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PMC:3585731 / 15996-16233 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T5149 207-222 Phosphorylation denotes phosphorylation
T5148 184-192 Positive_regulation denotes increase
T5147 55-70 Phosphorylation denotes phosphorylation
T5088 169-173 Protein denotes RIP1
R3515 T5088 T5148 causeOf RIP1,increase
R3536 T5149 T5148 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6310 235-236 -RRB- denotes )
T6309 234-235 NN denotes E
T6308 232-233 -COMMA- denotes ,
T6307 229-232 NN denotes S3D
T6306 224-228 NNP denotes Fig.
T6305 223-224 -LRB- denotes (
T6304 207-222 NN denotes phosphorylation
T6303 200-206 NN denotes Thr308
T6302 196-199 NN denotes Akt
T6301 193-195 IN denotes in
T6300 184-192 NN denotes increase
T6299 169-183 JJ denotes RIP1-dependent
T6298 148-168 JJ denotes necroptosis-specific
T6297 140-147 VB denotes delayed
T6296 133-139 JJ denotes robust
T6295 131-132 DT denotes a
T6294 124-130 VB denotes showed
T6293 119-123 RB denotes also
T6292 113-118 WDT denotes which
T6291 111-112 -COMMA- denotes ,
T6290 106-111 NN denotes assay
T6289 100-105 NN denotes ELISA
T6288 87-99 JJ denotes quantitative
T6287 85-86 DT denotes a
T6286 79-84 VB denotes using
T6285 71-78 NN denotes changes
T6284 55-70 NN denotes phosphorylation
T6283 48-54 NN denotes Ser473
T6282 44-47 CC denotes and
T6281 37-43 NN denotes Thr308
T6280 33-36 NN denotes Akt
T6279 29-32 DT denotes the
T6278 26-28 IN denotes of
T6277 17-25 NN denotes kinetics
T6276 13-16 DT denotes the
T6275 3-12 VB denotes confirmed
T6274 0-2 PRP denotes We
R4325 T6274 T6275 arg1Of We,confirmed
R4326 T6274 T6286 arg1Of We,using
R4327 T6275 T6286 modOf confirmed,using
R4328 T6277 T6275 arg2Of kinetics,confirmed
R4329 T6277 T6276 arg1Of kinetics,the
R4330 T6277 T6278 arg1Of kinetics,of
R4331 T6281 T6282 arg1Of Thr308,and
R4332 T6283 T6282 arg2Of Ser473,and
R4333 T6285 T6278 arg2Of changes,of
R4334 T6285 T6279 arg1Of changes,the
R4335 T6285 T6280 arg1Of changes,Akt
R4336 T6285 T6281 arg1Of changes,Thr308
R4337 T6285 T6283 arg1Of changes,Ser473
R4338 T6285 T6284 arg1Of changes,phosphorylation
R4339 T6290 T6286 arg2Of assay,using
R4340 T6290 T6287 arg1Of assay,a
R4341 T6290 T6288 arg1Of assay,quantitative
R4342 T6290 T6289 arg1Of assay,ELISA
R4343 T6290 T6291 arg1Of assay,","
R4344 T6290 T6292 arg1Of assay,which
R4345 T6290 T6294 arg1Of assay,showed
R4346 T6294 T6293 arg1Of showed,also
R4347 T6294 T6305 arg1Of showed,(
R4348 T6300 T6294 arg2Of increase,showed
R4349 T6300 T6295 arg1Of increase,a
R4350 T6300 T6296 arg1Of increase,robust
R4351 T6300 T6297 arg2Of increase,delayed
R4352 T6300 T6298 arg1Of increase,necroptosis-specific
R4353 T6300 T6299 arg1Of increase,RIP1-dependent
R4354 T6300 T6301 arg1Of increase,in
R4355 T6304 T6301 arg2Of phosphorylation,in
R4356 T6304 T6302 arg1Of phosphorylation,Akt
R4357 T6304 T6303 arg1Of phosphorylation,Thr308
R4358 T6307 T6305 arg2Of S3D,(
R4359 T6307 T6306 arg1Of S3D,Fig.
R4360 T6307 T6308 arg1Of S3D,","
R4361 T6309 T6308 arg2Of E,","
R4362 T6310 T6305 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5399 169-173 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6490 196-199 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6489 33-36 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6434 169-173 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T6518 196-199 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6517 33-36 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6462 196-199 http://www.uniprot.org/uniprot/P31749 denotes Akt
T6461 33-36 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T5480 207-222 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5479 55-70 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5420 148-159 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T5410 148-159 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

sentences

Id Subject Object Predicate Lexical cue
T5308 0-237 Sentence denotes We confirmed the kinetics of the Akt Thr308 and Ser473 phosphorylation changes using a quantitative ELISA assay, which also showed a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation (Fig. S3D, E).
T100 0-237 Sentence denotes We confirmed the kinetics of the Akt Thr308 and Ser473 phosphorylation changes using a quantitative ELISA assay, which also showed a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation (Fig. S3D, E).

simple1

Id Subject Object Predicate Lexical cue
T5552 169-173 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6411 169-173 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6692 169-173 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T6572 169-173 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7300 113-222 Positive_regulation denotes which also showed a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation
T7295 131-222 Regulation denotes a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation
T7288 193-222 Phosphorylation denotes in Akt Thr308 phosphorylation
T7283 131-222 Negative_regulation denotes a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation
T7266 33-36 Protein denotes Akt
T7242 48-54 Entity denotes Ser473
T7236 196-206 Entity denotes Akt Thr308
T7222 26-43 Entity denotes of the Akt Thr308
T7206 224-227 Protein denotes Fig
T7205 196-199 Protein denotes Akt
T7164 169-183 Protein denotes RIP1-dependent
R4707 T7164 T7295 causeOf RIP1-dependent,a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation
R4733 T7205 T7288 themeOf Akt,in Akt Thr308 phosphorylation
R4749 T7236 T7205 partOf Akt Thr308,Akt
R4750 T7236 T7288 siteOf Akt Thr308,in Akt Thr308 phosphorylation
R4775 T7288 T7300 themeOf in Akt Thr308 phosphorylation,which also showed a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation
R4776 T7300 T7283 themeOf which also showed a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation,a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation
R4777 T7300 T7295 themeOf which also showed a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation,a robust delayed necroptosis-specific RIP1-dependent increase in Akt Thr308 phosphorylation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6917 55-70 Phosphorylation denotes phosphorylation
T6916 229-232 Protein denotes S3D
T6915 224-227 Protein denotes Fig
T6914 196-199 Protein denotes Akt
T6913 169-173 Protein denotes RIP1
T6912 33-43 Protein denotes Akt Thr308
T6919 184-192 Positive_regulation denotes increase
T6918 207-222 Phosphorylation denotes phosphorylation
R4602 T6918 T6919 themeOf phosphorylation,increase
R4617 T6912 T6917 themeOf Akt Thr308,phosphorylation
R4618 T6913 T6919 causeOf RIP1,increase
R4620 T6914 T6918 themeOf Akt,phosphorylation

test3

Id Subject Object Predicate Lexical cue
T5274 207-222 Phosphorylation denotes phosphorylation
T5273 184-192 Positive_regulation denotes increase
T5272 174-183 Regulation denotes dependent
T5271 169-173 Protein denotes RIP1
T5184 169-173 Protein denotes RIP1
R3577 T5271 T5272 causeOf RIP1,dependent
R3578 T5273 T5272 themeOf increase,dependent
R3579 T5274 T5273 themeOf phosphorylation,increase