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PMC:3585731 / 13741-13881 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T5118 82-97 Phosphorylation denotes phosphorylation
T5117 59-67 Positive_regulation denotes increase
T5116 45-54 Negative_regulation denotes prevented
T5115 16-25 Negative_regulation denotes inhibitor
T5073 78-81 Protein denotes Akt
T5072 4-8 Protein denotes RIP1
R3505 T5072 T5115 themeOf RIP1,inhibitor
R3506 T5073 T5118 themeOf Akt,phosphorylation
R3521 T5115 T5116 causeOf inhibitor,prevented
R3522 T5117 T5116 themeOf increase,prevented
R3523 T5118 T5117 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6028 138-139 -RRB- denotes )
T6027 135-138 NN denotes S1D
T6026 130-134 NNP denotes Fig.
T6025 128-129 -COMMA- denotes ,
T6024 126-128 NNP denotes 3A
T6023 121-125 NNP denotes Fig.
T6022 120-121 -LRB- denotes (
T6021 116-119 RB denotes not
T6020 112-115 VB denotes did
T6019 105-111 NN denotes Nec-1i
T6018 99-104 IN denotes while
T6017 97-98 -COMMA- denotes ,
T6016 82-97 NN denotes phosphorylation
T6015 78-81 NN denotes Akt
T6014 71-77 NN denotes Thr308
T6013 68-70 IN denotes in
T6012 59-67 NN denotes increase
T6011 55-58 DT denotes the
T6010 45-54 VB denotes prevented
T6009 34-44 RB denotes completely
T6008 32-33 -COMMA- denotes ,
T6007 27-32 NN denotes Nec-1
T6006 25-26 -COMMA- denotes ,
T6005 16-25 NN denotes inhibitor
T6004 9-15 NN denotes kinase
T6003 4-8 NN denotes RIP1
T6002 0-3 DT denotes The
R4054 T6005 T6002 arg1Of inhibitor,The
R4055 T6005 T6003 arg1Of inhibitor,RIP1
R4056 T6005 T6004 arg1Of inhibitor,kinase
R4057 T6005 T6006 arg1Of inhibitor,","
R4058 T6005 T6010 arg1Of inhibitor,prevented
R4059 T6007 T6006 arg2Of Nec-1,","
R4060 T6010 T6008 arg1Of prevented,","
R4061 T6010 T6009 arg1Of prevented,completely
R4062 T6010 T6017 arg1Of prevented,","
R4063 T6010 T6018 arg1Of prevented,while
R4064 T6012 T6010 arg2Of increase,prevented
R4065 T6012 T6011 arg1Of increase,the
R4066 T6012 T6013 arg1Of increase,in
R4067 T6016 T6013 arg2Of phosphorylation,in
R4068 T6016 T6014 arg1Of phosphorylation,Thr308
R4069 T6016 T6015 arg1Of phosphorylation,Akt
R4070 T6019 T6020 arg1Of Nec-1i,did
R4071 T6020 T6018 arg2Of did,while
R4072 T6020 T6021 arg1Of did,not
R4073 T6020 T6022 arg1Of did,(
R4074 T6024 T6022 arg2Of 3A,(
R4075 T6024 T6023 arg1Of 3A,Fig.
R4076 T6024 T6025 arg1Of 3A,","
R4077 T6027 T6025 arg2Of S1D,","
R4078 T6027 T6026 arg1Of S1D,Fig.
R4079 T6028 T6022 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5384 78-81 Protein denotes Akt
T5383 4-8 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6507 78-81 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6479 78-81 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6430 4-8 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T6451 78-81 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T5467 82-97 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5462 9-25 http://purl.obolibrary.org/obo/GO_0033673 denotes kinase inhibitor

sentences

Id Subject Object Predicate Lexical cue
T5297 0-140 Sentence denotes The RIP1 kinase inhibitor, Nec-1, completely prevented the increase in Thr308 Akt phosphorylation, while Nec-1i did not (Fig. 3A, Fig. S1D).
T88 0-140 Sentence denotes The RIP1 kinase inhibitor, Nec-1, completely prevented the increase in Thr308 Akt phosphorylation, while Nec-1i did not (Fig. 3A, Fig. S1D).

simple1

Id Subject Object Predicate Lexical cue
T5537 78-81 Protein denotes Akt
T5536 4-8 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6420 16-25 Negative_regulation denotes inhibitor
T6419 59-67 Positive_regulation denotes increase
T6418 82-97 Phosphorylation denotes phosphorylation
T6417 45-54 Negative_regulation denotes prevented
T6396 78-81 Protein denotes Akt
T6395 4-8 Protein denotes RIP1
R4407 T6395 T6420 themeOf RIP1,inhibitor
R4408 T6396 T6418 themeOf Akt,phosphorylation
R4418 T6418 T6419 themeOf phosphorylation,increase
R4419 T6419 T6417 themeOf increase,prevented

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6704 82-97 Phosphorylation denotes phosphorylation
T6703 45-54 Negative_regulation denotes prevented
T6702 16-25 Negative_regulation denotes inhibitor
T6701 59-67 Positive_regulation denotes increase
T6677 78-81 Protein denotes Akt
T6676 4-8 Protein denotes RIP1
R4487 T6676 T6702 themeOf RIP1,inhibitor
R4488 T6677 T6704 themeOf Akt,phosphorylation
R4495 T6701 T6703 themeOf increase,prevented
R4496 T6702 T6703 causeOf inhibitor,prevented
R4497 T6704 T6701 themeOf phosphorylation,increase

DLUT931

Id Subject Object Predicate Lexical cue
T6584 45-54 Negative_regulation denotes prevented
T6583 59-67 Positive_regulation denotes increase
T6582 82-97 Phosphorylation denotes phosphorylation
T6581 16-25 Negative_regulation denotes inhibitor
T6557 78-81 Protein denotes Akt
T6556 4-8 Protein denotes RIP1
R4432 T6556 T6581 themeOf RIP1,inhibitor
R4433 T6557 T6582 themeOf Akt,phosphorylation
R4447 T6581 T6584 causeOf inhibitor,prevented
R4448 T6582 T6583 themeOf phosphorylation,increase
R4449 T6583 T6584 themeOf increase,prevented

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7307 27-98 Negative_regulation denotes Nec-1, completely prevented the increase in Thr308 Akt phosphorylation,
T7303 68-97 Phosphorylation denotes in Thr308 Akt phosphorylation
T7301 55-98 Positive_regulation denotes the increase in Thr308 Akt phosphorylation,
T7253 27-32 Protein denotes Nec-1
T7210 0-26 Protein denotes The RIP1 kinase inhibitor,
T7199 0-26 Entity denotes The RIP1 kinase inhibitor,
T7175 71-77 Entity denotes Thr308
T7159 0-26 Protein denotes The RIP1 kinase inhibitor,
T7156 71-81 Protein denotes Thr308 Akt
R4704 T7156 T7303 themeOf Thr308 Akt,in Thr308 Akt phosphorylation
R4719 T7175 T7156 partOf Thr308,Thr308 Akt
R4720 T7175 T7303 siteOf Thr308,in Thr308 Akt phosphorylation
R4759 T7253 T7307 causeOf Nec-1,"Nec-1, completely prevented the increase in Thr308 Akt phosphorylation,"
R4778 T7301 T7307 themeOf "the increase in Thr308 Akt phosphorylation,","Nec-1, completely prevented the increase in Thr308 Akt phosphorylation,"
R4779 T7303 T7301 themeOf in Thr308 Akt phosphorylation,"the increase in Thr308 Akt phosphorylation,"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6807 45-54 Negative_regulation denotes prevented
T6806 59-67 Positive_regulation denotes increase
T6805 82-97 Phosphorylation denotes phosphorylation
T6804 135-138 Protein denotes S1D
T6803 130-133 Protein denotes Fig
T6802 121-128 Protein denotes Fig. 3A
T6801 105-111 Protein denotes Nec-1i
T6800 71-81 Protein denotes Thr308 Akt
T6799 27-32 Protein denotes Nec-1
T6798 4-15 Protein denotes RIP1 kinase
R4540 T6799 T6807 causeOf Nec-1,prevented
R4542 T6800 T6805 themeOf Thr308 Akt,phosphorylation
R4544 T6805 T6806 themeOf phosphorylation,increase
R4546 T6806 T6807 themeOf increase,prevented

test3

Id Subject Object Predicate Lexical cue
T5229 82-97 Phosphorylation denotes phosphorylation
T5228 78-81 Protein denotes Akt
T5227 59-67 Positive_regulation denotes increase
T5226 45-54 Negative_regulation denotes prevented
T5225 16-25 Negative_regulation denotes inhibitor
T5224 4-8 Protein denotes RIP1
T5169 78-81 Protein denotes Akt
T5168 4-8 Protein denotes RIP1
R3551 T5224 T5225 themeOf RIP1,inhibitor
R3552 T5225 T5227 causeOf inhibitor,increase
R3553 T5225 T5226 causeOf inhibitor,prevented
R3554 T5227 T5226 themeOf increase,prevented
R3555 T5228 T5229 themeOf Akt,phosphorylation
R3556 T5229 T5227 themeOf phosphorylation,increase