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PMC:3342329 / 471-722 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T92 15-19 Protein denotes CCR5
T67 15-19 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T31 15-19 Protein denotes CCR5
T49 225-232 Binding denotes binding
T48 207-217 Negative_regulation denotes inhibition
R11 T49 T48 themeOf binding,inhibition

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T623 15-19 Protein denotes CCR5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T749 15-19 Protein denotes CCR5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T369 250-251 -COMMA- denotes ,
T368 245-250 NN denotes NF-κB
T367 242-244 IN denotes of
T366 233-241 NN denotes activity
T365 225-232 NN denotes binding
T364 221-224 NN denotes DNA
T363 218-220 IN denotes of
T362 207-217 NN denotes inhibition
T361 195-206 JJ denotes Significant
T360 187-193 NN denotes growth
T359 181-186 NN denotes tumor
T358 177-180 CC denotes and
T357 175-176 -COMMA- denotes ,
T356 166-175 NN denotes apoptosis
T355 164-165 -COMMA- denotes ,
T354 158-164 NN denotes growth
T353 153-157 NN denotes cell
T352 143-152 VB denotes involving
T351 137-142 NN denotes genes
T350 134-136 IN denotes of
T349 123-133 NN denotes regulation
T348 119-122 DT denotes the
T347 116-118 IN denotes in
T346 109-115 NN denotes factor
T345 95-108 NN denotes transcription
T344 84-94 VB denotes implicated
T343 81-83 DT denotes an
T342 78-80 VB denotes is
T341 75-77 PRP denotes it
T340 69-74 IN denotes since
T339 63-68 NN denotes NF-κB
T338 60-62 IN denotes of
T337 49-59 NN denotes activation
T336 45-48 DT denotes the
T335 32-44 VB denotes investigated
T334 29-31 PRP denotes We
T333 23-27 NN denotes mice
T332 15-22 JJ denotes CCR5+/+
T331 12-14 TO denotes to
T330 3-11 VB denotes compared
R113 T330 T331 arg1Of compared,to
R114 T333 T331 arg2Of mice,to
R115 T333 T332 arg1Of mice,CCR5+/+
R116 T334 T335 arg1Of We,investigated
R117 T335 T340 arg1Of investigated,since
R118 T337 T335 arg2Of activation,investigated
R119 T337 T336 arg1Of activation,the
R120 T337 T338 arg1Of activation,of
R121 T339 T338 arg2Of NF-κB,of
R122 T341 T342 arg1Of it,is
R123 T342 T340 arg2Of is,since
R124 T346 T342 arg2Of factor,is
R125 T346 T343 arg1Of factor,an
R126 T346 T344 arg2Of factor,implicated
R127 T346 T345 arg1Of factor,transcription
R128 T346 T347 arg1Of factor,in
R129 T349 T347 arg2Of regulation,in
R130 T349 T348 arg1Of regulation,the
R131 T349 T350 arg1Of regulation,of
R132 T351 T350 arg2Of genes,of
R133 T351 T352 arg1Of genes,involving
R134 T354 T353 arg1Of growth,cell
R135 T354 T355 arg1Of growth,","
R136 T355 T358 arg1Of ",",and
R137 T356 T355 arg2Of apoptosis,","
R138 T358 T352 arg2Of and,involving
R139 T358 T357 arg1Of and,","
R140 T360 T358 arg2Of growth,and
R141 T360 T359 arg1Of growth,tumor
R142 T362 T361 arg1Of inhibition,Significant
R143 T362 T363 arg1Of inhibition,of
R145 T366 T363 arg2Of activity,of
R146 T366 T364 arg1Of activity,DNA
R147 T366 T365 arg1Of activity,binding
R148 T366 T367 arg1Of activity,of
R149 T368 T367 arg2Of NF-κB,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T173 15-19 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 15-19 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T203 207-232 http://purl.obolibrary.org/obo/GO_0039568 denotes inhibition of DNA binding
T202 207-232 http://purl.obolibrary.org/obo/GO_1904743 denotes inhibition of DNA binding
T201 207-232 http://purl.obolibrary.org/obo/GO_0043392 denotes inhibition of DNA binding
T200 166-175 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T198 166-175 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T197 153-164 http://purl.obolibrary.org/obo/GO_0016049 denotes cell growth
T196 123-133 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T195 95-133 http://purl.obolibrary.org/obo/GO_0051090 denotes transcription factor in the regulation
T194 95-133 http://purl.obolibrary.org/obo/GO_1901483 denotes transcription factor in the regulation
T193 95-108 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T192 49-68 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB
T190 187-193 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T189 158-164 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

GO-MF

Id Subject Object Predicate Lexical cue
T214 221-232 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T215 225-232 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T210 153-157 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T123 29-194 Sentence denotes We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth.
T6 29-194 Sentence denotes We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth.

simple1

Id Subject Object Predicate Lexical cue
T246 15-19 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T563 15-19 Protein denotes CCR5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T817 119-193 Regulation denotes the regulation of genes involving cell growth, apoptosis, and tumor growth
T814 29-108 Positive_regulation denotes We investigated the activation of NF-κB since it is an implicated transcription
T802 12-27 Protein denotes to CCR5+/+ mice
T797 60-68 Protein denotes of NF-κB
T778 134-193 Protein denotes of genes involving cell growth, apoptosis, and tumor growth
T777 242-250 Protein denotes of NF-κB
R419 T778 T817 themeOf "of genes involving cell growth, apoptosis, and tumor growth","the regulation of genes involving cell growth, apoptosis, and tumor growth"
R422 T797 T814 themeOf of NF-κB,We investigated the activation of NF-κB since it is an implicated transcription

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T946 250-251 , denotes ,
T945 245-250 NNP denotes NF-κB
T944 242-244 IN denotes of
T943 233-241 NN denotes activity
T942 225-232 JJ denotes binding
T941 221-224 NNP denotes DNA
T940 218-220 IN denotes of
T939 207-217 NN denotes inhibition
T938 195-206 JJ denotes Significant
T937 193-194 . denotes .
T936 187-193 NN denotes growth
T935 181-186 NN denotes tumor
T934 177-180 CC denotes and
T933 175-176 , denotes ,
T932 166-175 NN denotes apoptosis
T931 164-165 , denotes ,
T930 158-164 NN denotes growth
T929 153-157 NN denotes cell
T928 143-152 VBG denotes involving
T927 137-142 NNS denotes genes
T926 134-136 IN denotes of
T925 123-133 NN denotes regulation
T924 119-122 DT denotes the
T923 116-118 IN denotes in
T922 109-115 NN denotes factor
T921 95-108 NN denotes transcription
T920 84-94 VBN denotes implicated
T919 81-83 DT denotes an
T918 78-80 VBZ denotes is
T917 75-77 PRP denotes it
T916 69-74 IN denotes since
T915 63-68 NN denotes NF-κB
T914 60-62 IN denotes of
T913 49-59 NN denotes activation
T912 45-48 DT denotes the
T911 32-44 VBD denotes investigated
T910 29-31 PRP denotes We
T909 27-28 . denotes .
T908 23-27 NNS denotes mice
T907 21-22 NN denotes +
T906 20-21 NN denotes /
T905 19-20 CD denotes +
T904 15-19 CD denotes CCR5
T903 12-14 TO denotes to
T902 3-11 VBN denotes compared
R508 T903 T902 prep to,compared
R509 T904 T908 nummod CCR5,mice
R510 T905 T908 nummod +,mice
R511 T906 T908 compound /,mice
R512 T907 T908 compound +,mice
R513 T908 T903 pobj mice,to
R515 T910 T911 nsubj We,investigated
R516 T911 T911 ROOT investigated,investigated
R517 T912 T913 det the,activation
R518 T913 T911 dobj activation,investigated
R519 T914 T913 prep of,activation
R520 T915 T914 pobj NF-κB,of
R521 T916 T918 mark since,is
R522 T917 T918 nsubj it,is
R523 T918 T911 advcl is,investigated
R524 T919 T922 det an,factor
R525 T920 T922 amod implicated,factor
R526 T921 T922 compound transcription,factor
R527 T922 T918 attr factor,is
R528 T923 T922 prep in,factor
R529 T924 T925 det the,regulation
R530 T925 T923 pobj regulation,in
R531 T926 T925 prep of,regulation
R532 T927 T926 pobj genes,of
R533 T928 T927 acl involving,genes
R534 T929 T930 compound cell,growth
R535 T930 T928 dobj growth,involving
R536 T931 T930 punct ",",growth
R537 T932 T930 conj apoptosis,growth
R538 T933 T932 punct ",",apoptosis
R539 T934 T932 cc and,apoptosis
R540 T935 T936 compound tumor,growth
R541 T936 T932 conj growth,apoptosis
R542 T937 T911 punct .,investigated
R543 T938 T939 amod Significant,inhibition
R545 T940 T939 prep of,inhibition
R546 T941 T940 pobj DNA,of
R547 T942 T943 amod binding,activity
R548 T943 T939 conj activity,inhibition
R549 T944 T943 prep of,activity
R550 T945 T944 pobj NF-κB,of
R551 T946 T943 punct ",",activity

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T653 15-19 Protein denotes CCR5
T670 207-217 Negative_regulation denotes inhibition
T669 207-217 Negative_regulation denotes inhibition
T663 207-217 Negative_regulation denotes inhibition
T660 225-232 Binding denotes binding
T656 245-250 Protein denotes NF-κB
T655 49-59 Positive_regulation denotes activation
T654 63-68 Protein denotes NF-κB
R351 T654 T655 themeOf NF-κB,activation
R352 T656 T660 themeOf NF-κB,binding
R356 T660 T663 themeOf binding,inhibition