PMC:3342329 / 471-722
Annnotations
test3
{"project":"test3","denotations":[{"id":"T92","span":{"begin":15,"end":19},"obj":"Protein"},{"id":"T67","span":{"begin":15,"end":19},"obj":"Protein"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
testone
{"project":"testone","denotations":[{"id":"T31","span":{"begin":15,"end":19},"obj":"Protein"},{"id":"T49","span":{"begin":225,"end":232},"obj":"Binding"},{"id":"T48","span":{"begin":207,"end":217},"obj":"Negative_regulation"}],"relations":[{"id":"R11","pred":"themeOf","subj":"T49","obj":"T48"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T623","span":{"begin":15,"end":19},"obj":"Protein"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T749","span":{"begin":15,"end":19},"obj":"Protein"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T369","span":{"begin":250,"end":251},"obj":"-COMMA-"},{"id":"T368","span":{"begin":245,"end":250},"obj":"NN"},{"id":"T367","span":{"begin":242,"end":244},"obj":"IN"},{"id":"T366","span":{"begin":233,"end":241},"obj":"NN"},{"id":"T365","span":{"begin":225,"end":232},"obj":"NN"},{"id":"T364","span":{"begin":221,"end":224},"obj":"NN"},{"id":"T363","span":{"begin":218,"end":220},"obj":"IN"},{"id":"T362","span":{"begin":207,"end":217},"obj":"NN"},{"id":"T361","span":{"begin":195,"end":206},"obj":"JJ"},{"id":"T360","span":{"begin":187,"end":193},"obj":"NN"},{"id":"T359","span":{"begin":181,"end":186},"obj":"NN"},{"id":"T358","span":{"begin":177,"end":180},"obj":"CC"},{"id":"T357","span":{"begin":175,"end":176},"obj":"-COMMA-"},{"id":"T356","span":{"begin":166,"end":175},"obj":"NN"},{"id":"T355","span":{"begin":164,"end":165},"obj":"-COMMA-"},{"id":"T354","span":{"begin":158,"end":164},"obj":"NN"},{"id":"T353","span":{"begin":153,"end":157},"obj":"NN"},{"id":"T352","span":{"begin":143,"end":152},"obj":"VB"},{"id":"T351","span":{"begin":137,"end":142},"obj":"NN"},{"id":"T350","span":{"begin":134,"end":136},"obj":"IN"},{"id":"T349","span":{"begin":123,"end":133},"obj":"NN"},{"id":"T348","span":{"begin":119,"end":122},"obj":"DT"},{"id":"T347","span":{"begin":116,"end":118},"obj":"IN"},{"id":"T346","span":{"begin":109,"end":115},"obj":"NN"},{"id":"T345","span":{"begin":95,"end":108},"obj":"NN"},{"id":"T344","span":{"begin":84,"end":94},"obj":"VB"},{"id":"T343","span":{"begin":81,"end":83},"obj":"DT"},{"id":"T342","span":{"begin":78,"end":80},"obj":"VB"},{"id":"T341","span":{"begin":75,"end":77},"obj":"PRP"},{"id":"T340","span":{"begin":69,"end":74},"obj":"IN"},{"id":"T339","span":{"begin":63,"end":68},"obj":"NN"},{"id":"T338","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T337","span":{"begin":49,"end":59},"obj":"NN"},{"id":"T336","span":{"begin":45,"end":48},"obj":"DT"},{"id":"T335","span":{"begin":32,"end":44},"obj":"VB"},{"id":"T334","span":{"begin":29,"end":31},"obj":"PRP"},{"id":"T333","span":{"begin":23,"end":27},"obj":"NN"},{"id":"T332","span":{"begin":15,"end":22},"obj":"JJ"},{"id":"T331","span":{"begin":12,"end":14},"obj":"TO"},{"id":"T330","span":{"begin":3,"end":11},"obj":"VB"}],"relations":[{"id":"R113","pred":"arg1Of","subj":"T330","obj":"T331"},{"id":"R114","pred":"arg2Of","subj":"T333","obj":"T331"},{"id":"R115","pred":"arg1Of","subj":"T333","obj":"T332"},{"id":"R116","pred":"arg1Of","subj":"T334","obj":"T335"},{"id":"R117","pred":"arg1Of","subj":"T335","obj":"T340"},{"id":"R118","pred":"arg2Of","subj":"T337","obj":"T335"},{"id":"R119","pred":"arg1Of","subj":"T337","obj":"T336"},{"id":"R120","pred":"arg1Of","subj":"T337","obj":"T338"},{"id":"R121","pred":"arg2Of","subj":"T339","obj":"T338"},{"id":"R122","pred":"arg1Of","subj":"T341","obj":"T342"},{"id":"R123","pred":"arg2Of","subj":"T342","obj":"T340"},{"id":"R124","pred":"arg2Of","subj":"T346","obj":"T342"},{"id":"R125","pred":"arg1Of","subj":"T346","obj":"T343"},{"id":"R126","pred":"arg2Of","subj":"T346","obj":"T344"},{"id":"R127","pred":"arg1Of","subj":"T346","obj":"T345"},{"id":"R128","pred":"arg1Of","subj":"T346","obj":"T347"},{"id":"R129","pred":"arg2Of","subj":"T349","obj":"T347"},{"id":"R130","pred":"arg1Of","subj":"T349","obj":"T348"},{"id":"R131","pred":"arg1Of","subj":"T349","obj":"T350"},{"id":"R132","pred":"arg2Of","subj":"T351","obj":"T350"},{"id":"R133","pred":"arg1Of","subj":"T351","obj":"T352"},{"id":"R134","pred":"arg1Of","subj":"T354","obj":"T353"},{"id":"R135","pred":"arg1Of","subj":"T354","obj":"T355"},{"id":"R136","pred":"arg1Of","subj":"T355","obj":"T358"},{"id":"R137","pred":"arg2Of","subj":"T356","obj":"T355"},{"id":"R138","pred":"arg2Of","subj":"T358","obj":"T352"},{"id":"R139","pred":"arg1Of","subj":"T358","obj":"T357"},{"id":"R140","pred":"arg2Of","subj":"T360","obj":"T358"},{"id":"R141","pred":"arg1Of","subj":"T360","obj":"T359"},{"id":"R142","pred":"arg1Of","subj":"T362","obj":"T361"},{"id":"R143","pred":"arg1Of","subj":"T362","obj":"T363"},{"id":"R145","pred":"arg2Of","subj":"T366","obj":"T363"},{"id":"R146","pred":"arg1Of","subj":"T366","obj":"T364"},{"id":"R147","pred":"arg1Of","subj":"T366","obj":"T365"},{"id":"R148","pred":"arg1Of","subj":"T366","obj":"T367"},{"id":"R149","pred":"arg2Of","subj":"T368","obj":"T367"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T173","span":{"begin":15,"end":19},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T539","span":{"begin":15,"end":19},"obj":"http://www.uniprot.org/uniprot/P51681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T203","span":{"begin":207,"end":232},"obj":"http://purl.obolibrary.org/obo/GO_0039568"},{"id":"T202","span":{"begin":207,"end":232},"obj":"http://purl.obolibrary.org/obo/GO_1904743"},{"id":"T201","span":{"begin":207,"end":232},"obj":"http://purl.obolibrary.org/obo/GO_0043392"},{"id":"T200","span":{"begin":166,"end":175},"obj":"http://purl.obolibrary.org/obo/GO_0097194"},{"id":"T198","span":{"begin":166,"end":175},"obj":"http://purl.obolibrary.org/obo/GO_0006915"},{"id":"T197","span":{"begin":153,"end":164},"obj":"http://purl.obolibrary.org/obo/GO_0016049"},{"id":"T196","span":{"begin":123,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0065007"},{"id":"T195","span":{"begin":95,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0051090"},{"id":"T194","span":{"begin":95,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_1901483"},{"id":"T193","span":{"begin":95,"end":108},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T192","span":{"begin":49,"end":68},"obj":"http://purl.obolibrary.org/obo/GO_0051092"},{"id":"T190","span":{"begin":187,"end":193},"obj":"http://purl.obolibrary.org/obo/GO_0040007"},{"id":"T189","span":{"begin":158,"end":164},"obj":"http://purl.obolibrary.org/obo/GO_0040007"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T214","span":{"begin":221,"end":232},"obj":"http://purl.obolibrary.org/obo/GO_0003677"},{"id":"T215","span":{"begin":225,"end":232},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T210","span":{"begin":153,"end":157},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
sentences
{"project":"sentences","denotations":[{"id":"T123","span":{"begin":29,"end":194},"obj":"Sentence"},{"id":"T6","span":{"begin":29,"end":194},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
simple1
{"project":"simple1","denotations":[{"id":"T246","span":{"begin":15,"end":19},"obj":"Protein"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T563","span":{"begin":15,"end":19},"obj":"Protein"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T817","span":{"begin":119,"end":193},"obj":"Regulation"},{"id":"T814","span":{"begin":29,"end":108},"obj":"Positive_regulation"},{"id":"T802","span":{"begin":12,"end":27},"obj":"Protein"},{"id":"T797","span":{"begin":60,"end":68},"obj":"Protein"},{"id":"T778","span":{"begin":134,"end":193},"obj":"Protein"},{"id":"T777","span":{"begin":242,"end":250},"obj":"Protein"}],"relations":[{"id":"R419","pred":"themeOf","subj":"T778","obj":"T817"},{"id":"R422","pred":"themeOf","subj":"T797","obj":"T814"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T946","span":{"begin":250,"end":251},"obj":","},{"id":"T945","span":{"begin":245,"end":250},"obj":"NNP"},{"id":"T944","span":{"begin":242,"end":244},"obj":"IN"},{"id":"T943","span":{"begin":233,"end":241},"obj":"NN"},{"id":"T942","span":{"begin":225,"end":232},"obj":"JJ"},{"id":"T941","span":{"begin":221,"end":224},"obj":"NNP"},{"id":"T940","span":{"begin":218,"end":220},"obj":"IN"},{"id":"T939","span":{"begin":207,"end":217},"obj":"NN"},{"id":"T938","span":{"begin":195,"end":206},"obj":"JJ"},{"id":"T937","span":{"begin":193,"end":194},"obj":"."},{"id":"T936","span":{"begin":187,"end":193},"obj":"NN"},{"id":"T935","span":{"begin":181,"end":186},"obj":"NN"},{"id":"T934","span":{"begin":177,"end":180},"obj":"CC"},{"id":"T933","span":{"begin":175,"end":176},"obj":","},{"id":"T932","span":{"begin":166,"end":175},"obj":"NN"},{"id":"T931","span":{"begin":164,"end":165},"obj":","},{"id":"T930","span":{"begin":158,"end":164},"obj":"NN"},{"id":"T929","span":{"begin":153,"end":157},"obj":"NN"},{"id":"T928","span":{"begin":143,"end":152},"obj":"VBG"},{"id":"T927","span":{"begin":137,"end":142},"obj":"NNS"},{"id":"T926","span":{"begin":134,"end":136},"obj":"IN"},{"id":"T925","span":{"begin":123,"end":133},"obj":"NN"},{"id":"T924","span":{"begin":119,"end":122},"obj":"DT"},{"id":"T923","span":{"begin":116,"end":118},"obj":"IN"},{"id":"T922","span":{"begin":109,"end":115},"obj":"NN"},{"id":"T921","span":{"begin":95,"end":108},"obj":"NN"},{"id":"T920","span":{"begin":84,"end":94},"obj":"VBN"},{"id":"T919","span":{"begin":81,"end":83},"obj":"DT"},{"id":"T918","span":{"begin":78,"end":80},"obj":"VBZ"},{"id":"T917","span":{"begin":75,"end":77},"obj":"PRP"},{"id":"T916","span":{"begin":69,"end":74},"obj":"IN"},{"id":"T915","span":{"begin":63,"end":68},"obj":"NN"},{"id":"T914","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T913","span":{"begin":49,"end":59},"obj":"NN"},{"id":"T912","span":{"begin":45,"end":48},"obj":"DT"},{"id":"T911","span":{"begin":32,"end":44},"obj":"VBD"},{"id":"T910","span":{"begin":29,"end":31},"obj":"PRP"},{"id":"T909","span":{"begin":27,"end":28},"obj":"."},{"id":"T908","span":{"begin":23,"end":27},"obj":"NNS"},{"id":"T907","span":{"begin":21,"end":22},"obj":"NN"},{"id":"T906","span":{"begin":20,"end":21},"obj":"NN"},{"id":"T905","span":{"begin":19,"end":20},"obj":"CD"},{"id":"T904","span":{"begin":15,"end":19},"obj":"CD"},{"id":"T903","span":{"begin":12,"end":14},"obj":"TO"},{"id":"T902","span":{"begin":3,"end":11},"obj":"VBN"}],"relations":[{"id":"R508","pred":"prep","subj":"T903","obj":"T902"},{"id":"R509","pred":"nummod","subj":"T904","obj":"T908"},{"id":"R510","pred":"nummod","subj":"T905","obj":"T908"},{"id":"R511","pred":"compound","subj":"T906","obj":"T908"},{"id":"R512","pred":"compound","subj":"T907","obj":"T908"},{"id":"R513","pred":"pobj","subj":"T908","obj":"T903"},{"id":"R515","pred":"nsubj","subj":"T910","obj":"T911"},{"id":"R516","pred":"ROOT","subj":"T911","obj":"T911"},{"id":"R517","pred":"det","subj":"T912","obj":"T913"},{"id":"R518","pred":"dobj","subj":"T913","obj":"T911"},{"id":"R519","pred":"prep","subj":"T914","obj":"T913"},{"id":"R520","pred":"pobj","subj":"T915","obj":"T914"},{"id":"R521","pred":"mark","subj":"T916","obj":"T918"},{"id":"R522","pred":"nsubj","subj":"T917","obj":"T918"},{"id":"R523","pred":"advcl","subj":"T918","obj":"T911"},{"id":"R524","pred":"det","subj":"T919","obj":"T922"},{"id":"R525","pred":"amod","subj":"T920","obj":"T922"},{"id":"R526","pred":"compound","subj":"T921","obj":"T922"},{"id":"R527","pred":"attr","subj":"T922","obj":"T918"},{"id":"R528","pred":"prep","subj":"T923","obj":"T922"},{"id":"R529","pred":"det","subj":"T924","obj":"T925"},{"id":"R530","pred":"pobj","subj":"T925","obj":"T923"},{"id":"R531","pred":"prep","subj":"T926","obj":"T925"},{"id":"R532","pred":"pobj","subj":"T927","obj":"T926"},{"id":"R533","pred":"acl","subj":"T928","obj":"T927"},{"id":"R534","pred":"compound","subj":"T929","obj":"T930"},{"id":"R535","pred":"dobj","subj":"T930","obj":"T928"},{"id":"R536","pred":"punct","subj":"T931","obj":"T930"},{"id":"R537","pred":"conj","subj":"T932","obj":"T930"},{"id":"R538","pred":"punct","subj":"T933","obj":"T932"},{"id":"R539","pred":"cc","subj":"T934","obj":"T932"},{"id":"R540","pred":"compound","subj":"T935","obj":"T936"},{"id":"R541","pred":"conj","subj":"T936","obj":"T932"},{"id":"R542","pred":"punct","subj":"T937","obj":"T911"},{"id":"R543","pred":"amod","subj":"T938","obj":"T939"},{"id":"R545","pred":"prep","subj":"T940","obj":"T939"},{"id":"R546","pred":"pobj","subj":"T941","obj":"T940"},{"id":"R547","pred":"amod","subj":"T942","obj":"T943"},{"id":"R548","pred":"conj","subj":"T943","obj":"T939"},{"id":"R549","pred":"prep","subj":"T944","obj":"T943"},{"id":"R550","pred":"pobj","subj":"T945","obj":"T944"},{"id":"R551","pred":"punct","subj":"T946","obj":"T943"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T653","span":{"begin":15,"end":19},"obj":"Protein"},{"id":"T670","span":{"begin":207,"end":217},"obj":"Negative_regulation"},{"id":"T669","span":{"begin":207,"end":217},"obj":"Negative_regulation"},{"id":"T663","span":{"begin":207,"end":217},"obj":"Negative_regulation"},{"id":"T660","span":{"begin":225,"end":232},"obj":"Binding"},{"id":"T656","span":{"begin":245,"end":250},"obj":"Protein"},{"id":"T655","span":{"begin":49,"end":59},"obj":"Positive_regulation"},{"id":"T654","span":{"begin":63,"end":68},"obj":"Protein"}],"relations":[{"id":"R351","pred":"themeOf","subj":"T654","obj":"T655"},{"id":"R352","pred":"themeOf","subj":"T656","obj":"T660"},{"id":"R356","pred":"themeOf","subj":"T660","obj":"T663"}],"text":"en compared to CCR5+/+ mice. We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth. Significant inhibition of DNA binding activity of NF-κB,"}