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PMC:3342329 / 614-1050 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T99 245-249 Protein denotes CCR5
T100 290-294 Protein denotes CCR5
T98 185-200 Phosphorylation denotes phosphorylation
T97 171-181 Negative_regulation denotes inhibition
T96 151-158 Entity denotes nucleus
T95 138-141 Protein denotes p65
T94 130-133 Protein denotes p50
T93 113-126 Localization denotes translocation
T71 290-294 Protein denotes CCR5
T70 245-249 Protein denotes CCR5
T69 138-141 Protein denotes p65
T68 130-133 Protein denotes p50
R19 T94 T93 themeOf p50,translocation
R20 T95 T93 themeOf p65,translocation
R21 T96 T93 locationOf nucleus,translocation
R22 T98 T97 themeOf phosphorylation,inhibition

testone

Id Subject Object Predicate Lexical cue
T35 290-294 Protein denotes CCR5
T34 245-249 Protein denotes CCR5
T33 138-141 Protein denotes p65
T32 130-133 Protein denotes p50
T53 355-362 Phosphorylation denotes cleaved
T52 185-200 Phosphorylation denotes phosphorylation
T51 151-158 Entity denotes nucleus
T50 113-126 Localization denotes translocation
T49 82-89 Binding denotes binding
T48 64-74 Negative_regulation denotes inhibition
R5 T32 T50 themeOf p50,translocation
R6 T33 T50 themeOf p65,translocation
R11 T49 T48 themeOf binding,inhibition
R12 T51 T50 locationOf nucleus,translocation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T641 113-126 Localization denotes translocation
T627 290-294 Protein denotes CCR5
T626 245-249 Protein denotes CCR5
T625 138-141 Protein denotes p65
T624 130-133 Protein denotes p50
R342 T624 T641 themeOf p50,translocation
R343 T625 T641 themeOf p65,translocation

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T767 113-126 Localization denotes translocation
T753 290-294 Protein denotes CCR5
T752 245-249 Protein denotes CCR5
T751 138-141 Protein denotes p65
T750 130-133 Protein denotes p50
R411 T750 T767 themeOf p50,translocation
R412 T751 T767 themeOf p65,translocation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T424 423-431 NN denotes survival
T423 419-422 DT denotes the
T422 411-418 IN denotes whereas
T421 409-410 -COMMA- denotes ,
T420 401-409 VB denotes elevated
T419 397-400 VB denotes was
T418 395-396 -COMMA- denotes ,
T417 392-395 NN denotes Bax
T416 388-391 CC denotes and
T415 386-387 -COMMA- denotes ,
T414 382-386 NN denotes PARP
T413 374-381 VB denotes cleaved
T412 372-373 -COMMA- denotes ,
T411 363-372 NN denotes caspase-3
T410 355-362 VB denotes cleaved
T409 352-354 IN denotes as
T408 347-351 JJ denotes such
T407 345-346 -COMMA- denotes ,
T406 335-345 NN denotes expression
T405 327-334 NN denotes protein
T404 317-326 JJ denotes apoptotic
T403 310-316 NN denotes target
T402 304-309 NN denotes NF-κB
T401 298-302 NN denotes mice
T400 290-297 JJ denotes CCR5+/+
T399 287-289 IN denotes of
T398 279-286 NN denotes tissues
T397 270-278 NN denotes melanoma
T396 267-269 TO denotes to
T395 258-266 VB denotes compared
T394 253-257 NN denotes mice
T393 245-252 NN denotes CCR5−/−
T392 242-244 IN denotes of
T391 234-241 NN denotes tissues
T390 225-233 NN denotes melanoma
T389 221-224 DT denotes the
T388 218-220 IN denotes in
T387 212-217 VB denotes found
T386 208-211 VB denotes was
T385 204-207 NN denotes IκB
T384 201-203 IN denotes of
T383 185-200 NN denotes phosphorylation
T382 182-184 IN denotes of
T381 171-181 NN denotes inhibition
T380 167-170 DT denotes the
T379 159-166 IN denotes through
T378 151-158 NN denotes nucleus
T377 147-150 DT denotes the
T376 142-146 IN denotes into
T375 138-141 NN denotes p65
T374 134-137 CC denotes and
T373 130-133 NN denotes p50
T372 127-129 IN denotes of
T371 113-126 NN denotes translocation
T370 109-112 CC denotes and
T369 107-108 -COMMA- denotes ,
T368 102-107 NN denotes NF-κB
T367 99-101 IN denotes of
T366 90-98 NN denotes activity
T365 82-89 NN denotes binding
T364 78-81 NN denotes DNA
T363 75-77 IN denotes of
T362 64-74 NN denotes inhibition
T361 52-63 JJ denotes Significant
T360 44-50 NN denotes growth
T359 38-43 NN denotes tumor
T358 34-37 CC denotes and
T357 32-33 -COMMA- denotes ,
T356 23-32 NN denotes apoptosis
T355 21-22 -COMMA- denotes ,
T354 15-21 NN denotes growth
T353 10-14 NN denotes cell
T352 0-9 VB denotes involving
R134 T354 T353 arg1Of growth,cell
R135 T354 T355 arg1Of growth,","
R136 T355 T358 arg1Of ",",and
R137 T356 T355 arg2Of apoptosis,","
R138 T358 T352 arg2Of and,involving
R139 T358 T357 arg1Of and,","
R140 T360 T358 arg2Of growth,and
R141 T360 T359 arg1Of growth,tumor
R142 T362 T361 arg1Of inhibition,Significant
R143 T362 T363 arg1Of inhibition,of
R144 T362 T370 arg1Of inhibition,and
R145 T366 T363 arg2Of activity,of
R146 T366 T364 arg1Of activity,DNA
R147 T366 T365 arg1Of activity,binding
R148 T366 T367 arg1Of activity,of
R149 T368 T367 arg2Of NF-κB,of
R150 T370 T369 arg1Of and,","
R151 T370 T379 arg1Of and,through
R152 T370 T386 arg1Of and,was
R153 T370 T387 arg2Of and,found
R154 T371 T370 arg2Of translocation,and
R155 T371 T372 arg1Of translocation,of
R156 T371 T376 arg1Of translocation,into
R157 T373 T374 arg1Of p50,and
R158 T374 T372 arg2Of and,of
R159 T375 T374 arg2Of p65,and
R160 T378 T376 arg2Of nucleus,into
R161 T378 T377 arg1Of nucleus,the
R162 T381 T379 arg2Of inhibition,through
R163 T381 T380 arg1Of inhibition,the
R164 T381 T382 arg1Of inhibition,of
R165 T383 T382 arg2Of phosphorylation,of
R166 T383 T384 arg1Of phosphorylation,of
R167 T385 T384 arg2Of IκB,of
R168 T387 T386 arg2Of found,was
R169 T387 T388 arg1Of found,in
R170 T387 T395 arg1Of found,compared
R171 T391 T388 arg2Of tissues,in
R172 T391 T389 arg1Of tissues,the
R173 T391 T390 arg1Of tissues,melanoma
R174 T391 T392 arg1Of tissues,of
R175 T394 T392 arg2Of mice,of
R176 T394 T393 arg1Of mice,CCR5−/−
R177 T396 T395 arg2Of to,compared
R178 T398 T396 arg2Of tissues,to
R179 T398 T397 arg1Of tissues,melanoma
R180 T398 T399 arg1Of tissues,of
R181 T401 T399 arg2Of mice,of
R182 T401 T400 arg1Of mice,CCR5+/+
R183 T406 T402 arg1Of expression,NF-κB
R184 T406 T403 arg1Of expression,target
R185 T406 T404 arg1Of expression,apoptotic
R186 T406 T405 arg1Of expression,protein
R187 T406 T407 arg1Of expression,","
R188 T406 T409 arg1Of expression,as
R189 T406 T419 arg1Of expression,was
R190 T406 T420 arg2Of expression,elevated
R191 T409 T408 arg1Of as,such
R192 T411 T410 arg2Of caspase-3,cleaved
R193 T411 T413 arg2Of caspase-3,cleaved
R194 T411 T416 arg1Of caspase-3,and
R195 T413 T412 arg1Of cleaved,","
R196 T414 T413 arg3Of PARP,cleaved
R197 T416 T409 arg2Of and,as
R198 T416 T415 arg1Of and,","
R199 T417 T416 arg2Of Bax,and
R200 T420 T418 arg1Of elevated,","
R201 T420 T419 arg2Of elevated,was
R202 T420 T421 arg1Of elevated,","
R203 T420 T422 arg1Of elevated,whereas

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T177 290-294 Protein denotes CCR5
T176 245-249 Protein denotes CCR5
T175 138-141 Protein denotes p65
T174 130-133 Protein denotes p50

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T551 363-372 http://www.uniprot.org/uniprot/P42574 denotes caspase-3
T550 138-141 http://www.uniprot.org/uniprot/P21579 denotes p65
T549 138-141 http://www.uniprot.org/uniprot/Q04206 denotes p65
T548 130-133 http://www.uniprot.org/uniprot/P19838 denotes p50
T541 290-294 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T540 245-249 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T114 279-286 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T113 234-241 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

GO-BP

Id Subject Object Predicate Lexical cue
T207 185-207 http://purl.obolibrary.org/obo/GO_0007252 denotes phosphorylation of IκB
T206 185-200 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T205 171-207 http://purl.obolibrary.org/obo/GO_1903720 denotes inhibition of phosphorylation of IκB
T204 171-200 http://purl.obolibrary.org/obo/GO_0042326 denotes inhibition of phosphorylation
T203 64-89 http://purl.obolibrary.org/obo/GO_0039568 denotes inhibition of DNA binding
T202 64-89 http://purl.obolibrary.org/obo/GO_1904743 denotes inhibition of DNA binding
T201 64-89 http://purl.obolibrary.org/obo/GO_0043392 denotes inhibition of DNA binding
T200 23-32 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T198 23-32 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T197 10-21 http://purl.obolibrary.org/obo/GO_0016049 denotes cell growth
T190 44-50 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T189 15-21 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

GO-MF

Id Subject Object Predicate Lexical cue
T214 78-89 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T215 82-89 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T210 10-14 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T213 151-158 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus

sentences

Id Subject Object Predicate Lexical cue
T124 52-303 Sentence denotes Significant inhibition of DNA binding activity of NF-κB, and translocation of p50 and p65 into the nucleus through the inhibition of phosphorylation of IκB was found in the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice.
T7 52-303 Sentence denotes Significant inhibition of DNA binding activity of NF-κB, and translocation of p50 and p65 into the nucleus through the inhibition of phosphorylation of IκB was found in the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice.

simple1

Id Subject Object Predicate Lexical cue
T250 290-294 Protein denotes CCR5
T249 245-249 Protein denotes CCR5
T248 138-141 Protein denotes p65
T247 130-133 Protein denotes p50

DLUT931

Id Subject Object Predicate Lexical cue
T581 171-181 Negative_regulation denotes inhibition
T580 113-126 Localization denotes translocation
T567 290-294 Protein denotes CCR5
T566 245-249 Protein denotes CCR5
T565 138-141 Protein denotes p65
T564 130-133 Protein denotes p50
R318 T564 T580 themeOf p50,translocation
R319 T565 T580 themeOf p65,translocation
R324 T580 T581 themeOf translocation,inhibition
R325 T580 T581 themeOf translocation,inhibition

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T819 355-387 Protein_catabolism denotes cleaved caspase-3, cleaved PARP,
T810 304-309 Protein denotes NF-κB
T808 298-302 Protein denotes mice
T805 382-386 Protein denotes PARP
T801 253-257 Protein denotes mice
T799 392-395 Protein denotes Bax
T795 355-387 Protein denotes cleaved caspase-3, cleaved PARP,
T791 138-141 Protein denotes p65
T782 327-334 Protein denotes protein
T780 147-158 Entity denotes the nucleus
T777 99-107 Protein denotes of NF-κB
T775 130-133 Protein denotes p50
R421 T795 T819 themeOf "cleaved caspase-3, cleaved PARP,","cleaved caspase-3, cleaved PARP,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1008 423-431 NN denotes survival
T1007 419-422 DT denotes the
T1006 411-418 IN denotes whereas
T1005 409-410 , denotes ,
T1004 401-409 VBN denotes elevated
T1003 397-400 VBD denotes was
T1002 395-396 , denotes ,
T1001 392-395 NNP denotes Bax
T1000 388-391 CC denotes and
T999 386-387 , denotes ,
T998 382-386 NNP denotes PARP
T997 374-381 JJ denotes cleaved
T996 372-373 , denotes ,
T995 363-372 JJ denotes caspase-3
T994 355-362 JJ denotes cleaved
T993 352-354 IN denotes as
T992 347-351 JJ denotes such
T991 345-346 , denotes ,
T990 335-345 NN denotes expression
T989 327-334 NN denotes protein
T988 317-326 JJ denotes apoptotic
T987 310-316 NN denotes target
T986 304-309 JJ denotes NF-κB
T985 302-303 . denotes .
T984 298-302 NNS denotes mice
T983 296-297 NN denotes +
T982 295-296 NN denotes /
T981 294-295 CD denotes +
T980 290-294 CD denotes CCR5
T979 287-289 IN denotes of
T978 279-286 NNS denotes tissues
T977 270-278 VB denotes melanoma
T976 267-269 TO denotes to
T975 258-266 VBN denotes compared
T974 253-257 NNS denotes mice
T973 251-252 NN denotes −
T972 250-251 NN denotes /
T971 249-250 CD denotes −
T970 245-249 CD denotes CCR5
T969 242-244 IN denotes of
T968 234-241 NNS denotes tissues
T967 225-233 NN denotes melanoma
T966 221-224 DT denotes the
T965 218-220 IN denotes in
T964 212-217 VBN denotes found
T963 208-211 VBD denotes was
T962 204-207 NNP denotes IκB
T961 201-203 IN denotes of
T960 185-200 NN denotes phosphorylation
T959 182-184 IN denotes of
T958 171-181 NN denotes inhibition
T957 167-170 DT denotes the
T956 159-166 IN denotes through
T955 151-158 NN denotes nucleus
T954 147-150 DT denotes the
T953 142-146 IN denotes into
T952 138-141 CD denotes p65
T951 134-137 CC denotes and
T950 130-133 CD denotes p50
T949 127-129 IN denotes of
T948 113-126 NN denotes translocation
T947 109-112 CC denotes and
T946 107-108 , denotes ,
T945 102-107 NNP denotes NF-κB
T944 99-101 IN denotes of
T943 90-98 NN denotes activity
T942 82-89 JJ denotes binding
T941 78-81 NNP denotes DNA
T940 75-77 IN denotes of
T939 64-74 NN denotes inhibition
T938 52-63 JJ denotes Significant
T937 50-51 . denotes .
T936 44-50 NN denotes growth
T935 38-43 NN denotes tumor
T934 34-37 CC denotes and
T933 32-33 , denotes ,
T932 23-32 NN denotes apoptosis
T931 21-22 , denotes ,
T930 15-21 NN denotes growth
T929 10-14 NN denotes cell
T928 0-9 VBG denotes involving
R534 T929 T930 compound cell,growth
R535 T930 T928 dobj growth,involving
R536 T931 T930 punct ",",growth
R537 T932 T930 conj apoptosis,growth
R538 T933 T932 punct ",",apoptosis
R539 T934 T932 cc and,apoptosis
R540 T935 T936 compound tumor,growth
R541 T936 T932 conj growth,apoptosis
R543 T938 T939 amod Significant,inhibition
R544 T939 T964 nsubjpass inhibition,found
R545 T940 T939 prep of,inhibition
R546 T941 T940 pobj DNA,of
R547 T942 T943 amod binding,activity
R548 T943 T939 conj activity,inhibition
R549 T944 T943 prep of,activity
R550 T945 T944 pobj NF-κB,of
R551 T946 T943 punct ",",activity
R552 T947 T943 cc and,activity
R553 T948 T943 conj translocation,activity
R554 T949 T948 prep of,translocation
R555 T950 T949 pobj p50,of
R556 T951 T950 cc and,p50
R557 T952 T950 conj p65,p50
R558 T953 T939 prep into,inhibition
R559 T954 T955 det the,nucleus
R560 T955 T953 pobj nucleus,into
R561 T956 T939 prep through,inhibition
R562 T957 T958 det the,inhibition
R563 T958 T956 pobj inhibition,through
R564 T959 T958 prep of,inhibition
R565 T960 T959 pobj phosphorylation,of
R566 T961 T960 prep of,phosphorylation
R567 T962 T961 pobj IκB,of
R568 T963 T964 auxpass was,found
R569 T964 T964 ROOT found,found
R570 T965 T964 prep in,found
R571 T966 T968 det the,tissues
R572 T967 T968 compound melanoma,tissues
R573 T968 T965 pobj tissues,in
R574 T969 T968 prep of,tissues
R575 T970 T974 nummod CCR5,mice
R576 T971 T974 nummod −,mice
R577 T972 T974 compound /,mice
R578 T973 T974 compound −,mice
R579 T974 T969 pobj mice,of
R580 T975 T964 prep compared,found
R581 T976 T975 prep to,compared
R582 T977 T978 compound melanoma,tissues
R583 T978 T976 pobj tissues,to
R584 T979 T978 prep of,tissues
R585 T980 T984 nummod CCR5,mice
R586 T981 T984 nummod +,mice
R587 T982 T984 amod /,mice
R588 T983 T984 amod +,mice
R589 T984 T979 pobj mice,of
R590 T985 T964 punct .,found
R591 T986 T987 amod NF-κB,target
R592 T987 T1004 nsubjpass target,elevated
R593 T988 T990 amod apoptotic,expression
R594 T989 T990 compound protein,expression
R595 T990 T987 appos expression,target
R596 T991 T987 punct ",",target
R597 T992 T993 amod such,as
R598 T993 T987 prep as,target
R599 T994 T1004 nsubjpass cleaved,elevated
R600 T995 T1004 nsubjpass caspase-3,elevated
R601 T996 T998 punct ",",PARP
R602 T997 T998 compound cleaved,PARP
R603 T998 T995 appos PARP,caspase-3
R604 T999 T998 punct ",",PARP
R605 T1000 T998 cc and,PARP
R606 T1001 T998 conj Bax,PARP
R607 T1002 T1004 punct ",",elevated
R608 T1003 T1004 auxpass was,elevated
R609 T1004 T1004 ROOT elevated,elevated
R610 T1005 T1004 punct ",",elevated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T678 401-409 Positive_regulation denotes elevated
T677 401-409 Positive_regulation denotes elevated
T676 335-345 Gene_expression denotes expression
T675 335-345 Gene_expression denotes expression
T673 392-395 Protein denotes Bax
T672 382-386 Protein denotes PARP
T671 304-309 Protein denotes NF-κB
T670 64-74 Negative_regulation denotes inhibition
T669 64-74 Negative_regulation denotes inhibition
T668 171-181 Negative_regulation denotes inhibition
T667 171-181 Negative_regulation denotes inhibition
T666 171-181 Negative_regulation denotes inhibition
T665 113-126 Localization denotes translocation
T664 113-126 Localization denotes translocation
T663 64-74 Negative_regulation denotes inhibition
T662 185-200 Phosphorylation denotes phosphorylation
T661 151-158 Entity denotes nucleus
T660 82-89 Binding denotes binding
T659 204-207 Protein denotes IκB
T658 138-141 Protein denotes p65
T657 130-133 Protein denotes p50
T656 102-107 Protein denotes NF-κB
R352 T656 T660 themeOf NF-κB,binding
R353 T657 T664 themeOf p50,translocation
R354 T658 T665 themeOf p65,translocation
R355 T659 T662 themeOf IκB,phosphorylation
R356 T660 T663 themeOf binding,inhibition
R357 T661 T664 locationOf nucleus,translocation
R358 T661 T665 locationOf nucleus,translocation
R359 T662 T668 themeOf phosphorylation,inhibition
R360 T664 T666 themeOf translocation,inhibition
R361 T664 T669 themeOf translocation,inhibition
R362 T665 T667 themeOf translocation,inhibition
R363 T665 T670 themeOf translocation,inhibition
R364 T671 T675 themeOf NF-κB,expression
R365 T673 T676 themeOf Bax,expression
R367 T675 T677 themeOf expression,elevated
R368 T676 T678 themeOf expression,elevated