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PMC:3342329 / 8495-8661 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T4490 118-122 Protein denotes CCR5
T4489 83-87 Protein denotes CCR5
T4468 118-122 Protein denotes CCR5
T4467 83-87 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T4448 118-122 Protein denotes CCR5
T4447 83-87 Protein denotes CCR5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T5211 118-122 Protein denotes CCR5
T5210 83-87 Protein denotes CCR5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T5130 118-122 Protein denotes CCR5
T5129 83-87 Protein denotes CCR5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4844 97-100 CC denotes but
T4843 95-96 -COMMA- denotes ,
T4842 91-95 NN denotes mice
T4841 83-90 NN denotes CCR5−/−
T4840 79-82 DT denotes the
T4839 76-78 IN denotes of
T4838 68-75 NN denotes tissues
T4837 62-67 NN denotes tumor
T4836 58-61 DT denotes the
T4835 53-57 IN denotes that
T4834 43-52 VB denotes indicated
T4833 34-42 NN denotes staining
T4832 32-33 NN denotes E
T4831 31-32 CC denotes &
T4830 30-31 NN denotes H
T4829 24-29 IN denotes after
T4828 15-23 NN denotes findings
T4827 4-14 JJ denotes histologic
T4826 0-3 DT denotes The
T4856 157-165 NN denotes necrosis
T4855 154-156 IN denotes of
T4854 148-153 NN denotes areas
T4853 142-147 JJ denotes large
T4852 132-141 VB denotes contained
T4851 130-131 -COMMA- denotes ,
T4850 126-130 NN denotes mice
T4849 118-125 JJ denotes CCR5+/+
T4848 114-117 DT denotes the
T4847 111-113 IN denotes of
T4846 105-110 DT denotes those
T4845 101-104 RB denotes not
R3292 T4828 T4826 arg1Of findings,The
R3293 T4828 T4827 arg1Of findings,histologic
R3294 T4828 T4829 arg1Of findings,after
R3295 T4828 T4834 arg1Of findings,indicated
R3296 T4833 T4829 arg2Of staining,after
R3297 T4833 T4830 arg1Of staining,H
R3298 T4833 T4831 arg1Of staining,&
R3299 T4833 T4832 arg1Of staining,E
R3300 T4838 T4836 arg1Of tissues,the
R3301 T4838 T4837 arg1Of tissues,tumor
R3302 T4838 T4839 arg1Of tissues,of
R3303 T4838 T4844 arg1Of tissues,but
R3304 T4842 T4839 arg2Of mice,of
R3305 T4842 T4840 arg1Of mice,the
R3306 T4842 T4841 arg1Of mice,CCR5−/−
R3307 T4844 T4843 arg1Of but,","
R3308 T4844 T4845 arg1Of but,not
R3309 T4844 T4852 arg1Of but,contained
R3310 T4846 T4844 arg2Of those,but
R3311 T4846 T4847 arg1Of those,of
R3312 T4850 T4847 arg2Of mice,of
R3313 T4850 T4848 arg1Of mice,the
R3314 T4850 T4849 arg1Of mice,CCR5+/+
R3315 T4852 T4834 arg2Of contained,indicated
R3316 T4852 T4835 arg1Of contained,that
R3317 T4852 T4851 arg1Of contained,","
R3318 T4854 T4852 arg2Of areas,contained
R3319 T4854 T4853 arg1Of areas,large
R3320 T4854 T4855 arg1Of areas,of
R3321 T4856 T4855 arg2Of necrosis,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T4545 118-122 Protein denotes CCR5
T4544 83-87 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5150 118-122 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T5149 83-87 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T4492 68-75 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

GO-BP

Id Subject Object Predicate Lexical cue
T4558 157-165 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T4557 157-165 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T4556 157-165 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T4555 157-165 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis

sentences

Id Subject Object Predicate Lexical cue
T4505 0-166 Sentence denotes The histologic findings after H&E staining indicated that the tumor tissues of the CCR5−/− mice, but not those of the CCR5+/+ mice, contained large areas of necrosis.
T63 0-166 Sentence denotes The histologic findings after H&E staining indicated that the tumor tissues of the CCR5−/− mice, but not those of the CCR5+/+ mice, contained large areas of necrosis.

simple1

Id Subject Object Predicate Lexical cue
T4599 118-122 Protein denotes CCR5
T4598 83-87 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T5170 118-122 Protein denotes CCR5
T5169 83-87 Protein denotes CCR5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5350 126-131 Protein denotes mice,
T5328 76-125 Protein denotes of the CCR5−/− mice, but not those of the CCR5+/+

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5093 165-166 . denotes .
T5092 157-165 NN denotes necrosis
T5091 154-156 IN denotes of
T5090 148-153 NNS denotes areas
T5089 142-147 JJ denotes large
T5088 132-141 VBD denotes contained
T5087 130-131 , denotes ,
T5086 126-130 NNS denotes mice
T5085 124-125 CD denotes +
T5084 123-124 VBD denotes /
T5083 122-123 NNP denotes +
T5082 118-122 NNP denotes CCR5
T5081 114-117 DT denotes the
T5080 111-113 IN denotes of
T5079 105-110 DT denotes those
T5078 101-104 RB denotes not
T5077 97-100 CC denotes but
T5076 95-96 , denotes ,
T5075 91-95 NNS denotes mice
T5074 89-90 CD denotes −
T5073 88-89 VBD denotes /
T5072 87-88 NNP denotes −
T5071 83-87 NNP denotes CCR5
T5070 79-82 DT denotes the
T5069 76-78 IN denotes of
T5068 68-75 NNS denotes tissues
T5067 62-67 NN denotes tumor
T5066 58-61 DT denotes the
T5065 53-57 IN denotes that
T5064 43-52 VBD denotes indicated
T5063 34-42 VBG denotes staining
T5062 30-33 NNP denotes H&E
T5061 24-29 IN denotes after
T5060 15-23 NNS denotes findings
T5059 4-14 JJ denotes histologic
T5058 0-3 DT denotes The
R3523 T5058 T5060 det The,findings
R3524 T5059 T5060 amod histologic,findings
R3525 T5060 T5064 nsubj findings,indicated
R3526 T5061 T5064 mark after,indicated
R3527 T5062 T5064 nsubj H&E,indicated
R3528 T5063 T5064 auxpass staining,indicated
R3529 T5064 T5064 ROOT indicated,indicated
R3530 T5065 T5073 mark that,/
R3531 T5066 T5068 det the,tissues
R3532 T5067 T5068 compound tumor,tissues
R3533 T5068 T5073 nsubj tissues,/
R3534 T5069 T5068 prep of,tissues
R3535 T5070 T5072 det the,−
R3536 T5071 T5072 compound CCR5,−
R3537 T5072 T5069 pobj −,of
R3538 T5073 T5064 ccomp /,indicated
R3539 T5074 T5075 nummod −,mice
R3540 T5075 T5073 dobj mice,/
R3541 T5076 T5073 punct ",",/
R3542 T5077 T5073 cc but,/
R3543 T5078 T5079 neg not,those
R3544 T5079 T5084 nsubj those,/
R3545 T5080 T5079 prep of,those
R3546 T5081 T5083 det the,+
R3547 T5082 T5083 compound CCR5,+
R3548 T5083 T5080 pobj +,of
R3549 T5084 T5073 conj /,/
R3550 T5085 T5086 nummod +,mice
R3551 T5086 T5084 dobj mice,/
R3552 T5087 T5084 punct ",",/
R3553 T5088 T5084 conj contained,/
R3554 T5089 T5090 amod large,areas
R3555 T5090 T5088 dobj areas,contained
R3556 T5091 T5090 prep of,areas
R3557 T5092 T5091 pobj necrosis,of
R3558 T5093 T5064 punct .,indicated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5220 118-122 Protein denotes CCR5