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PMC:3585731 / 21615-21780 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T30220 79-88 Negative_regulation denotes knockdown
T30218 149-153 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T30383 142-145 NN denotes fmk
T30382 140-142 CD denotes D.
T30381 137-140 IN denotes zVA
T30380 132-136 NN denotes with
T30379 130-132 CC denotes d
T30378 122-130 NN denotes r treate
T30377 118-122 IN denotes ot o
T30376 111-118 VB denotes tern bl
T30375 109-111 CC denotes es
T30374 105-109 NN denotes or w
T30373 98-105 JJ denotes ested f
T30372 95-98 IN denotes arv
T30371 86-95 VB denotes wn were h
T30370 82-86 VB denotes ckdo
T30369 73-82 NN denotes siRNA kno
T30368 68-73 NN denotes mTOR
T30367 63-67 NN denotes with
T30366 59-63 IN denotes lls
T30365 54-59 NN denotes 29 ce
T30364 50-54 NN denotes ) L9
T30363 49-50 -RRB- denotes D
T30362 48-49 NN denotes (
T30361 46-47 -LRB- denotes .
T30360 45-46 -RRB- denotes )
T30359 39-45 NN denotes PI-103
T30358 35-38 CC denotes and
T30357 27-34 NN denotes Torin-1
T30356 25-26 -COMMA- denotes ,
T30355 16-25 NN denotes rapamycin
T30354 15-16 -LRB- denotes (
T30353 10-14 NN denotes mTOR
T30352 6-9 CC denotes and
T30351 4-5 -RRB- denotes )
T30350 0-4 CD denotes VIII
R21007 T30350 T30351 arg1Of VIII,)
R21008 T30350 T30352 arg1Of VIII,and
R21009 T30352 T30370 modOf and,ckdo
R21010 T30353 T30352 arg2Of mTOR,and
R21011 T30353 T30354 arg1Of mTOR,(
R21012 T30355 T30356 arg1Of rapamycin,","
R21013 T30356 T30358 arg1Of ",",and
R21014 T30357 T30356 arg2Of Torin-1,","
R21015 T30358 T30354 arg2Of and,(
R21016 T30359 T30358 arg2Of PI-103,and
R21017 T30360 T30354 arg3Of ),(
R21018 T30362 T30361 arg2Of (,.
R21019 T30363 T30361 arg3Of D,.
R21020 T30365 T30361 arg1Of 29 ce,.
R21021 T30365 T30364 arg1Of 29 ce,) L9
R21022 T30365 T30366 arg1Of 29 ce,lls
R21023 T30365 T30370 arg1Of 29 ce,ckdo
R21024 T30365 T30371 arg2Of 29 ce,wn were h
R21025 T30365 T30376 arg2Of 29 ce,tern bl
R21026 T30369 T30366 arg2Of siRNA kno,lls
R21027 T30369 T30367 arg1Of siRNA kno,with
R21028 T30369 T30368 arg1Of siRNA kno,mTOR
R21029 T30371 T30372 arg1Of wn were h,arv
R21030 T30371 T30375 arg1Of wn were h,es
R21031 T30374 T30372 arg2Of or w,arv
R21032 T30374 T30373 arg1Of or w,ested f
R21033 T30375 T30370 arg2Of es,ckdo
R21034 T30376 T30375 arg2Of tern bl,es
R21035 T30376 T30377 arg1Of tern bl,ot o
R21036 T30376 T30381 arg1Of tern bl,zVA
R21037 T30378 T30379 arg1Of r treate,d
R21038 T30379 T30377 arg2Of d ,ot o
R21039 T30380 T30379 arg2Of with,d
R21040 T30383 T30381 arg2Of fmk,zVA
R21041 T30383 T30382 arg1Of fmk,D.

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T30248 149-153 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T30559 68-72 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T30558 10-14 http://www.uniprot.org/uniprot/P42345 denotes mTOR
T30549 149-153 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-CC

Id Subject Object Predicate Lexical cue
T30258 57-62 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T30236 0-165 Sentence denotes VIII) and mTOR (rapamycin, Torin-1 and PI-103). (D) L929 cells with mTOR siRNA knockdown were harvested for western blot or treated with zVAD.fmk or TNFα for 24 hrs.
T137 0-165 Sentence denotes VIII) and mTOR (rapamycin, Torin-1 and PI-103). (D) L929 cells with mTOR siRNA knockdown were harvested for western blot or treated with zVAD.fmk or TNFα for 24 hrs.

simple1

Id Subject Object Predicate Lexical cue
T30271 149-153 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T30546 149-153 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T30574 149-153 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T30564 149-153 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T30628 137-145 Entity denotes zVAD.fmk
T30626 149-164 Protein denotes TNFα for 24 hrs
T30624 16-25 Entity denotes rapamycin
T30622 68-72 Protein denotes mTOR
T30620 39-45 Entity denotes PI-103
T30619 10-46 Protein denotes mTOR (rapamycin, Torin-1 and PI-103)
T30615 52-88 Entity denotes L929 cells with mTOR siRNA knockdown
T30614 27-34 Entity denotes Torin-1
T30612 0-4 Protein denotes VIII
T30607 158-164 Protein denotes 24 hrs
T30605 52-56 Entity denotes L929

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T30520 164-165 . denotes .
T30519 161-164 NNS denotes hrs
T30518 158-160 CD denotes 24
T30517 154-157 IN denotes for
T30516 149-153 NNP denotes TNFα
T30515 146-148 CC denotes or
T30489 15-16 -LRB- denotes (
T30488 10-14 NNP denotes mTOR
T30487 6-9 CC denotes and
T30486 4-5 -RRB- denotes )
T30485 0-4 NNP denotes VIII
T30514 137-145 NNP denotes zVAD.fmk
T30513 132-136 IN denotes with
T30512 124-131 VBN denotes treated
T30511 121-123 CC denotes or
T30510 116-120 NN denotes blot
T30509 108-115 JJ denotes western
T30508 104-107 IN denotes for
T30507 94-103 VBN denotes harvested
T30506 89-93 VBD denotes were
T30505 79-88 NN denotes knockdown
T30504 73-78 NNP denotes siRNA
T30503 68-72 NNP denotes mTOR
T30502 63-67 IN denotes with
T30501 57-62 NNS denotes cells
T30500 52-56 NNP denotes L929
T30499 50-51 -RRB- denotes )
T30498 49-50 NNP denotes D
T30497 48-49 -LRB- denotes (
T30496 46-47 . denotes .
T30495 45-46 -RRB- denotes )
T30494 39-45 NNP denotes PI-103
T30493 35-38 CC denotes and
T30492 27-34 NNP denotes Torin-1
T30491 25-26 , denotes ,
T30490 16-25 NN denotes rapamycin
R21143 T30485 T30485 ROOT VIII,VIII
R21144 T30486 T30485 punct ),VIII
R21145 T30487 T30485 cc and,VIII
R21146 T30488 T30485 conj mTOR,VIII
R21147 T30489 T30490 punct (,rapamycin
R21148 T30490 T30485 appos rapamycin,VIII
R21149 T30491 T30490 punct ",",rapamycin
R21150 T30492 T30490 conj Torin-1,rapamycin
R21151 T30493 T30492 cc and,Torin-1
R21152 T30494 T30492 conj PI-103,Torin-1
R21153 T30495 T30492 punct ),Torin-1
R21154 T30496 T30485 punct .,VIII
R21155 T30497 T30501 punct (,cells
R21156 T30498 T30501 compound D,cells
R21157 T30499 T30500 punct ),L929
R21158 T30500 T30501 compound L929,cells
R21159 T30501 T30507 nsubjpass cells,harvested
R21160 T30502 T30501 prep with,cells
R21161 T30503 T30505 compound mTOR,knockdown
R21162 T30504 T30505 compound siRNA,knockdown
R21163 T30505 T30502 pobj knockdown,with
R21164 T30506 T30507 auxpass were,harvested
R21165 T30507 T30507 ROOT harvested,harvested
R21166 T30508 T30507 prep for,harvested
R21167 T30509 T30510 amod western,blot
R21168 T30510 T30508 pobj blot,for
R21169 T30511 T30507 cc or,harvested
R21170 T30512 T30507 conj treated,harvested
R21171 T30513 T30512 prep with,treated
R21172 T30514 T30513 pobj zVAD.fmk,with
R21173 T30515 T30514 cc or,zVAD.fmk
R21174 T30516 T30514 conj TNFα,zVAD.fmk
R21175 T30517 T30512 prep for,treated
R21176 T30518 T30519 nummod 24,hrs
R21177 T30519 T30517 pobj hrs,for
R21178 T30520 T30507 punct .,harvested

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T30589 79-88 Negative_regulation denotes knockdown
T30588 137-153 Protein denotes zVAD.fmk or TNFα
T30587 68-78 Protein denotes mTOR siRNA
T30583 10-14 Protein denotes mTOR
R21203 T30587 T30589 themeOf mTOR siRNA,knockdown

test3

Id Subject Object Predicate Lexical cue
T30232 149-153 Protein denotes TNFα
T30225 149-153 Protein denotes TNFα