PMC:3359311 / 653-1502 JSONTXT

Annnotations TAB JSON ListView MergeView

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T369","span":{"begin":104,"end":109},"obj":"P01584"},{"id":"T370","span":{"begin":358,"end":363},"obj":"P01584"},{"id":"T371","span":{"begin":528,"end":533},"obj":"P01584"},{"id":"T372","span":{"begin":596,"end":601},"obj":"P01584"},{"id":"T373","span":{"begin":795,"end":800},"obj":"P01584"},{"id":"T374","span":{"begin":804,"end":808},"obj":"P10145"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Results\nBronchial epithelial cell lines were found to produce negligible amounts of basal or stimulated IL-1β compared to hematopoeitic cells and they did not significantly upregulate caspase-1 activity upon inflammasome stimulation. In contrast, peripheral blood mononuclear cells (PBMCs) from both CF and healthy control subjects produced large amounts of IL-1β and strongly upregulated caspase-1 activity upon inflammasome stimulation. PBMCs from CF patients and controls displayed similar levels of caspase-1 activation and IL-1β production when stimulated with inflammasome activators. This IL-1β production was dependent on NF-κB activity and could be enhanced by priming with LPS. Finally, chemical inhibition of CFTR activity in control PBMCs and THP-1 cells did not significantly alter IL-1β or IL-8 production in response to P. aeruginosa."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T49","span":{"begin":54,"end":61},"obj":"Gene_expression"},{"id":"T50","span":{"begin":93,"end":103},"obj":"Positive_regulation"},{"id":"T51","span":{"begin":104,"end":109},"obj":"Protein"},{"id":"T52","span":{"begin":332,"end":340},"obj":"Gene_expression"},{"id":"T53","span":{"begin":358,"end":363},"obj":"Protein"},{"id":"T54","span":{"begin":408,"end":412},"obj":"Positive_regulation"},{"id":"T55","span":{"begin":528,"end":533},"obj":"Protein"},{"id":"T56","span":{"begin":534,"end":544},"obj":"Gene_expression"},{"id":"T57","span":{"begin":550,"end":560},"obj":"Positive_regulation"},{"id":"T58","span":{"begin":596,"end":601},"obj":"Protein"},{"id":"T59","span":{"begin":789,"end":794},"obj":"Regulation"},{"id":"T60","span":{"begin":795,"end":800},"obj":"Protein"},{"id":"T61","span":{"begin":809,"end":819},"obj":"Gene_expression"},{"id":"T62","span":{"begin":820,"end":834},"obj":"Positive_regulation"}],"relations":[{"id":"R30","pred":"themeOf","subj":"T49","obj":"T50"},{"id":"R31","pred":"themeOf","subj":"T51","obj":"T49"},{"id":"R32","pred":"themeOf","subj":"T52","obj":"T54"},{"id":"R33","pred":"themeOf","subj":"T53","obj":"T52"},{"id":"R34","pred":"themeOf","subj":"T55","obj":"T56"},{"id":"R35","pred":"themeOf","subj":"T56","obj":"T57"},{"id":"R36","pred":"themeOf","subj":"T60","obj":"T61"},{"id":"R37","pred":"themeOf","subj":"T61","obj":"T62"},{"id":"R38","pred":"themeOf","subj":"T62","obj":"T59"}],"attributes":[{"id":"M6","pred":"Negation","subj":"T49","obj":"true"},{"id":"M7","pred":"Negation","subj":"T59","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Results\nBronchial epithelial cell lines were found to produce negligible amounts of basal or stimulated IL-1β compared to hematopoeitic cells and they did not significantly upregulate caspase-1 activity upon inflammasome stimulation. In contrast, peripheral blood mononuclear cells (PBMCs) from both CF and healthy control subjects produced large amounts of IL-1β and strongly upregulated caspase-1 activity upon inflammasome stimulation. PBMCs from CF patients and controls displayed similar levels of caspase-1 activation and IL-1β production when stimulated with inflammasome activators. This IL-1β production was dependent on NF-κB activity and could be enhanced by priming with LPS. Finally, chemical inhibition of CFTR activity in control PBMCs and THP-1 cells did not significantly alter IL-1β or IL-8 production in response to P. aeruginosa."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T809","span":{"begin":104,"end":109},"obj":"Protein"},{"id":"T810","span":{"begin":184,"end":193},"obj":"Protein"},{"id":"T811","span":{"begin":54,"end":61},"obj":"Gene_expression"},{"id":"T812","span":{"begin":173,"end":183},"obj":"Positive_regulation"},{"id":"T813","span":{"begin":358,"end":363},"obj":"Protein"},{"id":"T814","span":{"begin":389,"end":398},"obj":"Protein"},{"id":"T815","span":{"begin":332,"end":340},"obj":"Gene_expression"},{"id":"T816","span":{"begin":377,"end":388},"obj":"Positive_regulation"},{"id":"T817","span":{"begin":347,"end":354},"obj":"Positive_regulation"},{"id":"T818","span":{"begin":503,"end":512},"obj":"Protein"},{"id":"T819","span":{"begin":528,"end":533},"obj":"Protein"},{"id":"T820","span":{"begin":513,"end":523},"obj":"Positive_regulation"},{"id":"T821","span":{"begin":534,"end":544},"obj":"Gene_expression"},{"id":"T822","span":{"begin":513,"end":523},"obj":"Positive_regulation"},{"id":"T823","span":{"begin":596,"end":601},"obj":"Protein"},{"id":"T824","span":{"begin":630,"end":635},"obj":"Protein"},{"id":"T825","span":{"begin":602,"end":612},"obj":"Gene_expression"},{"id":"T826","span":{"begin":617,"end":626},"obj":"Positive_regulation"},{"id":"T827","span":{"begin":658,"end":666},"obj":"Positive_regulation"},{"id":"T828","span":{"begin":720,"end":724},"obj":"Protein"},{"id":"T829","span":{"begin":795,"end":800},"obj":"Protein"},{"id":"T830","span":{"begin":804,"end":808},"obj":"Protein"},{"id":"T831","span":{"begin":706,"end":716},"obj":"Negative_regulation"},{"id":"T832","span":{"begin":809,"end":819},"obj":"Gene_expression"},{"id":"T833","span":{"begin":809,"end":819},"obj":"Gene_expression"},{"id":"T834","span":{"begin":789,"end":794},"obj":"Positive_regulation"},{"id":"T835","span":{"begin":789,"end":794},"obj":"Positive_regulation"}],"relations":[{"id":"R670","pred":"themeOf","subj":"T809","obj":"T811"},{"id":"R671","pred":"themeOf","subj":"T810","obj":"T812"},{"id":"R672","pred":"themeOf","subj":"T813","obj":"T815"},{"id":"R673","pred":"themeOf","subj":"T814","obj":"T816"},{"id":"R674","pred":"themeOf","subj":"T816","obj":"T817"},{"id":"R675","pred":"themeOf","subj":"T818","obj":"T820"},{"id":"R676","pred":"themeOf","subj":"T819","obj":"T821"},{"id":"R677","pred":"themeOf","subj":"T821","obj":"T822"},{"id":"R678","pred":"themeOf","subj":"T823","obj":"T825"},{"id":"R679","pred":"themeOf","subj":"T825","obj":"T826"},{"id":"R680","pred":"themeOf","subj":"T825","obj":"T827"},{"id":"R681","pred":"themeOf","subj":"T828","obj":"T831"},{"id":"R682","pred":"themeOf","subj":"T829","obj":"T832"},{"id":"R683","pred":"themeOf","subj":"T830","obj":"T833"},{"id":"R684","pred":"themeOf","subj":"T832","obj":"T834"},{"id":"R685","pred":"themeOf","subj":"T833","obj":"T835"}],"text":"Results\nBronchial epithelial cell lines were found to produce negligible amounts of basal or stimulated IL-1β compared to hematopoeitic cells and they did not significantly upregulate caspase-1 activity upon inflammasome stimulation. In contrast, peripheral blood mononuclear cells (PBMCs) from both CF and healthy control subjects produced large amounts of IL-1β and strongly upregulated caspase-1 activity upon inflammasome stimulation. PBMCs from CF patients and controls displayed similar levels of caspase-1 activation and IL-1β production when stimulated with inflammasome activators. This IL-1β production was dependent on NF-κB activity and could be enhanced by priming with LPS. Finally, chemical inhibition of CFTR activity in control PBMCs and THP-1 cells did not significantly alter IL-1β or IL-8 production in response to P. aeruginosa."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T779","span":{"begin":54,"end":61},"obj":"Gene_expression"},{"id":"T780","span":{"begin":93,"end":103},"obj":"Positive_regulation"},{"id":"T781","span":{"begin":104,"end":109},"obj":"Protein"},{"id":"T782","span":{"begin":332,"end":340},"obj":"Gene_expression"},{"id":"T783","span":{"begin":358,"end":363},"obj":"Protein"},{"id":"T784","span":{"begin":408,"end":412},"obj":"Positive_regulation"},{"id":"T785","span":{"begin":528,"end":533},"obj":"Protein"},{"id":"T786","span":{"begin":534,"end":544},"obj":"Gene_expression"},{"id":"T787","span":{"begin":550,"end":560},"obj":"Positive_regulation"},{"id":"T788","span":{"begin":596,"end":601},"obj":"Protein"},{"id":"T789","span":{"begin":789,"end":794},"obj":"Regulation"},{"id":"T790","span":{"begin":795,"end":800},"obj":"Protein"},{"id":"T791","span":{"begin":809,"end":819},"obj":"Gene_expression"},{"id":"T792","span":{"begin":820,"end":834},"obj":"Positive_regulation"}],"relations":[{"id":"R652","pred":"themeOf","subj":"T779","obj":"T780"},{"id":"R653","pred":"themeOf","subj":"T781","obj":"T779"},{"id":"R654","pred":"themeOf","subj":"T782","obj":"T784"},{"id":"R655","pred":"themeOf","subj":"T783","obj":"T782"},{"id":"R656","pred":"themeOf","subj":"T785","obj":"T786"},{"id":"R657","pred":"themeOf","subj":"T786","obj":"T787"},{"id":"R658","pred":"themeOf","subj":"T790","obj":"T791"},{"id":"R659","pred":"themeOf","subj":"T791","obj":"T792"},{"id":"R660","pred":"themeOf","subj":"T792","obj":"T789"}],"attributes":[{"id":"M19","pred":"Negation","subj":"T789","obj":"true"},{"id":"M18","pred":"Negation","subj":"T779","obj":"true"}],"text":"Results\nBronchial epithelial cell lines were found to produce negligible amounts of basal or stimulated IL-1β compared to hematopoeitic cells and they did not significantly upregulate caspase-1 activity upon inflammasome stimulation. In contrast, peripheral blood mononuclear cells (PBMCs) from both CF and healthy control subjects produced large amounts of IL-1β and strongly upregulated caspase-1 activity upon inflammasome stimulation. PBMCs from CF patients and controls displayed similar levels of caspase-1 activation and IL-1β production when stimulated with inflammasome activators. This IL-1β production was dependent on NF-κB activity and could be enhanced by priming with LPS. Finally, chemical inhibition of CFTR activity in control PBMCs and THP-1 cells did not significantly alter IL-1β or IL-8 production in response to P. aeruginosa."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T689","span":{"begin":29,"end":33},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T690","span":{"begin":136,"end":141},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T691","span":{"begin":276,"end":281},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T692","span":{"begin":761,"end":766},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Results\nBronchial epithelial cell lines were found to produce negligible amounts of basal or stimulated IL-1β compared to hematopoeitic cells and they did not significantly upregulate caspase-1 activity upon inflammasome stimulation. In contrast, peripheral blood mononuclear cells (PBMCs) from both CF and healthy control subjects produced large amounts of IL-1β and strongly upregulated caspase-1 activity upon inflammasome stimulation. PBMCs from CF patients and controls displayed similar levels of caspase-1 activation and IL-1β production when stimulated with inflammasome activators. This IL-1β production was dependent on NF-κB activity and could be enhanced by priming with LPS. Finally, chemical inhibition of CFTR activity in control PBMCs and THP-1 cells did not significantly alter IL-1β or IL-8 production in response to P. aeruginosa."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T696","span":{"begin":804,"end":808},"obj":"http://purl.obolibrary.org/obo/GO_0005153"}],"text":"Results\nBronchial epithelial cell lines were found to produce negligible amounts of basal or stimulated IL-1β compared to hematopoeitic cells and they did not significantly upregulate caspase-1 activity upon inflammasome stimulation. In contrast, peripheral blood mononuclear cells (PBMCs) from both CF and healthy control subjects produced large amounts of IL-1β and strongly upregulated caspase-1 activity upon inflammasome stimulation. PBMCs from CF patients and controls displayed similar levels of caspase-1 activation and IL-1β production when stimulated with inflammasome activators. This IL-1β production was dependent on NF-κB activity and could be enhanced by priming with LPS. Finally, chemical inhibition of CFTR activity in control PBMCs and THP-1 cells did not significantly alter IL-1β or IL-8 production in response to P. aeruginosa."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T686","span":{"begin":804,"end":819},"obj":"http://purl.obolibrary.org/obo/GO_0032677"},{"id":"T687","span":{"begin":804,"end":819},"obj":"http://purl.obolibrary.org/obo/GO_0032637"}],"text":"Results\nBronchial epithelial cell lines were found to produce negligible amounts of basal or stimulated IL-1β compared to hematopoeitic cells and they did not significantly upregulate caspase-1 activity upon inflammasome stimulation. In contrast, peripheral blood mononuclear cells (PBMCs) from both CF and healthy control subjects produced large amounts of IL-1β and strongly upregulated caspase-1 activity upon inflammasome stimulation. PBMCs from CF patients and controls displayed similar levels of caspase-1 activation and IL-1β production when stimulated with inflammasome activators. This IL-1β production was dependent on NF-κB activity and could be enhanced by priming with LPS. Finally, chemical inhibition of CFTR activity in control PBMCs and THP-1 cells did not significantly alter IL-1β or IL-8 production in response to P. aeruginosa."}

    UBERON-AE

    {"project":"UBERON-AE","denotations":[{"id":"T36","span":{"begin":258,"end":263},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"text":"Results\nBronchial epithelial cell lines were found to produce negligible amounts of basal or stimulated IL-1β compared to hematopoeitic cells and they did not significantly upregulate caspase-1 activity upon inflammasome stimulation. In contrast, peripheral blood mononuclear cells (PBMCs) from both CF and healthy control subjects produced large amounts of IL-1β and strongly upregulated caspase-1 activity upon inflammasome stimulation. PBMCs from CF patients and controls displayed similar levels of caspase-1 activation and IL-1β production when stimulated with inflammasome activators. This IL-1β production was dependent on NF-κB activity and could be enhanced by priming with LPS. Finally, chemical inhibition of CFTR activity in control PBMCs and THP-1 cells did not significantly alter IL-1β or IL-8 production in response to P. aeruginosa."}

    bionlp-st-ge-2016-spacy-parsed

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