PMC:3395577 / 13783-14917 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/3395577","sourcedb":"PMC","sourceid":"3395577","source_url":"http://www.ncbi.nlm.nih.gov/pmc/3395577","text":"Phylogenies analysis of BGL\nTo gain insights into the evolutionary relationship among β-glucosidases, we constructed the phylogenetic trees of 40 candidate sequences using he NJ method and the MP method respectively, both supporting almost the same topology. The results revealed the presences of five well-supported clades: Clade II was GH1 β-glucosidases from fungi, and Clade III was the GH3 β-glucosidases from bacteria, and Clade IV was the GH3 β-glucosidases from fungi. The GH1 β-glucosidases from bacteria was divided into two clades: Clade I mainly contained mesophilic bacteria; Clade V mainly contained thermophile, which is formed by further divided into two subclades, of which one contains all thermophile, and the other Bacillus GH1 β-glucosidases. Clade II and clade III had a relatively close relationship, and the GH1 β-glucosidases from thermophile were distant from the other clades (Figure 7).\nFigure 7 The Neighbor-Joining (NJ) and Maximum-Parsimony (MP) trees results from analysis of β-glucosidases of 40 amino acid sequences. Numbers on nodes correspond to percentage bootstrap values for 1000 replicates.\n\nD","divisions":[{"label":"Title","span":{"begin":0,"end":27}},{"label":"Figure caption","span":{"begin":915,"end":1133}}],"tracks":[{"project":"MicrobeTaxon","denotations":[{"id":"T27","span":{"begin":362,"end":367},"obj":"4751"},{"id":"T28","span":{"begin":470,"end":475},"obj":"4751"},{"id":"T29","span":{"begin":415,"end":423},"obj":"2"},{"id":"T30","span":{"begin":505,"end":513},"obj":"2"},{"id":"T31","span":{"begin":579,"end":587},"obj":"2"},{"id":"T32","span":{"begin":735,"end":743},"obj":"1386"}],"namespaces":[{"prefix":"_base","uri":"http://purl.bioontology.org/ontology/NCBITAXON/"}],"attributes":[{"subj":"T27","pred":"source","obj":"MicrobeTaxon"},{"subj":"T28","pred":"source","obj":"MicrobeTaxon"},{"subj":"T29","pred":"source","obj":"MicrobeTaxon"},{"subj":"T30","pred":"source","obj":"MicrobeTaxon"},{"subj":"T31","pred":"source","obj":"MicrobeTaxon"},{"subj":"T32","pred":"source","obj":"MicrobeTaxon"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"MicrobeTaxon","color":"#a993ec","default":true}]}]}}