853 arg2Of graphs,In
R21347 T30855 T30854 arg1Of graphs,all
R21348 T30857 T30858 arg1Of average±SD,was
R21349 T30857 T30859 arg2Of average±SD,plotted
R21350 T30859 T30853 arg1Of plotted,In
R21351 T30859 T30856 arg1Of plotted,","
R21352 T30859 T30858 arg2Of plotted,was

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T30689 355-359 Protein denotes TNFα
T30688 303-306 Protein denotes 18S
T30687 267-272 Protein denotes mTNFα
T30686 187-191 Protein denotes bFGF
T30685 77-81 Protein denotes TNFα
T30692 633-638 Protein denotes mTNFα
T30691 586-590 Protein denotes TNFα
T30690 461-465 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T30885 542-546 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T30884 187-191 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T30883 586-590 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T30882 461-465 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T30881 355-359 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T30880 77-81 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T30879 520-523 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T30878 410-413 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T30877 44-47 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T30876 520-523 http://www.uniprot.org/uniprot/P31751 denotes Akt
T30875 410-413 http://www.uniprot.org/uniprot/P31751 denotes Akt
T30874 44-47 http://www.uniprot.org/uniprot/P31751 denotes Akt
T30873 520-523 http://www.uniprot.org/uniprot/P31749 denotes Akt
T30872 410-413 http://www.uniprot.org/uniprot/P31749 denotes Akt
T30871 44-47 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T30669 160-165 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T30698 316-327 http://purl.obolibrary.org/obo/GO_0097528 denotes Necroptosis
T30697 118-129 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T30696 316-327 http://purl.obolibrary.org/obo/GO_0070266 denotes Necroptosis
T30695 118-129 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T30694 96-99 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T30693 82-91 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

GO-MF

Id Subject Object Predicate Lexical cue
T30700 195-199 http://purl.obolibrary.org/obo/GO_0005161 denotes PDGF
T30699 96-99 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T30703 490-495 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T30702 363-368 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T30701 52-58 http://purl.obolibrary.org/obo/GO_0031931 denotes mTORC1

sentences

Id Subject Object Predicate Lexical cue
T30674 668-706 Sentence denotes In all graphs, average±SD was plotted.
T30673 419-667 Sentence denotes VIII inh. followed by qRT-PCR analysis of TNFα mRNA levels. (C-F) L929 cells with siRNA knockdown of Akt isoforms (C,E) or mTOR (D,F) were stimulated with zVAD.fmk or TNFα for 9 hr, followed by qRT-PCR analysis of mTNFα (C,D) or western blot (E,F).
T30672 274-418 Sentence denotes Data was normalized to mouse 18S RNA. (B) Necroptosis was induced by zVAD.fmk or TNFα in cells treated with Nec-1, rapamycin (rapa), or Akt inh.
T30671 131-273 Sentence denotes (A) Cells were treated under serum free conditions with bFGF or PDGF with or without zVAD.fmk for 9 hr, followed by qRT-PCR analysis of mTNFα.
T30670 44-130 Sentence denotes Akt and mTORC1 control autocrine TNFα synthesis and JNK activation during necroptosis.
T156 0-130 Sentence denotes 10.1371/journal.pone.0056576.g006 Figure 6 Akt and mTORC1 control autocrine TNFα synthesis and JNK activation during necroptosis.
T157 131-273 Sentence denotes (A) Cells were treated under serum free conditions with bFGF or PDGF with or without zVAD.fmk for 9 hr, followed by qRT-PCR analysis of mTNFα.
T158 274-418 Sentence denotes Data was normalized to mouse 18S RNA. (B) Necroptosis was induced by zVAD.fmk or TNFα in cells treated with Nec-1, rapamycin (rapa), or Akt inh.
T159 419-667 Sentence denotes VIII inh. followed by qRT-PCR analysis of TNFα mRNA levels. (C-F) L929 cells with siRNA knockdown of Akt isoforms (C,E) or mTOR (D,F) were stimulated with zVAD.fmk or TNFα for 9 hr, followed by qRT-PCR analysis of mTNFα (C,D) or western blot (E,F).
T160 668-706 Sentence denotes In all graphs, average±SD was plotted.

simple1

Id Subject Object Predicate Lexical cue
T30719 633-638 Protein denotes mTNFα
T30718 586-590 Protein denotes TNFα
T30717 461-465 Protein denotes TNFα
T30716 355-359 Protein denotes TNFα
T30715 303-306 Protein denotes 18S
T30714 267-272 Protein denotes mTNFα
T30713 187-191 Protein denotes bFGF
T30712 77-81 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T30870 471-477 Transcription denotes levels
T30869 59-66 Regulation denotes control
T30868 82-91 Gene_expression denotes synthesis
T30867 633-638 Protein denotes mTNFα
T30866 586-590 Protein denotes TNFα
T30865 461-465 Protein denotes TNFα
T30864 355-359 Protein denotes TNFα
T30863 303-306 Protein denotes 18S
T30862 267-272 Protein denotes mTNFα
T30861 187-191 Protein denotes bFGF
T30860 77-81 Protein denotes TNFα
R21353 T30860 T30868 themeOf TNFα,synthesis
R21354 T30865 T30870 themeOf TNFα,levels
R21355 T30868 T30869 themeOf synthesis,control

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T30915 332-339 Positive_regulation denotes induced
T30914 82-91 Gene_expression denotes synthesis
T30913 67-76 Positive_regulation denotes autocrine
T30912 633-638 Protein denotes mTNFα
T30911 586-590 Protein denotes TNFα
T30910 461-465 Protein denotes TNFα
T30909 355-359 Protein denotes TNFα
T30908 303-306 Protein denotes 18S
T30907 267-272 Protein denotes mTNFα
T30906 187-191 Protein denotes bFGF
T30905 77-81 Protein denotes TNFα
R21359 T30905 T30914 themeOf TNFα,synthesis
R21360 T30909 T30915 themeOf TNFα,induced
R21361 T30914 T30913 themeOf synthesis,autocrine

DLUT931

Id Subject Object Predicate Lexical cue
T30896 471-477 Transcription denotes levels
T30895 67-76 Positive_regulation denotes autocrine
T30894 82-91 Gene_expression denotes synthesis
T30893 633-638 Protein denotes mTNFα
T30892 586-590 Protein denotes TNFα
T30891 461-465 Protein denotes TNFα
T30890 355-359 Protein denotes TNFα
T30889 303-306 Protein denotes 18S
T30888 267-272 Protein denotes mTNFα
T30887 187-191 Protein denotes bFGF
T30886 77-81 Protein denotes TNFα
R21356 T30886 T30894 themeOf TNFα,synthesis
R21357 T30891 T30896 themeOf TNFα,levels
R21358 T30894 T30895 themeOf synthesis,autocrine

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T31152 96-129 Positive_regulation denotes JNK activation during necroptosis
T31151 520-523 Protein denotes Akt
T31150 135-140 Entity denotes Cells
T31149 419-423 Protein denotes VIII
T31148 216-224 Entity denotes zVAD.fmk
T31147 294-310 Protein denotes to mouse 18S RNA
T31146 574-582 Entity denotes zVAD.fmk
T31145 410-417 Entity denotes Akt inh
T31144 251-254 Protein denotes PCR
T31143 67-91 Protein denotes autocrine TNFα synthesis
T31142 264-272 Protein denotes of mTNFα
T31141 542-550 Protein denotes mTOR (D,
T31140 187-191 Protein denotes bFGF
T31139 542-551 Entity denotes mTOR (D,F
T31138 503-506 Protein denotes RNA
T31137 382-406 Protein denotes Nec-1, rapamycin (rapa),
T31136 419-427 Entity denotes VIII inh
T31135 195-199 Entity denotes PDGF
T31134 389-405 Entity denotes rapamycin (rapa)
T31133 458-477 Protein denotes of TNFα mRNA levels
T31132 501-503 Entity denotes si
T31131 355-359 Protein denotes TNFα
T31130 617-620 Protein denotes PCR
T31129 44-47 Protein denotes Akt
T31128 363-406 Entity denotes cells treated with Nec-1, rapamycin (rapa),
T31127 400-404 Protein denotes rapa
T31126 586-590 Protein denotes TNFα
T31125 343-351 Entity denotes zVAD.fmk
T31124 630-638 Protein denotes of mTNFα
T31123 303-306 Protein denotes 18S
T31122 410-413 Protein denotes Akt
T31121 96-99 Protein denotes JNK
T31120 52-58 Entity denotes mTORC1
T31119 441-448 Protein denotes qRT-PCR
T31118 461-465 Protein denotes TNFα
R21540 T31121 T31152 themeOf JNK,JNK activation during necroptosis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T31091 705-706 . denotes .
T31090 698-705 VBN denotes plotted
T31089 694-697 VBD denotes was
T31088 691-693 NNP denotes SD
T31087 690-691 NN denotes ±
T31086 683-690 JJ denotes average
T31085 681-682 , denotes ,
T31084 675-681 NNS denotes graphs
T31083 671-674 DT denotes all
T31082 668-670 IN denotes In
T31081 666-667 . denotes .
T31080 665-666 -RRB- denotes )
T31079 664-665 NN denotes F
T31078 663-664 , denotes ,
T31077 662-663 NNP denotes E
T31076 661-662 -LRB- denotes (
T31075 656-660 NN denotes blot
T31074 648-655 JJ denotes western
T31073 645-647 CC denotes or
T31072 643-644 -RRB- denotes )
T31071 642-643 NNP denotes D
T31070 641-642 , denotes ,
T31069 640-641 NNP denotes C
T31068 639-640 -LRB- denotes (
T31067 633-638 NNP denotes mTNFα
T31066 630-632 IN denotes of
T31065 621-629 NN denotes analysis
T31064 613-620 JJ denotes qRT-PCR
T31022 441-448 JJ denotes qRT-PCR
T31021 438-440 IN denotes by
T31020 429-437 VBN denotes followed
T31019 427-428 . denotes .
T31018 424-427 NN denotes inh
T31017 419-423 NNP denotes VIII
T31016 417-418 . denotes .
T31015 414-417 NN denotes inh
T31014 410-413 NNP denotes Akt
T31013 407-409 CC denotes or
T31012 405-406 , denotes ,
T31011 404-405 -RRB- denotes )
T31010 400-404 NN denotes rapa
T31009 399-400 -LRB- denotes (
T31008 389-398 NN denotes rapamycin
T31007 387-388 , denotes ,
T31006 382-387 NN denotes Nec-1
T31005 377-381 IN denotes with
T31004 369-376 VBN denotes treated
T31003 363-368 NNS denotes cells
T31002 360-362 IN denotes in
T31001 355-359 NNP denotes TNFα
T31000 352-354 CC denotes or
T30999 343-351 NNP denotes zVAD.fmk
T30998 340-342 IN denotes by
T30997 332-339 VBN denotes induced
T30996 328-331 VBD denotes was
T30995 316-327 NNP denotes Necroptosis
T30994 314-315 -RRB- denotes )
T30993 313-314 NNP denotes B
T30992 312-313 -LRB- denotes (
T30991 310-311 . denotes .
T30990 307-310 NNP denotes RNA
T30989 303-306 CD denotes 18S
T30988 297-302 NN denotes mouse
T30987 294-296 TO denotes to
T30986 283-293 VBN denotes normalized
T30985 279-282 VBD denotes was
T30984 274-278 NNP denotes Data
T30983 272-273 . denotes .
T30982 267-272 NNP denotes mTNFα
T30981 264-266 IN denotes of
T30980 255-263 NN denotes analysis
T30979 247-254 JJ denotes qRT-PCR
T30978 244-246 IN denotes by
T30977 235-243 VBN denotes followed
T30976 233-234 , denotes ,
T30975 231-233 NN denotes hr
T30974 229-230 CD denotes 9
T30973 225-228 IN denotes for
T30972 216-224 NNP denotes zVAD.fmk
T30971 208-215 IN denotes without
T30970 205-207 CC denotes or
T30969 200-204 IN denotes with
T30968 195-199 NNP denotes PDGF
T30967 192-194 CC denotes or
T30966 187-191 NNP denotes bFGF
T30965 182-186 IN denotes with
T30964 171-181 NNS denotes conditions
T30963 166-170 JJ denotes free
T30962 160-165 NN denotes serum
T30961 154-159 IN denotes under
T30960 146-153 VBN denotes treated
T30959 141-145 VBD denotes were
T30958 135-140 NNPS denotes Cells
T30957 133-134 -RRB- denotes )
T30956 132-133 NNP denotes A
T30955 131-132 -LRB- denotes (
T30954 129-130 . denotes .
T30953 118-129 NN denotes necroptosis
T30952 111-117 IN denotes during
T30951 100-110 NN denotes activation
T30950 96-99 NNP denotes JNK
T30949 92-95 CC denotes and
T30948 82-91 NN denotes synthesis
T30947 77-81 NNP denotes TNFα
T30946 67-76 NN denotes autocrine
T30945 59-66 NN denotes control
T30944 52-58 NNP denotes mTORC1
T30943 48-51 CC denotes and
T30942 44-47 NNP denotes Akt
T31063 610-612 IN denotes by
T31062 601-609 VBN denotes followed
T31061 599-600 , denotes ,
T31060 597-599 NN denotes hr
T31059 595-596 CD denotes 9
T31058 591-594 IN denotes for
T31057 586-590 NNP denotes TNFα
T31056 583-585 CC denotes or
T31055 574-582 NNP denotes zVAD.fmk
T31054 569-573 IN denotes with
T31053 558-568 VBN denotes stimulated
T31052 553-557 VBD denotes were
T31051 551-552 -RRB- denotes )
T31050 550-551 NN denotes F
T31049 549-550 , denotes ,
T31048 548-549 NNP denotes D
T31047 547-548 -LRB- denotes (
T31046 542-546 NNP denotes mTOR
T31045 539-541 CC denotes or
T31044 537-538 -RRB- denotes )
T31043 536-537 NNP denotes E
T31042 535-536 , denotes ,
T31041 534-535 NNP denotes C
T31040 533-534 -LRB- denotes (
T31039 524-532 VBZ denotes isoforms
T31038 520-523 NNP denotes Akt
T31037 517-519 IN denotes of
T31036 507-516 NN denotes knockdown
T31035 501-506 NNP denotes siRNA
T31034 496-500 IN denotes with
T31033 490-495 NNS denotes cells
T31032 485-489 CD denotes L929
T31031 483-484 -RRB- denotes )
T31030 480-483 NN denotes C-F
T31029 479-480 -LRB- denotes (
T31028 477-478 . denotes .
T31027 471-477 NNS denotes levels
T31026 466-470 NNP denotes mRNA
T31025 461-465 NNP denotes TNFα
T31024 458-460 IN denotes of
T31023 449-457 NN denotes analysis
R21376 T30942 T30942 ROOT Akt,Akt
R21377 T30943 T30942 cc and,Akt
R21378 T30944 T30942 conj mTORC1,Akt
R21379 T30945 T30948 nmod control,synthesis
R21380 T30946 T30948 compound autocrine,synthesis
R21381 T30947 T30948 compound TNFα,synthesis
R21382 T30948 T30942 appos synthesis,Akt
R21383 T30949 T30948 cc and,synthesis
R21384 T30950 T30951 compound JNK,activation
R21385 T30951 T30948 conj activation,synthesis
R21386 T30952 T30951 prep during,activation
R21387 T30953 T30952 pobj necroptosis,during
R21388 T30954 T30942 punct .,Akt
R21389 T30955 T30960 punct (,treated
R21390 T30956 T30958 det A,Cells
R21391 T30957 T30958 punct ),Cells
R21392 T30958 T30960 nsubjpass Cells,treated
R21393 T30959 T30960 auxpass were,treated
R21394 T30960 T30960 ROOT treated,treated
R21395 T30961 T30960 prep under,treated
R21396 T30962 T30963 npadvmod serum,free
R21397 T30963 T30964 amod free,conditions
R21398 T30964 T30961 pobj conditions,under
R21399 T30965 T30960 prep with,treated
R21400 T30966 T30965 pobj bFGF,with
R21401 T30967 T30966 cc or,bFGF
R21402 T30968 T30966 conj PDGF,bFGF
R21403 T30969 T30965 conj with,with
R21404 T30970 T30969 cc or,with
R21405 T30971 T30969 conj without,with
R21406 T30972 T30971 pobj zVAD.fmk,without
R21407 T30973 T30960 prep for,treated
R21408 T30974 T30975 nummod 9,hr
R21409 T30975 T30973 pobj hr,for
R21410 T30976 T30960 punct ",",treated
R21411 T30977 T30960 advcl followed,treated
R21412 T30978 T30977 agent by,followed
R21413 T30979 T30980 amod qRT-PCR,analysis
R21414 T30980 T30978 pobj analysis,by
R21415 T30981 T30980 prep of,analysis
R21416 T30982 T30981 pobj mTNFα,of
R21417 T30983 T30960 punct .,treated
R21418 T30984 T30985 nsubj Data,was
R21419 T30985 T30985 ROOT was,was
R21420 T30986 T30985 acomp normalized,was
R21421 T30987 T30988 aux to,mouse
R21422 T30988 T30986 xcomp mouse,normalized
R21423 T30989 T30990 nummod 18S,RNA
R21424 T30990 T30988 dobj RNA,mouse
R21425 T30991 T30985 punct .,was
R21426 T30992 T30995 punct (,Necroptosis
R21427 T30993 T30995 nmod B,Necroptosis
R21428 T30994 T30995 punct ),Necroptosis
R21429 T30995 T30997 nsubjpass Necroptosis,induced
R21430 T30996 T30997 auxpass was,induced
R21431 T30997 T30997 ROOT induced,induced
R21432 T30998 T30997 agent by,induced
R21433 T30999 T30998 pobj zVAD.fmk,by
R21434 T31000 T30999 cc or,zVAD.fmk
R21435 T31001 T30999 conj TNFα,zVAD.fmk
R21436 T31002 T30997 prep in,induced
R21437 T31003 T31002 pobj cells,in
R21438 T31004 T31003 acl treated,cells
R21439 T31005 T31004 prep with,treated
R21440 T31006 T31005 pobj Nec-1,with
R21441 T31007 T30997 punct ",",induced
R21442 T31008 T30997 npadvmod rapamycin,induced
R21443 T31009 T31010 punct (,rapa
R21444 T31010 T31008 appos rapa,rapamycin
R21445 T31011 T31010 punct ),rapa
R21446 T31012 T31010 punct ",",rapa
R21447 T31013 T31008 cc or,rapamycin
R21448 T31014 T31015 compound Akt,inh
R21458 T31024 T31023 prep of,analysis
R21459 T31025 T31026 compound TNFα,mRNA
R21460 T31026 T31027 compound mRNA,levels
R21461 T31027 T31024 pobj levels,of
R21462 T31028 T31020 punct .,followed
R21463 T31029 T31030 punct (,C-F
R21464 T31030 T31030 ROOT C-F,C-F
R21465 T31031 T31030 punct ),C-F
R21466 T31032 T31033 nummod L929,cells
R21467 T31033 T31053 nsubjpass cells,stimulated
R21468 T31034 T31033 prep with,cells
R21469 T31035 T31036 compound siRNA,knockdown
R21470 T31036 T31034 pobj knockdown,with
R21471 T31037 T31036 prep of,knockdown
R21472 T31038 T31039 compound Akt,isoforms
R21473 T31039 T31037 pobj isoforms,of
R21474 T31040 T31041 punct (,C
R21475 T31041 T31053 nsubjpass C,stimulated
R21476 T31042 T31041 punct ",",C
R21477 T31043 T31041 appos E,C
R21478 T31044 T31041 punct ),C
R21479 T31045 T31041 cc or,C
R21480 T31046 T31041 conj mTOR,C
R21481 T31047 T31048 punct (,D
R21482 T31048 T31046 appos D,mTOR
R21483 T31049 T31046 punct ",",mTOR
R21484 T31050 T31046 appos F,mTOR
R21485 T31051 T31046 punct ),mTOR
R21486 T31052 T31053 auxpass were,stimulated
R21487 T31053 T31053 ROOT stimulated,stimulated
R21488 T31054 T31053 prep with,stimulated
R21489 T31055 T31054 pobj zVAD.fmk,with
R21490 T31056 T31055 cc or,zVAD.fmk
R21491 T31057 T31055 conj TNFα,zVAD.fmk
R21492 T31058 T31053 prep for,stimulated
R21493 T31059 T31060 nummod 9,hr
R21494 T31060 T31058 pobj hr,for
R21495 T31061 T31053 punct ",",stimulated
R21496 T31062 T31053 advcl followed,stimulated
R21497 T31063 T31062 agent by,followed
R21498 T31064 T31065 amod qRT-PCR,analysis
R21499 T31065 T31063 pobj analysis,by
R21500 T31066 T31065 prep of,analysis
R21501 T31067 T31075 nmod mTNFα,blot
R21502 T31068 T31069 punct (,C
R21503 T31069 T31067 appos C,mTNFα
R21504 T31070 T31069 punct ",",C
R21505 T31071 T31069 appos D,C
R21506 T31072 T31069 punct ),C
R21507 T31073 T31069 cc or,C
R21508 T31074 T31075 amod western,blot
R21509 T31075 T31066 pobj blot,of
R21510 T31076 T31077 punct (,E
R21511 T31077 T31079 dep E,F
R21512 T31078 T31079 punct ",",F
R21513 T31079 T31065 conj F,analysis
R21514 T31080 T31079 punct ),F
R21515 T31081 T31053 punct .,stimulated
R21516 T31082 T31090 prep In,plotted
R21517 T31083 T31084 det all,graphs
R21518 T31084 T31082 pobj graphs,In
R21519 T31085 T31090 punct ",",plotted
R21520 T31086 T31087 amod average,±
R21521 T31087 T31088 compound ±,SD
R21522 T31088 T31090 nsubjpass SD,plotted
R21523 T31089 T31090 auxpass was,plotted
R21524 T31090 T31090 ROOT plotted,plotted
R21525 T31091 T31090 punct .,plotted
R21449 T31015 T31008 conj inh,rapamycin
R21450 T31016 T30997 punct .,induced
R21451 T31017 T31018 compound VIII,inh
R21452 T31018 T31018 ROOT inh,inh
R21453 T31019 T31018 punct .,inh
R21454 T31020 T31020 ROOT followed,followed
R21455 T31021 T31020 agent by,followed
R21456 T31022 T31023 amod qRT-PCR,analysis
R21457 T31023 T31021 pobj analysis,by

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T30925 59-66 Regulation denotes control
T30924 59-66 Regulation denotes control
T30923 59-66 Regulation denotes control
T30922 100-110 Positive_regulation denotes activation
T30921 100-110 Positive_regulation denotes activation
T30920 82-91 Gene_expression denotes synthesis
T30919 96-99 Protein denotes JNK
T30918 77-81 Protein denotes TNFα
T30917 52-58 Protein denotes mTORC1
T30916 44-47 Protein denotes Akt
T30941 507-516 Negative_regulation denotes knockdown
T30940 586-590 Protein denotes TNFα
T30939 574-582 Protein denotes zVAD.fmk
T30938 520-523 Protein denotes Akt
T30937 461-470 Protein denotes TNFα mRNA
T30936 424-427 Protein denotes inh
T30935 410-417 Protein denotes Akt inh
T30934 382-387 Protein denotes Nec-1
T30933 355-359 Protein denotes TNFα
T30932 343-351 Protein denotes zVAD.fmk
T30931 297-310 Protein denotes mouse 18S RNA
T30930 267-272 Protein denotes mTNFα
T30929 195-199 Protein denotes PDGF
T30928 187-191 Protein denotes bFGF
T30927 59-66 Regulation denotes control
T30926 59-66 Regulation denotes control
R21362 T30916 T30923 causeOf Akt,control
R21363 T30916 T30924 causeOf Akt,control
R21364 T30917 T30925 causeOf mTORC1,control
R21365 T30917 T30926 causeOf mTORC1,control
R21366 T30917 T30927 causeOf mTORC1,control
R21367 T30918 T30920 themeOf TNFα,synthesis
R21368 T30919 T30921 themeOf JNK,activation
R21369 T30920 T30922 themeOf synthesis,activation
R21370 T30920 T30925 themeOf synthesis,control
R21371 T30921 T30923 themeOf activation,control
R21372 T30921 T30926 themeOf activation,control
R21373 T30922 T30924 themeOf activation,control
R21374 T30922 T30927 themeOf activation,control
R21375 T30938 T30941 themeOf Akt,knockdown

test3

Id Subject Object Predicate Lexical cue
T30668 633-638 Protein denotes mTNFα
T30667 586-590 Protein denotes TNFα
T30666 507-516 Negative_regulation denotes knockdown
T30665 461-465 Protein denotes TNFα
T30664 355-359 Protein denotes TNFα
T30663 303-306 Protein denotes 18S
T30662 267-272 Protein denotes mTNFα
T30661 187-191 Protein denotes bFGF
T30660 77-81 Protein denotes TNFα
T30659 633-638 Protein denotes mTNFα
T30658 586-590 Protein denotes TNFα
T30657 461-465 Protein denotes TNFα
T30656 355-359 Protein denotes TNFα
T30655 303-306 Protein denotes 18S
T30654 267-272 Protein denotes mTNFα
T30653 187-191 Protein denotes bFGF
T30652 77-81 Protein denotes TNFα
R21208 T30667 T30666 themeOf TNFα,knockdown