PMC:3585731 / 13176-13740
Annnotations
testone
{"project":"testone","denotations":[{"id":"T29388","span":{"begin":66,"end":81},"obj":"Phosphorylation"},{"id":"T29387","span":{"begin":56,"end":65},"obj":"Regulation"},{"id":"T29386","span":{"begin":456,"end":460},"obj":"Protein"},{"id":"T29385","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29384","span":{"begin":284,"end":288},"obj":"Protein"},{"id":"T29383","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T29382","span":{"begin":44,"end":48},"obj":"Protein"}],"relations":[{"id":"R20360","pred":"themeOf","subj":"T29388","obj":"T29387"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T29552","span":{"begin":167,"end":170},"obj":"IN"},{"id":"T29630","span":{"begin":553,"end":563},"obj":"NN"},{"id":"T29629","span":{"begin":543,"end":552},"obj":"JJ"},{"id":"T29628","span":{"begin":539,"end":542},"obj":"DT"},{"id":"T29627","span":{"begin":534,"end":538},"obj":"IN"},{"id":"T29626","span":{"begin":529,"end":533},"obj":"NN"},{"id":"T29625","span":{"begin":521,"end":528},"obj":"JJ"},{"id":"T29624","span":{"begin":518,"end":520},"obj":"IN"},{"id":"T29623","span":{"begin":509,"end":517},"obj":"VB"},{"id":"T29622","span":{"begin":506,"end":508},"obj":"NN"},{"id":"T29621","span":{"begin":504,"end":505},"obj":"CD"},{"id":"T29620","span":{"begin":501,"end":503},"obj":"CC"},{"id":"T29619","span":{"begin":497,"end":500},"obj":"NN"},{"id":"T29618","span":{"begin":494,"end":496},"obj":"CD"},{"id":"T29617","span":{"begin":490,"end":493},"obj":"IN"},{"id":"T29616","span":{"begin":488,"end":489},"obj":"-RRB-"},{"id":"T29615","span":{"begin":478,"end":488},"obj":"NN"},{"id":"T29614","span":{"begin":473,"end":477},"obj":"JJ"},{"id":"T29613","span":{"begin":467,"end":472},"obj":"NN"},{"id":"T29612","span":{"begin":466,"end":467},"obj":"-LRB-"},{"id":"T29611","span":{"begin":456,"end":465},"obj":"NN"},{"id":"T29610","span":{"begin":453,"end":455},"obj":"CC"},{"id":"T29609","span":{"begin":448,"end":452},"obj":"NN"},{"id":"T29608","span":{"begin":443,"end":447},"obj":"IN"},{"id":"T29607","span":{"begin":432,"end":442},"obj":"VB"},{"id":"T29606","span":{"begin":426,"end":431},"obj":"NN"},{"id":"T29605","span":{"begin":422,"end":425},"obj":"DT"},{"id":"T29604","span":{"begin":419,"end":421},"obj":"TO"},{"id":"T29603","span":{"begin":413,"end":418},"obj":"VB"},{"id":"T29602","span":{"begin":409,"end":412},"obj":"VB"},{"id":"T29601","span":{"begin":403,"end":408},"obj":"NN"},{"id":"T29600","span":{"begin":401,"end":402},"obj":"-RRB-"},{"id":"T29599","span":{"begin":400,"end":401},"obj":"NN"},{"id":"T29598","span":{"begin":399,"end":400},"obj":"-LRB-"},{"id":"T29597","span":{"begin":393,"end":398},"obj":"NN"},{"id":"T29596","span":{"begin":385,"end":392},"obj":"JJ"},{"id":"T29595","span":{"begin":381,"end":384},"obj":"IN"},{"id":"T29594","span":{"begin":374,"end":380},"obj":"NN"},{"id":"T29593","span":{"begin":369,"end":373},"obj":"NN"},{"id":"T29592","span":{"begin":359,"end":368},"obj":"VB"},{"id":"T29591","span":{"begin":355,"end":358},"obj":"DT"},{"id":"T29590","span":{"begin":352,"end":354},"obj":"IN"},{"id":"T29589","span":{"begin":342,"end":351},"obj":"VB"},{"id":"T29588","span":{"begin":337,"end":341},"obj":"VB"},{"id":"T29587","span":{"begin":329,"end":336},"obj":"NN"},{"id":"T29586","span":{"begin":325,"end":328},"obj":"CC"},{"id":"T29585","span":{"begin":323,"end":324},"obj":"-RRB-"},{"id":"T29584","span":{"begin":322,"end":323},"obj":"NN"},{"id":"T29583","span":{"begin":320,"end":321},"obj":"-COMMA-"},{"id":"T29582","span":{"begin":310,"end":320},"obj":"NN"},{"id":"T29581","span":{"begin":305,"end":309},"obj":"JJ"},{"id":"T29580","span":{"begin":299,"end":304},"obj":"NN"},{"id":"T29579","span":{"begin":298,"end":299},"obj":"-LRB-"},{"id":"T29578","span":{"begin":284,"end":297},"obj":"NN"},{"id":"T29577","span":{"begin":281,"end":283},"obj":"CC"},{"id":"T29576","span":{"begin":279,"end":280},"obj":"-RRB-"},{"id":"T29575","span":{"begin":278,"end":279},"obj":"NN"},{"id":"T29574","span":{"begin":277,"end":278},"obj":"-LRB-"},{"id":"T29573","span":{"begin":268,"end":276},"obj":"NN"},{"id":"T29572","span":{"begin":263,"end":267},"obj":"IN"},{"id":"T29571","span":{"begin":255,"end":262},"obj":"VB"},{"id":"T29570","span":{"begin":250,"end":254},"obj":"VB"},{"id":"T29569","span":{"begin":244,"end":249},"obj":"NN"},{"id":"T29568","span":{"begin":239,"end":243},"obj":"NN"},{"id":"T29567","span":{"begin":237,"end":238},"obj":"-RRB-"},{"id":"T29566","span":{"begin":236,"end":237},"obj":"NN"},{"id":"T29565","span":{"begin":235,"end":236},"obj":"-COMMA-"},{"id":"T29564","span":{"begin":234,"end":235},"obj":"NN"},{"id":"T29563","span":{"begin":233,"end":234},"obj":"-LRB-"},{"id":"T29562","span":{"begin":221,"end":232},"obj":"NN"},{"id":"T29561","span":{"begin":211,"end":220},"obj":"VB"},{"id":"T29560","span":{"begin":206,"end":210},"obj":"IN"},{"id":"T29559","span":{"begin":197,"end":205},"obj":"NN"},{"id":"T29558","span":{"begin":189,"end":196},"obj":"JJ"},{"id":"T29557","span":{"begin":186,"end":188},"obj":"IN"},{"id":"T29556","span":{"begin":177,"end":185},"obj":"VB"},{"id":"T29555","span":{"begin":175,"end":176},"obj":"-COMMA-"},{"id":"T29554","span":{"begin":173,"end":175},"obj":"NN"},{"id":"T29553","span":{"begin":171,"end":172},"obj":"CD"},{"id":"T29551","span":{"begin":162,"end":166},"obj":"NN"},{"id":"T29550","span":{"begin":159,"end":161},"obj":"CC"},{"id":"T29549","span":{"begin":150,"end":158},"obj":"NN"},{"id":"T29548","span":{"begin":145,"end":149},"obj":"IN"},{"id":"T29547","span":{"begin":137,"end":144},"obj":"VB"},{"id":"T29546","span":{"begin":132,"end":136},"obj":"VB"},{"id":"T29545","span":{"begin":126,"end":131},"obj":"NN"},{"id":"T29544","span":{"begin":121,"end":125},"obj":"NN"},{"id":"T29543","span":{"begin":119,"end":120},"obj":"-RRB-"},{"id":"T29542","span":{"begin":118,"end":119},"obj":"NN"},{"id":"T29541","span":{"begin":117,"end":118},"obj":"-LRB-"},{"id":"T29540","span":{"begin":104,"end":115},"obj":"NN"},{"id":"T29539","span":{"begin":97,"end":103},"obj":"IN"},{"id":"T29538","span":{"begin":93,"end":96},"obj":"NN"},{"id":"T29537","span":{"begin":89,"end":92},"obj":"CC"},{"id":"T29536","span":{"begin":85,"end":88},"obj":"NN"},{"id":"T29535","span":{"begin":82,"end":84},"obj":"IN"},{"id":"T29534","span":{"begin":66,"end":81},"obj":"NN"},{"id":"T29533","span":{"begin":49,"end":65},"obj":"JJ"},{"id":"T29532","span":{"begin":44,"end":48},"obj":"NN"}],"relations":[{"id":"R20455","pred":"arg1Of","subj":"T29534","obj":"T29532"},{"id":"R20456","pred":"arg1Of","subj":"T29534","obj":"T29533"},{"id":"R20457","pred":"arg1Of","subj":"T29534","obj":"T29535"},{"id":"R20458","pred":"arg1Of","subj":"T29534","obj":"T29539"},{"id":"R20459","pred":"arg1Of","subj":"T29536","obj":"T29537"},{"id":"R20460","pred":"arg2Of","subj":"T29537","obj":"T29535"},{"id":"R20461","pred":"arg2Of","subj":"T29538","obj":"T29537"},{"id":"R20462","pred":"arg2Of","subj":"T29540","obj":"T29539"},{"id":"R20463","pred":"arg2Of","subj":"T29542","obj":"T29541"},{"id":"R20464","pred":"arg3Of","subj":"T29543","obj":"T29541"},{"id":"R20465","pred":"arg1Of","subj":"T29545","obj":"T29541"},{"id":"R20466","pred":"arg1Of","subj":"T29545","obj":"T29544"},{"id":"R20467","pred":"arg1Of","subj":"T29545","obj":"T29546"},{"id":"R20468","pred":"arg2Of","subj":"T29545","obj":"T29547"},{"id":"R20469","pred":"arg2Of","subj":"T29547","obj":"T29546"},{"id":"R20470","pred":"arg1Of","subj":"T29547","obj":"T29548"},{"id":"R20471","pred":"arg1Of","subj":"T29547","obj":"T29552"},{"id":"R20472","pred":"arg1Of","subj":"T29547","obj":"T29555"},{"id":"R20473","pred":"modOf","subj":"T29547","obj":"T29556"},{"id":"R20474","pred":"arg1Of","subj":"T29549","obj":"T29550"},{"id":"R20475","pred":"arg2Of","subj":"T29550","obj":"T29548"},{"id":"R20476","pred":"arg2Of","subj":"T29551","obj":"T29550"},{"id":"R20477","pred":"arg2Of","subj":"T29554","obj":"T29552"},{"id":"R20478","pred":"arg1Of","subj":"T29554","obj":"T29553"},{"id":"R20479","pred":"arg1Of","subj":"T29559","obj":"T29556"},{"id":"R20480","pred":"arg2Of","subj":"T29559","obj":"T29557"},{"id":"R20481","pred":"arg1Of","subj":"T29559","obj":"T29558"},{"id":"R20482","pred":"arg1Of","subj":"T29559","obj":"T29560"},{"id":"R20483","pred":"arg2Of","subj":"T29562","obj":"T29560"},{"id":"R20484","pred":"arg2Of","subj":"T29562","obj":"T29561"},{"id":"R20485","pred":"arg2Of","subj":"T29564","obj":"T29563"},{"id":"R20486","pred":"arg1Of","subj":"T29564","obj":"T29565"},{"id":"R20487","pred":"arg1Of","subj":"T29564","obj":"T29566"},{"id":"R20488","pred":"arg3Of","subj":"T29567","obj":"T29563"},{"id":"R20489","pred":"arg1Of","subj":"T29569","obj":"T29568"},{"id":"R20490","pred":"arg1Of","subj":"T29569","obj":"T29570"},{"id":"R20491","pred":"arg2Of","subj":"T29569","obj":"T29571"},{"id":"R20492","pred":"arg2Of","subj":"T29571","obj":"T29570"},{"id":"R20493","pred":"arg1Of","subj":"T29571","obj":"T29572"},{"id":"R20494","pred":"arg1Of","subj":"T29573","obj":"T29574"},{"id":"R20495","pred":"arg1Of","subj":"T29573","obj":"T29577"},{"id":"R20496","pred":"arg2Of","subj":"T29575","obj":"T29574"},{"id":"R20497","pred":"arg3Of","subj":"T29576","obj":"T29574"},{"id":"R20498","pred":"arg2Of","subj":"T29577","obj":"T29572"},{"id":"R20499","pred":"arg2Of","subj":"T29578","obj":"T29577"},{"id":"R20500","pred":"arg1Of","subj":"T29578","obj":"T29579"},{"id":"R20501","pred":"arg2Of","subj":"T29582","obj":"T29579"},{"id":"R20502","pred":"arg1Of","subj":"T29582","obj":"T29580"},{"id":"R20503","pred":"arg1Of","subj":"T29582","obj":"T29581"},{"id":"R20504","pred":"arg1Of","subj":"T29582","obj":"T29583"},{"id":"R20505","pred":"arg2Of","subj":"T29584","obj":"T29583"},{"id":"R20506","pred":"arg3Of","subj":"T29585","obj":"T29579"},{"id":"R20507","pred":"arg1Of","subj":"T29587","obj":"T29588"},{"id":"R20508","pred":"arg2Of","subj":"T29587","obj":"T29589"},{"id":"R20509","pred":"arg2Of","subj":"T29589","obj":"T29588"},{"id":"R20510","pred":"arg1Of","subj":"T29589","obj":"T29590"},{"id":"R20511","pred":"arg2Of","subj":"T29594","obj":"T29590"},{"id":"R20512","pred":"arg1Of","subj":"T29594","obj":"T29591"},{"id":"R20513","pred":"arg2Of","subj":"T29594","obj":"T29592"},{"id":"R20514","pred":"arg1Of","subj":"T29594","obj":"T29593"},{"id":"R20515","pred":"arg1Of","subj":"T29594","obj":"T29595"},{"id":"R20516","pred":"arg2Of","subj":"T29597","obj":"T29595"},{"id":"R20517","pred":"arg1Of","subj":"T29597","obj":"T29596"},{"id":"R20518","pred":"arg1Of","subj":"T29597","obj":"T29598"},{"id":"R20519","pred":"arg2Of","subj":"T29599","obj":"T29598"},{"id":"R20520","pred":"arg3Of","subj":"T29600","obj":"T29598"},{"id":"R20521","pred":"arg1Of","subj":"T29601","obj":"T29602"},{"id":"R20522","pred":"arg2Of","subj":"T29601","obj":"T29603"},{"id":"R20523","pred":"arg2Of","subj":"T29603","obj":"T29602"},{"id":"R20524","pred":"arg1Of","subj":"T29603","obj":"T29604"},{"id":"R20525","pred":"arg2Of","subj":"T29606","obj":"T29604"},{"id":"R20526","pred":"arg1Of","subj":"T29606","obj":"T29605"},{"id":"R20527","pred":"arg2Of","subj":"T29606","obj":"T29607"},{"id":"R20528","pred":"arg1Of","subj":"T29607","obj":"T29608"},{"id":"R20529","pred":"arg1Of","subj":"T29607","obj":"T29617"},{"id":"R20530","pred":"modOf","subj":"T29607","obj":"T29623"},{"id":"R20531","pred":"arg1Of","subj":"T29609","obj":"T29610"},{"id":"R20532","pred":"arg2Of","subj":"T29610","obj":"T29608"},{"id":"R20533","pred":"arg1Of","subj":"T29610","obj":"T29612"},{"id":"R20534","pred":"arg2Of","subj":"T29611","obj":"T29610"},{"id":"R20535","pred":"arg2Of","subj":"T29615","obj":"T29612"},{"id":"R20536","pred":"arg1Of","subj":"T29615","obj":"T29613"},{"id":"R20537","pred":"arg1Of","subj":"T29615","obj":"T29614"},{"id":"R20538","pred":"arg3Of","subj":"T29616","obj":"T29612"},{"id":"R20539","pred":"arg1Of","subj":"T29619","obj":"T29618"},{"id":"R20540","pred":"arg1Of","subj":"T29619","obj":"T29620"},{"id":"R20541","pred":"arg2Of","subj":"T29620","obj":"T29617"},{"id":"R20542","pred":"arg2Of","subj":"T29622","obj":"T29620"},{"id":"R20543","pred":"arg1Of","subj":"T29622","obj":"T29621"},{"id":"R20544","pred":"arg1Of","subj":"T29626","obj":"T29623"},{"id":"R20545","pred":"arg2Of","subj":"T29626","obj":"T29624"},{"id":"R20546","pred":"arg1Of","subj":"T29626","obj":"T29625"},{"id":"R20547","pred":"arg1Of","subj":"T29626","obj":"T29627"},{"id":"R20548","pred":"arg2Of","subj":"T29630","obj":"T29627"},{"id":"R20549","pred":"arg1Of","subj":"T29630","obj":"T29628"},{"id":"R20550","pred":"arg1Of","subj":"T29630","obj":"T29629"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T29413","span":{"begin":456,"end":460},"obj":"Protein"},{"id":"T29412","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29411","span":{"begin":284,"end":288},"obj":"Protein"},{"id":"T29410","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T29409","span":{"begin":44,"end":48},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T29656","span":{"begin":456,"end":460},"obj":"http://www.uniprot.org/uniprot/Q788Q8"},{"id":"T29655","span":{"begin":448,"end":452},"obj":"http://www.uniprot.org/uniprot/Q788Q8"},{"id":"T29654","span":{"begin":284,"end":288},"obj":"http://www.uniprot.org/uniprot/Q788Q8"},{"id":"T29653","span":{"begin":162,"end":166},"obj":"http://www.uniprot.org/uniprot/P01375"},{"id":"T29652","span":{"begin":85,"end":88},"obj":"http://www.uniprot.org/uniprot/Q9Y243"},{"id":"T29651","span":{"begin":85,"end":88},"obj":"http://www.uniprot.org/uniprot/P31751"},{"id":"T29650","span":{"begin":85,"end":88},"obj":"http://www.uniprot.org/uniprot/P31749"},{"id":"T29649","span":{"begin":44,"end":48},"obj":"http://www.uniprot.org/uniprot/Q13546"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
UBERON-AE
{"project":"UBERON-AE","denotations":[{"id":"T29401","span":{"begin":467,"end":472},"obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"T29400","span":{"begin":299,"end":304},"obj":"http://purl.obolibrary.org/obo/UBERON_0001977"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T29417","span":{"begin":104,"end":115},"obj":"http://purl.obolibrary.org/obo/GO_0097528"},{"id":"T29416","span":{"begin":104,"end":115},"obj":"http://purl.obolibrary.org/obo/GO_0070266"},{"id":"T29415","span":{"begin":93,"end":96},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T29414","span":{"begin":66,"end":81},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T29420","span":{"begin":553,"end":563},"obj":"http://purl.obolibrary.org/obo/GO_0003823"},{"id":"T29419","span":{"begin":221,"end":231},"obj":"http://purl.obolibrary.org/obo/GO_0003823"},{"id":"T29418","span":{"begin":93,"end":96},"obj":"http://purl.obolibrary.org/obo/GO_0004705"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T29427","span":{"begin":553,"end":563},"obj":"http://purl.obolibrary.org/obo/GO_0042571"},{"id":"T29426","span":{"begin":221,"end":231},"obj":"http://purl.obolibrary.org/obo/GO_0042571"},{"id":"T29425","span":{"begin":553,"end":563},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T29424","span":{"begin":221,"end":231},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T29423","span":{"begin":426,"end":431},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T29422","span":{"begin":244,"end":249},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T29421","span":{"begin":126,"end":131},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
sentences
{"project":"sentences","denotations":[{"id":"T29403","span":{"begin":117,"end":564},"obj":"Sentence"},{"id":"T29402","span":{"begin":44,"end":116},"obj":"Sentence"},{"id":"T86","span":{"begin":0,"end":116},"obj":"Sentence"},{"id":"T87","span":{"begin":117,"end":564},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
simple1
{"project":"simple1","denotations":[{"id":"T29437","span":{"begin":456,"end":460},"obj":"Protein"},{"id":"T29436","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29435","span":{"begin":284,"end":288},"obj":"Protein"},{"id":"T29434","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T29433","span":{"begin":44,"end":48},"obj":"Protein"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T29648","span":{"begin":49,"end":65},"obj":"Regulation"},{"id":"T29647","span":{"begin":66,"end":81},"obj":"Phosphorylation"},{"id":"T29646","span":{"begin":456,"end":460},"obj":"Protein"},{"id":"T29645","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29644","span":{"begin":284,"end":288},"obj":"Protein"},{"id":"T29643","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T29642","span":{"begin":44,"end":48},"obj":"Protein"}],"relations":[{"id":"R20562","pred":"themeOf","subj":"T29642","obj":"T29647"},{"id":"R20563","pred":"themeOf","subj":"T29647","obj":"T29648"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T29677","span":{"begin":66,"end":81},"obj":"Phosphorylation"},{"id":"T29676","span":{"begin":49,"end":65},"obj":"Regulation"},{"id":"T29675","span":{"begin":456,"end":460},"obj":"Protein"},{"id":"T29674","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29673","span":{"begin":284,"end":288},"obj":"Protein"},{"id":"T29672","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T29671","span":{"begin":44,"end":48},"obj":"Protein"}],"relations":[{"id":"R20568","pred":"themeOf","subj":"T29671","obj":"T29677"},{"id":"R20569","pred":"themeOf","subj":"T29677","obj":"T29676"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T29662","span":{"begin":66,"end":81},"obj":"Phosphorylation"},{"id":"T29661","span":{"begin":456,"end":460},"obj":"Protein"},{"id":"T29660","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29659","span":{"begin":284,"end":288},"obj":"Protein"},{"id":"T29658","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T29657","span":{"begin":44,"end":48},"obj":"Protein"},{"id":"T29663","span":{"begin":49,"end":65},"obj":"Regulation"}],"relations":[{"id":"R20564","pred":"themeOf","subj":"T29657","obj":"T29662"},{"id":"R20565","pred":"themeOf","subj":"T29662","obj":"T29663"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T29720","span":{"begin":44,"end":115},"obj":"Phosphorylation"},{"id":"T29719","span":{"begin":44,"end":115},"obj":"Phosphorylation"},{"id":"T29718","span":{"begin":44,"end":115},"obj":"Regulation"},{"id":"T29717","span":{"begin":44,"end":115},"obj":"Regulation"},{"id":"T29716","span":{"begin":403,"end":408},"obj":"Protein"},{"id":"T29715","span":{"begin":456,"end":460},"obj":"Protein"},{"id":"T29714","span":{"begin":162,"end":205},"obj":"Protein"},{"id":"T29713","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29712","span":{"begin":268,"end":280},"obj":"Entity"},{"id":"T29711","span":{"begin":221,"end":231},"obj":"Entity"},{"id":"T29710","span":{"begin":289,"end":297},"obj":"Entity"},{"id":"T29709","span":{"begin":49,"end":65},"obj":"Protein"},{"id":"T29708","span":{"begin":150,"end":158},"obj":"Entity"},{"id":"T29707","span":{"begin":44,"end":48},"obj":"Protein"},{"id":"T29706","span":{"begin":85,"end":88},"obj":"Protein"},{"id":"T29705","span":{"begin":93,"end":96},"obj":"Protein"},{"id":"T29704","span":{"begin":284,"end":288},"obj":"Protein"},{"id":"T29703","span":{"begin":553,"end":563},"obj":"Entity"},{"id":"T29702","span":{"begin":419,"end":460},"obj":"Entity"}],"relations":[{"id":"R20582","pred":"themeOf","subj":"T29705","obj":"T29719"},{"id":"R20583","pred":"themeOf","subj":"T29706","obj":"T29720"},{"id":"R20584","pred":"causeOf","subj":"T29707","obj":"T29719"},{"id":"R20585","pred":"causeOf","subj":"T29707","obj":"T29720"},{"id":"R20586","pred":"causeOf","subj":"T29709","obj":"T29717"},{"id":"R20587","pred":"causeOf","subj":"T29709","obj":"T29718"},{"id":"R20588","pred":"themeOf","subj":"T29719","obj":"T29717"},{"id":"R20589","pred":"themeOf","subj":"T29720","obj":"T29718"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T29641","span":{"begin":563,"end":564},"obj":"."},{"id":"T29640","span":{"begin":553,"end":563},"obj":"NNS"},{"id":"T29639","span":{"begin":543,"end":552},"obj":"VBN"},{"id":"T29638","span":{"begin":539,"end":542},"obj":"DT"},{"id":"T29637","span":{"begin":534,"end":538},"obj":"IN"},{"id":"T29636","span":{"begin":529,"end":533},"obj":"NN"},{"id":"T29635","span":{"begin":521,"end":528},"obj":"JJ"},{"id":"T29634","span":{"begin":518,"end":520},"obj":"IN"},{"id":"T29633","span":{"begin":509,"end":517},"obj":"VBN"},{"id":"T29632","span":{"begin":506,"end":508},"obj":"NN"},{"id":"T29631","span":{"begin":504,"end":505},"obj":"CD"},{"id":"T29531","span":{"begin":501,"end":503},"obj":"CC"},{"id":"T29530","span":{"begin":497,"end":500},"obj":"NN"},{"id":"T29529","span":{"begin":494,"end":496},"obj":"CD"},{"id":"T29528","span":{"begin":490,"end":493},"obj":"IN"},{"id":"T29527","span":{"begin":488,"end":489},"obj":"-RRB-"},{"id":"T29526","span":{"begin":478,"end":488},"obj":"NNS"},{"id":"T29525","span":{"begin":473,"end":477},"obj":"JJ"},{"id":"T29524","span":{"begin":467,"end":472},"obj":"NN"},{"id":"T29523","span":{"begin":466,"end":467},"obj":"-LRB-"},{"id":"T29522","span":{"begin":456,"end":465},"obj":"NNP"},{"id":"T29521","span":{"begin":453,"end":455},"obj":"CC"},{"id":"T29520","span":{"begin":448,"end":452},"obj":"NNP"},{"id":"T29519","span":{"begin":443,"end":447},"obj":"IN"},{"id":"T29518","span":{"begin":432,"end":442},"obj":"VBN"},{"id":"T29517","span":{"begin":426,"end":431},"obj":"NNS"},{"id":"T29516","span":{"begin":422,"end":425},"obj":"DT"},{"id":"T29515","span":{"begin":419,"end":421},"obj":"TO"},{"id":"T29514","span":{"begin":413,"end":418},"obj":"VBN"},{"id":"T29513","span":{"begin":409,"end":412},"obj":"VBD"},{"id":"T29512","span":{"begin":403,"end":408},"obj":"NN"},{"id":"T29511","span":{"begin":401,"end":402},"obj":"-RRB-"},{"id":"T29510","span":{"begin":400,"end":401},"obj":"NNP"},{"id":"T29509","span":{"begin":399,"end":400},"obj":"-LRB-"},{"id":"T29508","span":{"begin":397,"end":398},"obj":"."},{"id":"T29507","span":{"begin":393,"end":397},"obj":"NN"},{"id":"T29506","span":{"begin":385,"end":392},"obj":"JJ"},{"id":"T29505","span":{"begin":381,"end":384},"obj":"IN"},{"id":"T29504","span":{"begin":374,"end":380},"obj":"NNS"},{"id":"T29503","span":{"begin":369,"end":373},"obj":"NN"},{"id":"T29502","span":{"begin":359,"end":368},"obj":"JJ"},{"id":"T29501","span":{"begin":355,"end":358},"obj":"DT"},{"id":"T29500","span":{"begin":352,"end":354},"obj":"IN"},{"id":"T29499","span":{"begin":342,"end":351},"obj":"VBN"},{"id":"T29498","span":{"begin":337,"end":341},"obj":"VBD"},{"id":"T29497","span":{"begin":329,"end":336},"obj":"NNS"},{"id":"T29496","span":{"begin":325,"end":328},"obj":"CC"},{"id":"T29495","span":{"begin":323,"end":324},"obj":"-RRB-"},{"id":"T29494","span":{"begin":322,"end":323},"obj":"NNP"},{"id":"T29493","span":{"begin":320,"end":321},"obj":","},{"id":"T29492","span":{"begin":310,"end":320},"obj":"NNS"},{"id":"T29491","span":{"begin":305,"end":309},"obj":"JJ"},{"id":"T29490","span":{"begin":299,"end":304},"obj":"NN"},{"id":"T29489","span":{"begin":298,"end":299},"obj":"-LRB-"},{"id":"T29488","span":{"begin":294,"end":297},"obj":"NN"},{"id":"T29487","span":{"begin":293,"end":294},"obj":"."},{"id":"T29486","span":{"begin":284,"end":293},"obj":"NNP"},{"id":"T29485","span":{"begin":281,"end":283},"obj":"CC"},{"id":"T29484","span":{"begin":279,"end":280},"obj":"-RRB-"},{"id":"T29483","span":{"begin":278,"end":279},"obj":"NNP"},{"id":"T29482","span":{"begin":277,"end":278},"obj":"-LRB-"},{"id":"T29481","span":{"begin":268,"end":276},"obj":"NNP"},{"id":"T29480","span":{"begin":263,"end":267},"obj":"IN"},{"id":"T29479","span":{"begin":255,"end":262},"obj":"VBN"},{"id":"T29478","span":{"begin":250,"end":254},"obj":"VBD"},{"id":"T29477","span":{"begin":244,"end":249},"obj":"NNS"},{"id":"T29476","span":{"begin":239,"end":243},"obj":"NNP"},{"id":"T29475","span":{"begin":237,"end":238},"obj":"-RRB-"},{"id":"T29474","span":{"begin":236,"end":237},"obj":"NNP"},{"id":"T29473","span":{"begin":235,"end":236},"obj":","},{"id":"T29472","span":{"begin":234,"end":235},"obj":"NNP"},{"id":"T29471","span":{"begin":233,"end":234},"obj":"-LRB-"},{"id":"T29470","span":{"begin":231,"end":232},"obj":"."},{"id":"T29469","span":{"begin":221,"end":231},"obj":"NNS"},{"id":"T29468","span":{"begin":211,"end":220},"obj":"JJ"},{"id":"T29467","span":{"begin":206,"end":210},"obj":"IN"},{"id":"T29466","span":{"begin":197,"end":205},"obj":"VBG"},{"id":"T29465","span":{"begin":189,"end":196},"obj":"JJ"},{"id":"T29464","span":{"begin":186,"end":188},"obj":"IN"},{"id":"T29463","span":{"begin":177,"end":185},"obj":"VBN"},{"id":"T29462","span":{"begin":175,"end":176},"obj":","},{"id":"T29461","span":{"begin":173,"end":175},"obj":"NN"},{"id":"T29460","span":{"begin":171,"end":172},"obj":"CD"},{"id":"T29459","span":{"begin":167,"end":170},"obj":"IN"},{"id":"T29458","span":{"begin":162,"end":166},"obj":"NNP"},{"id":"T29457","span":{"begin":159,"end":161},"obj":"CC"},{"id":"T29456","span":{"begin":150,"end":158},"obj":"NNP"},{"id":"T29455","span":{"begin":145,"end":149},"obj":"IN"},{"id":"T29454","span":{"begin":137,"end":144},"obj":"VBN"},{"id":"T29453","span":{"begin":132,"end":136},"obj":"VBD"},{"id":"T29452","span":{"begin":126,"end":131},"obj":"NNS"},{"id":"T29451","span":{"begin":121,"end":125},"obj":"NNP"},{"id":"T29450","span":{"begin":119,"end":120},"obj":"-RRB-"},{"id":"T29449","span":{"begin":118,"end":119},"obj":"NNP"},{"id":"T29448","span":{"begin":117,"end":118},"obj":"-LRB-"},{"id":"T29447","span":{"begin":115,"end":116},"obj":"."},{"id":"T29446","span":{"begin":104,"end":115},"obj":"NN"},{"id":"T29445","span":{"begin":97,"end":103},"obj":"IN"},{"id":"T29444","span":{"begin":93,"end":96},"obj":"NNP"},{"id":"T29443","span":{"begin":89,"end":92},"obj":"CC"},{"id":"T29442","span":{"begin":85,"end":88},"obj":"NNP"},{"id":"T29441","span":{"begin":82,"end":84},"obj":"IN"},{"id":"T29440","span":{"begin":66,"end":81},"obj":"NN"},{"id":"T29439","span":{"begin":49,"end":65},"obj":"JJ"},{"id":"T29438","span":{"begin":44,"end":48},"obj":"CD"}],"relations":[{"id":"R20361","pred":"nummod","subj":"T29438","obj":"T29440"},{"id":"R20362","pred":"amod","subj":"T29439","obj":"T29440"},{"id":"R20363","pred":"ROOT","subj":"T29440","obj":"T29440"},{"id":"R20364","pred":"prep","subj":"T29441","obj":"T29440"},{"id":"R20365","pred":"pobj","subj":"T29442","obj":"T29441"},{"id":"R20366","pred":"cc","subj":"T29443","obj":"T29442"},{"id":"R20367","pred":"conj","subj":"T29444","obj":"T29442"},{"id":"R20368","pred":"prep","subj":"T29445","obj":"T29440"},{"id":"R20369","pred":"pobj","subj":"T29446","obj":"T29445"},{"id":"R20370","pred":"punct","subj":"T29447","obj":"T29440"},{"id":"R20371","pred":"punct","subj":"T29448","obj":"T29454"},{"id":"R20372","pred":"nmod","subj":"T29449","obj":"T29452"},{"id":"R20373","pred":"punct","subj":"T29450","obj":"T29449"},{"id":"R20374","pred":"compound","subj":"T29451","obj":"T29452"},{"id":"R20375","pred":"nsubjpass","subj":"T29452","obj":"T29454"},{"id":"R20376","pred":"auxpass","subj":"T29453","obj":"T29454"},{"id":"R20377","pred":"ROOT","subj":"T29454","obj":"T29454"},{"id":"R20378","pred":"prep","subj":"T29455","obj":"T29454"},{"id":"R20379","pred":"pobj","subj":"T29456","obj":"T29455"},{"id":"R20380","pred":"cc","subj":"T29457","obj":"T29456"},{"id":"R20381","pred":"conj","subj":"T29458","obj":"T29456"},{"id":"R20382","pred":"prep","subj":"T29459","obj":"T29454"},{"id":"R20383","pred":"nummod","subj":"T29460","obj":"T29461"},{"id":"R20384","pred":"pobj","subj":"T29461","obj":"T29459"},{"id":"R20385","pred":"punct","subj":"T29462","obj":"T29454"},{"id":"R20386","pred":"advcl","subj":"T29463","obj":"T29454"},{"id":"R20387","pred":"agent","subj":"T29464","obj":"T29463"},{"id":"R20388","pred":"amod","subj":"T29465","obj":"T29466"},{"id":"R20389","pred":"pobj","subj":"T29466","obj":"T29464"},{"id":"R20390","pred":"prep","subj":"T29467","obj":"T29466"},{"id":"R20391","pred":"amod","subj":"T29468","obj":"T29469"},{"id":"R20392","pred":"pobj","subj":"T29469","obj":"T29467"},{"id":"R20393","pred":"punct","subj":"T29470","obj":"T29454"},{"id":"R20394","pred":"punct","subj":"T29471","obj":"T29474"},{"id":"R20395","pred":"nmod","subj":"T29472","obj":"T29474"},{"id":"R20396","pred":"punct","subj":"T29473","obj":"T29474"},{"id":"R20397","pred":"ROOT","subj":"T29474","obj":"T29474"},{"id":"R20398","pred":"punct","subj":"T29475","obj":"T29474"},{"id":"R20399","pred":"compound","subj":"T29476","obj":"T29477"},{"id":"R20400","pred":"nsubjpass","subj":"T29477","obj":"T29479"},{"id":"R20401","pred":"auxpass","subj":"T29478","obj":"T29479"},{"id":"R20402","pred":"ROOT","subj":"T29479","obj":"T29479"},{"id":"R20403","pred":"prep","subj":"T29480","obj":"T29479"},{"id":"R20404","pred":"pobj","subj":"T29481","obj":"T29480"},{"id":"R20405","pred":"punct","subj":"T29482","obj":"T29483"},{"id":"R20406","pred":"appos","subj":"T29483","obj":"T29481"},{"id":"R20407","pred":"punct","subj":"T29484","obj":"T29481"},{"id":"R20408","pred":"cc","subj":"T29485","obj":"T29481"},{"id":"R20409","pred":"conj","subj":"T29486","obj":"T29481"},{"id":"R20410","pred":"punct","subj":"T29487","obj":"T29479"},{"id":"R20411","pred":"amod","subj":"T29488","obj":"T29492"},{"id":"R20412","pred":"punct","subj":"T29489","obj":"T29492"},{"id":"R20413","pred":"nmod","subj":"T29490","obj":"T29492"},{"id":"R20414","pred":"amod","subj":"T29491","obj":"T29492"},{"id":"R20415","pred":"nsubjpass","subj":"T29492","obj":"T29499"},{"id":"R20416","pred":"punct","subj":"T29493","obj":"T29492"},{"id":"R20417","pred":"appos","subj":"T29494","obj":"T29492"},{"id":"R20418","pred":"punct","subj":"T29495","obj":"T29494"},{"id":"R20419","pred":"cc","subj":"T29496","obj":"T29492"},{"id":"R20420","pred":"conj","subj":"T29497","obj":"T29492"},{"id":"R20421","pred":"auxpass","subj":"T29498","obj":"T29499"},{"id":"R20422","pred":"ROOT","subj":"T29499","obj":"T29499"},{"id":"R20423","pred":"prep","subj":"T29500","obj":"T29499"},{"id":"R20424","pred":"det","subj":"T29501","obj":"T29503"},{"id":"R20425","pred":"amod","subj":"T29502","obj":"T29503"},{"id":"R20426","pred":"pobj","subj":"T29503","obj":"T29500"},{"id":"R20427","pred":"pobj","subj":"T29504","obj":"T29500"},{"id":"R20428","pred":"prep","subj":"T29505","obj":"T29504"},{"id":"R20429","pred":"amod","subj":"T29506","obj":"T29507"},{"id":"R20430","pred":"pobj","subj":"T29507","obj":"T29505"},{"id":"R20431","pred":"punct","subj":"T29508","obj":"T29499"},{"id":"R20432","pred":"punct","subj":"T29509","obj":"T29514"},{"id":"R20433","pred":"amod","subj":"T29510","obj":"T29512"},{"id":"R20434","pred":"punct","subj":"T29511","obj":"T29512"},{"id":"R20435","pred":"nsubjpass","subj":"T29512","obj":"T29514"},{"id":"R20436","pred":"auxpass","subj":"T29513","obj":"T29514"},{"id":"R20437","pred":"ROOT","subj":"T29514","obj":"T29514"},{"id":"R20438","pred":"prep","subj":"T29515","obj":"T29514"},{"id":"R20439","pred":"det","subj":"T29516","obj":"T29517"},{"id":"R20440","pred":"pobj","subj":"T29517","obj":"T29515"},{"id":"R20441","pred":"acl","subj":"T29518","obj":"T29517"},{"id":"R20442","pred":"prep","subj":"T29519","obj":"T29518"},{"id":"R20443","pred":"pobj","subj":"T29520","obj":"T29519"},{"id":"R20444","pred":"cc","subj":"T29521","obj":"T29520"},{"id":"R20445","pred":"conj","subj":"T29522","obj":"T29520"},{"id":"R20446","pred":"punct","subj":"T29523","obj":"T29526"},{"id":"R20447","pred":"nmod","subj":"T29524","obj":"T29526"},{"id":"R20448","pred":"amod","subj":"T29525","obj":"T29526"},{"id":"R20449","pred":"parataxis","subj":"T29526","obj":"T29522"},{"id":"R20450","pred":"punct","subj":"T29527","obj":"T29526"},{"id":"R20451","pred":"prep","subj":"T29528","obj":"T29518"},{"id":"R20452","pred":"nummod","subj":"T29529","obj":"T29632"},{"id":"R20453","pred":"nmod","subj":"T29530","obj":"T29632"},{"id":"R20454","pred":"cc","subj":"T29531","obj":"T29530"},{"id":"R20551","pred":"nummod","subj":"T29631","obj":"T29530"},{"id":"R20552","pred":"pobj","subj":"T29632","obj":"T29528"},{"id":"R20553","pred":"acl","subj":"T29633","obj":"T29632"},{"id":"R20554","pred":"agent","subj":"T29634","obj":"T29633"},{"id":"R20555","pred":"amod","subj":"T29635","obj":"T29636"},{"id":"R20556","pred":"pobj","subj":"T29636","obj":"T29634"},{"id":"R20557","pred":"prep","subj":"T29637","obj":"T29636"},{"id":"R20558","pred":"det","subj":"T29638","obj":"T29640"},{"id":"R20559","pred":"amod","subj":"T29639","obj":"T29640"},{"id":"R20560","pred":"pobj","subj":"T29640","obj":"T29637"},{"id":"R20561","pred":"punct","subj":"T29641","obj":"T29514"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T29689","span":{"begin":456,"end":465},"obj":"Protein"},{"id":"T29688","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29687","span":{"begin":284,"end":297},"obj":"Protein"},{"id":"T29686","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T29685","span":{"begin":150,"end":158},"obj":"Protein"},{"id":"T29684","span":{"begin":56,"end":65},"obj":"Positive_regulation"},{"id":"T29683","span":{"begin":56,"end":65},"obj":"Positive_regulation"},{"id":"T29682","span":{"begin":66,"end":81},"obj":"Phosphorylation"},{"id":"T29681","span":{"begin":66,"end":81},"obj":"Phosphorylation"},{"id":"T29680","span":{"begin":93,"end":96},"obj":"Protein"},{"id":"T29679","span":{"begin":85,"end":88},"obj":"Protein"},{"id":"T29678","span":{"begin":44,"end":55},"obj":"Protein"}],"relations":[{"id":"R20570","pred":"causeOf","subj":"T29678","obj":"T29683"},{"id":"R20571","pred":"causeOf","subj":"T29678","obj":"T29684"},{"id":"R20572","pred":"themeOf","subj":"T29679","obj":"T29681"},{"id":"R20573","pred":"themeOf","subj":"T29680","obj":"T29682"},{"id":"R20574","pred":"themeOf","subj":"T29681","obj":"T29683"},{"id":"R20575","pred":"themeOf","subj":"T29682","obj":"T29684"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}
test3
{"project":"test3","denotations":[{"id":"T29398","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29397","span":{"begin":284,"end":288},"obj":"Protein"},{"id":"T29396","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T29395","span":{"begin":66,"end":81},"obj":"Phosphorylation"},{"id":"T29394","span":{"begin":44,"end":48},"obj":"Protein"},{"id":"T29393","span":{"begin":456,"end":460},"obj":"Protein"},{"id":"T29392","span":{"begin":448,"end":452},"obj":"Protein"},{"id":"T29391","span":{"begin":284,"end":288},"obj":"Protein"},{"id":"T29390","span":{"begin":162,"end":166},"obj":"Protein"},{"id":"T29389","span":{"begin":44,"end":48},"obj":"Protein"},{"id":"T29399","span":{"begin":456,"end":460},"obj":"Protein"}],"text":"10.1371/journal.pone.0056576.g003 Figure 3 RIP1 kinase-dependent phosphorylation of Akt and JNK during necroptosis.\n(A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies."}