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PMC:340383 / 21196-22119 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T5370 546-556 NN denotes atmosphere
T5369 533-534 DT denotes a
T5368 530-532 IN denotes in
T5367 527-529 NN denotes °C
T5366 525-527 CD denotes 37
T5365 522-524 IN denotes at
T5364 506-510 VBD denotes were
T5363 511-521 VBN denotes maintained
T5362 498-505 NNS denotes neurons
T5361 494-497 DT denotes The
T5360 493-569 sentence denotes The neurons were maintained at 37°C in a humidified atmosphere with 5% CO2.
T5359 492-493 . denotes .
T5358 487-492 RB denotes below
T5357 477-486 VBN denotes described
T5356 474-476 IN denotes as
T5355 465-473 VBN denotes obtained
T5354 445-453 JJ denotes cortical
T5353 454-464 NNS denotes astrocytes
T5352 439-444 NN denotes mouse
T5351 436-438 IN denotes of
T5350 416-425 JJ denotes confluent
T5349 426-435 NN denotes monolayer
T5348 414-415 DT denotes a
T5347 409-413 IN denotes with
T5346 402-408 VBN denotes coated
T5345 391-401 NNS denotes coverslips
T5344 385-390 NN denotes glass
T5343 382-384 IN denotes on
T5342 370-374 VBD denotes were
T5341 375-381 VBN denotes plated
T5340 350-361 JJ denotes hippocampal
T5339 338-349 JJ denotes dissociated
T5338 362-369 NNS denotes neurons
T5337 334-337 DT denotes The
T5336 333-493 sentence denotes The dissociated hippocampal neurons were plated on glass coverslips coated with a confluent monolayer of mouse cortical astrocytes obtained as described below.
T5335 332-333 . denotes .
T5334 331-332 -RRB- denotes )
T5333 314-318 NNP denotes Life
T5332 319-331 NNP denotes Technologies
T5331 313-314 -LRB- denotes (
T5330 305-312 NN denotes trypsin
T5329 303-304 NN denotes %
T5328 299-303 CD denotes 0.25
T5327 294-298 CC denotes plus
T5326 292-293 -RRB- denotes )
T5325 275-279 NNP denotes Life
T5324 280-292 NNP denotes Technologies
T5323 274-275 -LRB- denotes (
T5322 266-273 NN denotes culture
T5321 255-265 NN denotes suspension
T5320 251-254 IN denotes for
T5319 242-250 VBN denotes modified
T5318 240-241 -RRB- denotes )
T5317 224-233 JJ denotes essential
T5316 234-240 NN denotes medium
T5315 216-223 JJ denotes minimum
T5314 215-216 -LRB- denotes (
T5313 211-214 NN denotes MEM
T5312 208-210 IN denotes in
T5311 205-207 NN denotes °C
T5310 203-205 CD denotes 37
T5309 200-202 IN denotes at
T5308 196-199 NN denotes min
T5307 193-195 CD denotes 20
T5306 189-192 IN denotes for
T5305 174-178 RB denotes then
T5304 169-173 VBD denotes were
T5303 179-188 VBN denotes incubated
T5302 161-168 NNS denotes tissues
T5301 157-160 DT denotes The
T5300 156-333 sentence denotes The tissues were then incubated for 20 min at 37°C in MEM (minimum essential medium) modified for suspension culture (Life Technologies) plus 0.25% trypsin (Life Technologies).
T5299 155-156 . denotes .
T5298 150-155 FW denotes utero
T5297 147-149 FW denotes in
T5296 142-146 NNS denotes days
T5295 139-141 CD denotes 16
T5294 136-138 IN denotes at
T5293 128-135 NNS denotes embryos
T5292 122-127 NN denotes mouse
T5291 117-121 IN denotes from
T5290 113-116 RP denotes out
T5289 98-102 VBD denotes were
T5288 84-97 NNS denotes hippocampuses
T5287 80-83 DT denotes the
T5286 78-80 , denotes ,
T5285 73-78 NN denotes brief
T5284 103-112 VBN denotes dissected
T5283 70-72 IN denotes In
T5282 69-156 sentence denotes In brief, the hippocampuses were dissected out from mouse embryos at 16 days in utero.
T5281 68-69 . denotes .
T5280 67-68 -RRB- denotes ]
T5279 66-67 CD denotes 6
T5278 65-66 -LRB- denotes [
T5277 45-55 RB denotes previously
T5276 56-64 VBN denotes reported
T5275 42-44 IN denotes as
T5274 28-32 VBD denotes were
T5273 33-41 VBN denotes prepared
T5272 12-18 NN denotes neuron
T5271 19-27 NNS denotes cultures
T5270 0-11 JJ denotes Hippocampal
T5448 922-923 . denotes .
T5447 912-922 NNS denotes coverslips
T5446 904-911 VBG denotes coating
T5445 900-903 IN denotes for
T5444 890-894 VBD denotes were
T5443 884-889 NNS denotes cells
T5442 880-883 DT denotes the
T5441 878-880 , denotes ,
T5440 872-878 NN denotes debris
T5439 863-871 JJ denotes cellular
T5438 858-862 IN denotes with
T5437 852-857 NNS denotes media
T5436 848-851 DT denotes the
T5435 845-847 IN denotes of
T5434 838-844 NN denotes remove
T5433 895-899 VBN denotes used
T5432 832-837 IN denotes After
T5431 831-923 sentence denotes After remove of the media with cellular debris, the cells were used for coating coverslips.
T5430 830-831 . denotes .
T5429 828-830 NN denotes °C
T5428 826-828 CD denotes 37
T5427 823-825 IN denotes at
T5426 815-816 SYM denotes –
T5425 816-818 CD denotes 24
T5424 813-815 CD denotes 12
T5423 819-822 NNS denotes hrs
T5422 802-812 JJ denotes additional
T5421 798-801 IN denotes for
T5420 789-797 VBN denotes cultured
T5419 785-788 CC denotes and
T5418 783-784 -RRB- denotes )
T5417 778-783 NNP denotes Sigma
T5416 777-778 -LRB- denotes (
T5415 756-764 NN denotes cytosine
T5414 765-776 NN denotes arabinoside
T5413 754-755 NN denotes M
T5412 751-752 SYM denotes -
T5411 752-753 CD denotes 5
T5410 749-751 CD denotes 10
T5409 746-748 IN denotes to
T5408 733-737 VBD denotes were
T5407 738-745 VBN denotes exposed
T5406 727-732 NNS denotes cells
T5405 723-726 DT denotes The
T5404 722-831 sentence denotes The cells were exposed to 10-5 M cytosine arabinoside (Sigma) and cultured for additional 12–24 hrs at 37°C.
T5403 721-722 . denotes .
T5402 712-721 JJ denotes confluent
T5401 706-711 IN denotes until
T5400 702-705 NN denotes CO2
T5399 700-701 NN denotes %
T5398 699-700 CD denotes 5
T5397 694-698 IN denotes with
T5396 672-682 JJ denotes humidified
T5395 683-693 NN denotes atmosphere
T5394 670-671 DT denotes a
T5393 667-669 IN denotes in
T5392 664-666 NN denotes °C
T5391 662-664 CD denotes 37
T5390 659-661 IN denotes at
T5389 652-658 NNS denotes flasks
T5388 644-651 NN denotes culture
T5387 641-643 IN denotes in
T5386 630-634 VBD denotes were
T5385 621-629 NNS denotes cortices
T5384 615-620 NN denotes mouse
T5383 607-614 JJ denotes newborn
T5382 602-606 IN denotes from
T5381 590-601 VBN denotes dissociated
T5380 635-640 VBN denotes grown
T5379 579-589 NNS denotes astrocytes
T5378 570-578 JJ denotes Cortical
T5377 569-722 sentence denotes Cortical astrocytes dissociated from newborn mouse cortices were grown in culture flasks at 37°C in a humidified atmosphere with 5% CO2 until confluent.
T5376 568-569 . denotes .
T5375 565-568 NN denotes CO2
T5374 563-564 NN denotes %
T5373 562-563 CD denotes 5
T5372 557-561 IN denotes with
T5371 535-545 JJ denotes humidified
R3145 T5270 T5271 amod Hippocampal,cultures
R3146 T5271 T5273 nsubjpass cultures,prepared
R3147 T5272 T5271 compound neuron,cultures
R3148 T5274 T5273 auxpass were,prepared
R3149 T5275 T5276 mark as,reported
R3150 T5276 T5273 advcl reported,prepared
R3151 T5277 T5276 advmod previously,reported
R3152 T5278 T5279 punct [,6
R3153 T5279 T5273 parataxis 6,prepared
R3154 T5280 T5279 punct ],6
R3155 T5281 T5273 punct .,prepared
R3156 T5283 T5284 prep In,dissected
R3157 T5285 T5283 pobj brief,In
R3158 T5286 T5284 punct ", ",dissected
R3159 T5287 T5288 det the,hippocampuses
R3160 T5288 T5284 nsubjpass hippocampuses,dissected
R3161 T5289 T5284 auxpass were,dissected
R3162 T5290 T5284 prt out,dissected
R3163 T5291 T5284 prep from,dissected
R3164 T5292 T5293 compound mouse,embryos
R3165 T5293 T5291 pobj embryos,from
R3166 T5294 T5284 prep at,dissected
R3167 T5295 T5296 nummod 16,days
R3168 T5296 T5294 pobj days,at
R3169 T5297 T5298 advmod in,utero
R3170 T5298 T5296 advmod utero,days
R3171 T5299 T5284 punct .,dissected
R3172 T5301 T5302 det The,tissues
R3173 T5302 T5303 nsubjpass tissues,incubated
R3174 T5304 T5303 auxpass were,incubated
R3175 T5305 T5303 advmod then,incubated
R3176 T5306 T5303 prep for,incubated
R3177 T5307 T5308 nummod 20,min
R3178 T5308 T5306 pobj min,for
R3179 T5309 T5303 prep at,incubated
R3180 T5310 T5311 nummod 37,°C
R3181 T5311 T5309 pobj °C,at
R3182 T5312 T5303 prep in,incubated
R3183 T5313 T5312 pobj MEM,in
R3184 T5314 T5313 punct (,MEM
R3185 T5315 T5316 amod minimum,medium
R3186 T5316 T5313 appos medium,MEM
R3187 T5317 T5316 amod essential,medium
R3188 T5318 T5313 punct ),MEM
R3189 T5319 T5313 acl modified,MEM
R3190 T5320 T5319 prep for,modified
R3191 T5321 T5322 compound suspension,culture
R3192 T5322 T5320 pobj culture,for
R3193 T5323 T5324 punct (,Technologies
R3194 T5324 T5313 parataxis Technologies,MEM
R3195 T5325 T5324 compound Life,Technologies
R3196 T5326 T5324 punct ),Technologies
R3197 T5327 T5313 cc plus,MEM
R3198 T5328 T5329 nummod 0.25,%
R3199 T5329 T5330 compound %,trypsin
R3200 T5330 T5313 conj trypsin,MEM
R3201 T5331 T5332 punct (,Technologies
R3202 T5332 T5330 parataxis Technologies,trypsin
R3203 T5333 T5332 compound Life,Technologies
R3204 T5334 T5332 punct ),Technologies
R3205 T5335 T5303 punct .,incubated
R3206 T5337 T5338 det The,neurons
R3207 T5338 T5341 nsubjpass neurons,plated
R3208 T5339 T5338 amod dissociated,neurons
R3209 T5340 T5338 amod hippocampal,neurons
R3210 T5342 T5341 auxpass were,plated
R3211 T5343 T5341 prep on,plated
R3212 T5344 T5345 compound glass,coverslips
R3213 T5345 T5343 pobj coverslips,on
R3214 T5346 T5345 acl coated,coverslips
R3215 T5347 T5346 prep with,coated
R3216 T5348 T5349 det a,monolayer
R3217 T5349 T5347 pobj monolayer,with
R3218 T5350 T5349 amod confluent,monolayer
R3219 T5351 T5349 prep of,monolayer
R3220 T5352 T5353 nmod mouse,astrocytes
R3221 T5353 T5351 pobj astrocytes,of
R3222 T5354 T5353 amod cortical,astrocytes
R3223 T5355 T5353 acl obtained,astrocytes
R3224 T5356 T5357 mark as,described
R3225 T5357 T5355 advcl described,obtained
R3226 T5358 T5357 advmod below,described
R3227 T5359 T5341 punct .,plated
R3228 T5361 T5362 det The,neurons
R3229 T5362 T5363 nsubjpass neurons,maintained
R3230 T5364 T5363 auxpass were,maintained
R3231 T5365 T5363 prep at,maintained
R3232 T5366 T5367 nummod 37,°C
R3233 T5367 T5365 pobj °C,at
R3234 T5368 T5363 prep in,maintained
R3235 T5369 T5370 det a,atmosphere
R3236 T5370 T5368 pobj atmosphere,in
R3237 T5371 T5370 amod humidified,atmosphere
R3238 T5372 T5370 prep with,atmosphere
R3239 T5373 T5374 nummod 5,%
R3240 T5374 T5375 compound %,CO2
R3241 T5375 T5372 pobj CO2,with
R3242 T5376 T5363 punct .,maintained
R3243 T5378 T5379 amod Cortical,astrocytes
R3244 T5379 T5380 nsubjpass astrocytes,grown
R3245 T5381 T5379 acl dissociated,astrocytes
R3246 T5382 T5381 prep from,dissociated
R3247 T5383 T5384 amod newborn,mouse
R3248 T5384 T5385 compound mouse,cortices
R3249 T5385 T5382 pobj cortices,from
R3250 T5386 T5380 auxpass were,grown
R3251 T5387 T5380 prep in,grown
R3252 T5388 T5389 compound culture,flasks
R3253 T5389 T5387 pobj flasks,in
R3254 T5390 T5380 prep at,grown
R3255 T5391 T5392 nummod 37,°C
R3256 T5392 T5390 pobj °C,at
R3257 T5393 T5380 prep in,grown
R3258 T5394 T5395 det a,atmosphere
R3259 T5395 T5393 pobj atmosphere,in
R3260 T5396 T5395 amod humidified,atmosphere
R3261 T5397 T5395 prep with,atmosphere
R3262 T5398 T5399 nummod 5,%
R3263 T5399 T5400 compound %,CO2
R3264 T5400 T5397 pobj CO2,with
R3265 T5401 T5380 prep until,grown
R3266 T5402 T5401 pcomp confluent,until
R3267 T5403 T5380 punct .,grown
R3268 T5405 T5406 det The,cells
R3269 T5406 T5407 nsubjpass cells,exposed
R3270 T5408 T5407 auxpass were,exposed
R3271 T5409 T5407 prep to,exposed
R3272 T5410 T5411 quantmod 10,5
R3273 T5411 T5413 nummod 5,M
R3274 T5412 T5411 punct -,5
R3275 T5413 T5414 compound M,arabinoside
R3276 T5414 T5409 pobj arabinoside,to
R3277 T5415 T5414 compound cytosine,arabinoside
R3278 T5416 T5417 punct (,Sigma
R3279 T5417 T5414 parataxis Sigma,arabinoside
R3280 T5418 T5417 punct ),Sigma
R3281 T5419 T5407 cc and,exposed
R3282 T5420 T5407 conj cultured,exposed
R3283 T5421 T5420 prep for,cultured
R3284 T5422 T5423 amod additional,hrs
R3285 T5423 T5421 pobj hrs,for
R3286 T5424 T5425 quantmod 12,24
R3287 T5425 T5423 nummod 24,hrs
R3288 T5426 T5425 punct –,24
R3289 T5427 T5420 prep at,cultured
R3290 T5428 T5429 nummod 37,°C
R3291 T5429 T5427 pobj °C,at
R3292 T5430 T5407 punct .,exposed
R3293 T5432 T5433 prep After,used
R3294 T5434 T5432 pobj remove,After
R3295 T5435 T5434 prep of,remove
R3296 T5436 T5437 det the,media
R3297 T5437 T5435 pobj media,of
R3298 T5438 T5434 prep with,remove
R3299 T5439 T5440 amod cellular,debris
R3300 T5440 T5438 pobj debris,with
R3301 T5441 T5433 punct ", ",used
R3302 T5442 T5443 det the,cells
R3303 T5443 T5433 nsubjpass cells,used
R3304 T5444 T5433 auxpass were,used
R3305 T5445 T5433 prep for,used
R3306 T5446 T5445 pcomp coating,for
R3307 T5447 T5446 dobj coverslips,coating
R3308 T5448 T5433 punct .,used

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5189 756-776 CHEBI:28680 denotes cytosine arabinoside
T5188 702-705 CHEBI:16526 denotes CO2
T5187 635-640 GO:0040007 denotes grown
T5186 621-629 UBERON:0001851 denotes cortices
T5185 615-620 NCBITaxon:10088 denotes mouse
T5184 570-589 CL:0002605 denotes Cortical astrocytes
T5183 570-578 UBERON:0001851 denotes Cortical
T5182 565-568 CHEBI:16526 denotes CO2
T5181 498-505 CL:0000540 denotes neurons
T5180 445-464 CL:0002605 denotes cortical astrocytes
T5179 445-453 UBERON:0001851 denotes cortical
T5178 439-444 NCBITaxon:10088 denotes mouse
T5177 350-369 CL:0002608 denotes hippocampal neurons
T5176 305-312 PR:000027795 denotes trypsin
T5175 161-168 UBERON:0000479 denotes tissues
T5174 128-135 UBERON:0000922 denotes embryos
T5173 122-127 NCBITaxon:10088 denotes mouse
T5172 0-18 CL:0002608 denotes Hippocampal neuron

2_test

Id Subject Object Predicate Lexical cue
14723793-8657283-10642200 66-67 8657283 denotes 6

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5234 884-889 CL_GO_EXT:cell denotes cells
T5233 863-871 CL_GO_EXT:cell denotes cellular
T5232 756-776 CHEBI:28680 denotes cytosine arabinoside
T5231 727-732 CL_GO_EXT:cell denotes cells
T5230 702-705 CHEBI:16526 denotes CO2
T5229 635-640 GO:0040007 denotes grown
T5228 621-629 UBERON:0001851 denotes cortices
T5227 615-620 NCBITaxon:10088 denotes mouse
T5226 607-614 PATO_UBERON_EXT:neonate_or_newborn denotes newborn
T5225 570-589 CL:0002605 denotes Cortical astrocytes
T5224 570-578 UBERON:0001851 denotes Cortical
T5223 565-568 CHEBI:16526 denotes CO2
T5222 498-505 CL:0000540 denotes neurons
T5221 445-464 CL:0002605 denotes cortical astrocytes
T5220 445-453 UBERON:0001851 denotes cortical
T5219 439-444 NCBITaxon:10088 denotes mouse
T5218 350-369 CL:0002608 denotes hippocampal neurons
T5217 350-361 UBERON_EXT:hippocampus_proper_or_hippocampal_formation denotes hippocampal
T5216 305-312 PR_EXT:000027795 denotes trypsin
T5215 161-168 UBERON:0000479 denotes tissues
T5214 128-135 UBERON:0000922 denotes embryos
T5213 122-127 NCBITaxon:10088 denotes mouse
T5212 84-97 UBERON_EXT:hippocampus_proper_or_hippocampal_formation denotes hippocampuses
T5211 0-18 CL:0002608 denotes Hippocampal neuron
T5210 0-11 UBERON_EXT:hippocampus_proper_or_hippocampal_formation denotes Hippocampal