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PMC:3342329 / 34915-35453 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16837 536-537 -RRB- denotes )
T16836 533-536 NNP denotes USA
T16835 531-532 -COMMA- denotes ,
T16834 524-531 NNP denotes Systems
T16833 522-523 NNP denotes D
T16832 521-522 CC denotes &
T16831 520-521 NNP denotes R
T16830 518-519 -COMMA- denotes ,
T16829 512-518 NN denotes ARY006
T16828 511-512 -SHARP- denotes #
T16827 509-510 -COMMA- denotes ,
T16826 500-509 NNP denotes Profiler™
T16825 491-499 NNP denotes Proteome
T16824 490-491 -LRB- denotes (
T16823 481-489 NN denotes supplier
T16822 478-480 IN denotes by
T16821 469-477 VB denotes provided
T16820 460-468 NN denotes protocol
T16819 456-459 DT denotes the
T16818 453-455 IN denotes as
T16817 447-452 NN denotes array
T16816 438-446 NN denotes cytokine
T16815 432-437 NN denotes Mouse
T16814 428-431 IN denotes for
T16813 423-427 VB denotes used
T16812 418-422 VB denotes were
T16811 416-417 -COMMA- denotes ,
T16810 411-416 NN denotes group
T16809 407-410 IN denotes per
T16808 399-406 NN denotes samples
T16807 393-398 CD denotes three
T16806 388-392 IN denotes from
T16805 378-387 VB denotes collected
T16804 376-377 -COMMA- denotes ,
T16803 368-376 NN denotes proteins
T16802 365-367 IN denotes of
T16801 362-364 NN denotes mg
T16800 358-361 CD denotes 4.5
T16799 348-356 NN denotes blotting
T16798 340-347 JJ denotes western
T16797 336-339 IN denotes for
T16796 333-335 IN denotes as
T16795 329-332 NN denotes way
T16794 324-328 JJ denotes same
T16793 320-323 DT denotes the
T16792 317-319 IN denotes in
T16791 311-316 NN denotes assay
T16790 303-310 NN denotes protein
T16789 293-302 VB denotes performed
T16788 288-292 VB denotes were
T16787 280-287 NN denotes lysates
T16786 273-279 NN denotes tissue
T16785 269-272 DT denotes The
T16784 261-267 NN denotes debris
T16783 252-260 JJ denotes cellular
T16782 245-251 VB denotes remove
T16781 242-244 TO denotes to
T16780 238-241 NN denotes min
T16779 236-237 CD denotes 5
T16778 232-235 IN denotes for
T16777 223-231 NN denotes 10,000×g
T16776 220-222 IN denotes at
T16775 208-219 VB denotes centrifuged
T16774 204-207 CC denotes and
T16773 202-203 -COMMA- denotes ,
T16772 196-202 VB denotes thawed
T16771 194-195 -COMMA- denotes ,
T16770 189-194 NN denotes −70°C
T16769 186-188 IN denotes at
T16768 179-185 VB denotes frozen
T16767 174-178 VB denotes were
T16766 166-173 NN denotes samples
T16765 162-165 DT denotes The
T16764 159-160 -RRB- denotes )
T16763 158-159 NN denotes %
T16762 157-158 CD denotes 1
T16761 143-156 NN denotes concentration
T16760 137-142 JJ denotes final
T16759 136-137 -LRB- denotes (
T16758 130-135 NN denotes X-100
T16757 123-129 NN denotes Triton
T16756 119-122 CC denotes and
T16755 117-118 -RRB- denotes )
T16754 114-117 NNP denotes USA
T16753 112-113 -COMMA- denotes ,
T16752 99-112 NNP denotes Sigma-Aldrich
T16751 98-99 -LRB- denotes (
T16750 89-97 NN denotes cocktail
T16749 79-88 NN denotes inhibitor
T16748 70-78 NN denotes protease
T16747 65-69 IN denotes with
T16746 61-64 NNP denotes PBS
T16745 58-60 IN denotes in
T16744 46-57 VB denotes homogenized
T16743 42-45 CC denotes and
T16742 34-41 VB denotes excised
T16741 29-33 VB denotes were
T16740 21-28 NN denotes tissues
T16739 14-20 NN denotes spleen
T16738 10-13 CC denotes and
T16737 4-9 NN denotes tumor
T16736 0-3 DT denotes The
R12042 T16737 T16738 arg1Of tumor,and
R12043 T16739 T16738 arg2Of spleen,and
R12044 T16740 T16736 arg1Of tissues,The
R12045 T16740 T16737 arg1Of tissues,tumor
R12046 T16740 T16739 arg1Of tissues,spleen
R12047 T16740 T16741 arg1Of tissues,were
R12048 T16740 T16742 arg2Of tissues,excised
R12049 T16740 T16744 arg2Of tissues,homogenized
R12050 T16742 T16743 arg1Of excised,and
R12051 T16743 T16741 arg2Of and,were
R12052 T16744 T16743 arg2Of homogenized,and
R12053 T16744 T16745 arg1Of homogenized,in
R12054 T16744 T16747 arg1Of homogenized,with
R12055 T16746 T16745 arg2Of PBS,in
R12056 T16750 T16748 arg1Of cocktail,protease
R12057 T16750 T16749 arg1Of cocktail,inhibitor
R12058 T16750 T16751 arg1Of cocktail,(
R12059 T16750 T16756 arg1Of cocktail,and
R12060 T16752 T16751 arg2Of Sigma-Aldrich,(
R12061 T16752 T16753 arg1Of Sigma-Aldrich,","
R12062 T16752 T16754 arg1Of Sigma-Aldrich,USA
R12063 T16755 T16751 arg3Of ),(
R12064 T16756 T16747 arg2Of and,with
R12065 T16758 T16756 arg2Of X-100,and
R12066 T16758 T16757 arg1Of X-100,Triton
R12067 T16758 T16759 arg1Of X-100,(
R12068 T16763 T16759 arg2Of %,(
R12069 T16763 T16760 arg1Of %,final
R12070 T16763 T16761 arg1Of %,concentration
R12071 T16763 T16762 arg1Of %,1
R12072 T16764 T16759 arg3Of ),(
R12073 T16766 T16765 arg1Of samples,The
R12074 T16766 T16767 arg1Of samples,were
R12075 T16766 T16768 arg2Of samples,frozen
R12076 T16766 T16772 arg2Of samples,thawed
R12077 T16766 T16775 arg2Of samples,centrifuged
R12078 T16768 T16769 arg1Of frozen,at
R12079 T16768 T16771 arg1Of frozen,","
R12080 T16770 T16769 arg2Of −70°C,at
R12081 T16771 T16774 arg1Of ",",and
R12082 T16772 T16771 arg2Of thawed,","
R12083 T16774 T16767 arg2Of and,were
R12084 T16774 T16773 arg1Of and,","
R12085 T16775 T16774 arg2Of centrifuged,and
R12086 T16775 T16776 arg1Of centrifuged,at
R12087 T16775 T16778 arg1Of centrifuged,for
R12088 T16775 T16781 modOf centrifuged,to
R12089 T16777 T16776 arg2Of "10,000×g",at
R12090 T16780 T16778 arg2Of min,for
R12091 T16780 T16779 arg1Of min,5
R12092 T16782 T16781 arg1Of remove,to
R12093 T16784 T16782 arg2Of debris,remove
R12094 T16784 T16783 arg1Of debris,cellular
R12095 T16787 T16785 arg1Of lysates,The
R12096 T16787 T16786 arg1Of lysates,tissue
R12097 T16787 T16788 arg1Of lysates,were
R12098 T16788 T16792 arg1Of were,in
R12099 T16791 T16788 arg2Of assay,were
R12100 T16791 T16789 arg2Of assay,performed
R12101 T16791 T16790 arg1Of assay,protein
R12102 T16792 T16797 arg1Of in,for
R12103 T16795 T16792 arg2Of way,in
R12104 T16795 T16793 arg1Of way,the
R12105 T16795 T16794 arg1Of way,same
R12106 T16797 T16796 arg1Of for,as
R12107 T16799 T16797 arg2Of blotting,for
R12108 T16799 T16798 arg1Of blotting,western
R12109 T16801 T16800 arg1Of mg,4.5
R12110 T16801 T16802 arg1Of mg,of
R12111 T16801 T16804 arg1Of mg,","
R12112 T16801 T16805 arg2Of mg,collected
R12113 T16801 T16812 arg1Of mg,were
R12114 T16801 T16813 arg2Of mg,used
R12115 T16803 T16802 arg2Of proteins,of
R12116 T16805 T16806 arg1Of collected,from
R12117 T16808 T16806 arg2Of samples,from
R12118 T16808 T16807 arg1Of samples,three
R12119 T16808 T16809 arg1Of samples,per
R12120 T16810 T16809 arg2Of group,per
R12121 T16813 T16811 arg1Of used,","
R12122 T16813 T16812 arg2Of used,were
R12123 T16813 T16814 arg1Of used,for
R12124 T16817 T16814 arg2Of array,for
R12125 T16817 T16815 arg1Of array,Mouse
R12126 T16817 T16816 arg1Of array,cytokine
R12127 T16817 T16818 arg1Of array,as
R12128 T16820 T16818 arg2Of protocol,as
R12129 T16820 T16819 arg1Of protocol,the
R12130 T16820 T16821 arg2Of protocol,provided
R12131 T16823 T16821 arg1Of supplier,provided
R12132 T16823 T16822 arg2Of supplier,by
R12133 T16823 T16824 arg1Of supplier,(
R12134 T16826 T16825 arg1Of Profiler™,Proteome
R12135 T16826 T16827 arg1Of Profiler™,","
R12136 T16827 T16830 arg1Of ",",","
R12137 T16829 T16827 arg2Of ARY006,","
R12138 T16829 T16828 arg1Of ARY006,#
R12139 T16830 T16824 arg2Of ",",(
R12140 T16830 T16835 arg1Of ",",","
R12141 T16834 T16830 arg2Of Systems,","
R12142 T16834 T16831 arg1Of Systems,R
R12143 T16834 T16832 arg1Of Systems,&
R12144 T16834 T16833 arg1Of Systems,D
R12145 T16836 T16835 arg2Of USA,","
R12146 T16837 T16824 arg3Of ),(

UBERON-AE

Id Subject Object Predicate Lexical cue
T16727 273-279 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T16726 21-28 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T16725 14-20 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen

GO-BP

Id Subject Object Predicate Lexical cue
T16733 252-260 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular

sentences

Id Subject Object Predicate Lexical cue
T16732 358-538 Sentence denotes 4.5 mg of proteins, collected from three samples per group, were used for Mouse cytokine array as the protocol provided by supplier (Proteome Profiler™, #ARY006, R&D Systems, USA).
T16731 269-357 Sentence denotes The tissue lysates were performed protein assay in the same way as for western blotting.
T16730 162-268 Sentence denotes The samples were frozen at −70°C, thawed, and centrifuged at 10,000×g for 5 min to remove cellular debris.
T16729 0-161 Sentence denotes The tumor and spleen tissues were excised and homogenized in PBS with protease inhibitor cocktail (Sigma-Aldrich, USA) and Triton X-100 (final concentration 1%).
T262 0-161 Sentence denotes The tumor and spleen tissues were excised and homogenized in PBS with protease inhibitor cocktail (Sigma-Aldrich, USA) and Triton X-100 (final concentration 1%).
T263 162-268 Sentence denotes The samples were frozen at −70°C, thawed, and centrifuged at 10,000×g for 5 min to remove cellular debris.
T264 269-357 Sentence denotes The tissue lysates were performed protein assay in the same way as for western blotting.
T265 358-538 Sentence denotes 4.5 mg of proteins, collected from three samples per group, were used for Mouse cytokine array as the protocol provided by supplier (Proteome Profiler™, #ARY006, R&D Systems, USA).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16961 70-118 Entity denotes protease inhibitor cocktail (Sigma-Aldrich, USA)
T16960 99-104 Protein denotes Sigma
T16959 123-160 Entity denotes Triton X-100 (final concentration 1%)
T16958 303-316 Protein denotes protein assay
T16957 368-417 Protein denotes proteins, collected from three samples per group,
T16956 70-78 Protein denotes protease
T16955 432-452 Protein denotes Mouse cytokine array

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16953 537-538 . denotes .
T16952 536-537 -RRB- denotes )
T16951 533-536 NNP denotes USA
T16950 531-532 , denotes ,
T16949 524-531 NNPS denotes Systems
T16948 520-523 NNP denotes R&D
T16947 518-519 , denotes ,
T16946 515-518 CD denotes 006
T16945 511-515 NNP denotes #ARY
T16944 509-510 , denotes ,
T16943 508-509 NNP denotes ™
T16942 500-508 NNP denotes Profiler
T16941 491-499 NNP denotes Proteome
T16940 490-491 -LRB- denotes (
T16939 481-489 NN denotes supplier
T16938 478-480 IN denotes by
T16924 399-406 NNS denotes samples
T16923 393-398 CD denotes three
T16922 388-392 IN denotes from
T16921 378-387 VBN denotes collected
T16920 376-377 , denotes ,
T16919 368-376 NNS denotes proteins
T16918 365-367 IN denotes of
T16917 362-364 NN denotes mg
T16916 358-361 CD denotes 4.5
T16915 356-357 . denotes .
T16914 348-356 VBG denotes blotting
T16913 340-347 JJ denotes western
T16912 336-339 IN denotes for
T16911 333-335 IN denotes as
T16910 329-332 NN denotes way
T16909 324-328 JJ denotes same
T16908 320-323 DT denotes the
T16907 317-319 IN denotes in
T16906 311-316 NN denotes assay
T16905 303-310 NN denotes protein
T16904 293-302 VBN denotes performed
T16903 288-292 VBD denotes were
T16902 280-287 VBZ denotes lysates
T16901 273-279 NN denotes tissue
T16900 269-272 DT denotes The
T16899 267-268 . denotes .
T16898 261-267 NN denotes debris
T16897 252-260 JJ denotes cellular
T16896 245-251 VB denotes remove
T16895 242-244 TO denotes to
T16894 238-241 NN denotes min
T16893 236-237 CD denotes 5
T16892 232-235 IN denotes for
T16891 230-231 NN denotes g
T16890 229-230 CD denotes ×
T16889 223-229 CD denotes 10,000
T16888 220-222 IN denotes at
T16887 208-219 VBD denotes centrifuged
T16886 204-207 CC denotes and
T16885 202-203 , denotes ,
T16884 196-202 VBD denotes thawed
T16883 194-195 , denotes ,
T16882 193-194 NNP denotes C
T16881 192-193 NN denotes °
T16880 190-192 CD denotes 70
T16879 189-190 CD denotes −
T16878 186-188 IN denotes at
T16877 179-185 VBN denotes frozen
T16876 174-178 VBD denotes were
T16875 166-173 NNS denotes samples
T16874 162-165 DT denotes The
T16873 160-161 . denotes .
T16872 159-160 -RRB- denotes )
T16871 158-159 NN denotes %
T16870 157-158 CD denotes 1
T16869 143-156 NN denotes concentration
T16868 137-142 JJ denotes final
T16867 136-137 -LRB- denotes (
T16866 130-135 NNP denotes X-100
T16865 123-129 NNP denotes Triton
T16864 119-122 CC denotes and
T16863 117-118 -RRB- denotes )
T16862 114-117 NNP denotes USA
T16861 112-113 , denotes ,
T16860 99-112 NNP denotes Sigma-Aldrich
T16859 98-99 -LRB- denotes (
T16858 89-97 NN denotes cocktail
T16857 79-88 NN denotes inhibitor
T16856 70-78 NN denotes protease
T16855 65-69 IN denotes with
T16854 61-64 NNP denotes PBS
T16853 58-60 IN denotes in
T16852 46-57 VBN denotes homogenized
T16851 42-45 CC denotes and
T16850 34-41 VBN denotes excised
T16849 29-33 VBD denotes were
T16848 21-28 NNS denotes tissues
T16847 14-20 NN denotes spleen
T16846 10-13 CC denotes and
T16845 4-9 NN denotes tumor
T16844 0-3 DT denotes The
T16937 469-477 VBN denotes provided
T16936 460-468 NN denotes protocol
T16935 456-459 DT denotes the
T16934 453-455 IN denotes as
T16933 447-452 NN denotes array
T16932 438-446 NN denotes cytokine
T16931 432-437 NNP denotes Mouse
T16930 428-431 IN denotes for
T16929 423-427 VBN denotes used
T16928 418-422 VBD denotes were
T16927 416-417 , denotes ,
T16926 411-416 NN denotes group
T16925 407-410 IN denotes per
R12149 T16844 T16845 det The,tumor
R12150 T16845 T16848 nmod tumor,tissues
R12151 T16846 T16845 cc and,tumor
R12152 T16847 T16845 conj spleen,tumor
R12153 T16848 T16850 nsubjpass tissues,excised
R12154 T16849 T16850 auxpass were,excised
R12155 T16850 T16850 ROOT excised,excised
R12156 T16851 T16850 cc and,excised
R12157 T16852 T16850 conj homogenized,excised
R12158 T16853 T16852 prep in,homogenized
R12159 T16854 T16853 pobj PBS,in
R12160 T16855 T16852 prep with,homogenized
R12161 T16856 T16858 compound protease,cocktail
R12162 T16857 T16858 compound inhibitor,cocktail
R12163 T16858 T16855 pobj cocktail,with
R12164 T16859 T16860 punct (,Sigma-Aldrich
R12165 T16860 T16858 appos Sigma-Aldrich,cocktail
R12166 T16861 T16860 punct ",",Sigma-Aldrich
R12167 T16862 T16860 appos USA,Sigma-Aldrich
R12168 T16863 T16860 punct ),Sigma-Aldrich
R12169 T16864 T16858 cc and,cocktail
R12170 T16865 T16866 compound Triton,X-100
R12171 T16866 T16858 conj X-100,cocktail
R12172 T16867 T16869 punct (,concentration
R12173 T16868 T16869 amod final,concentration
R12174 T16869 T16866 parataxis concentration,X-100
R12175 T16870 T16871 nummod 1,%
R12176 T16871 T16869 appos %,concentration
R12177 T16872 T16869 punct ),concentration
R12178 T16873 T16850 punct .,excised
R12179 T16874 T16875 det The,samples
R12180 T16875 T16877 nsubjpass samples,frozen
R12181 T16876 T16877 auxpass were,frozen
R12182 T16877 T16877 ROOT frozen,frozen
R12183 T16878 T16877 prep at,frozen
R12184 T16879 T16882 nummod −,C
R12185 T16880 T16881 nummod 70,°
R12186 T16881 T16882 compound °,C
R12187 T16882 T16878 pobj C,at
R12188 T16883 T16877 punct ",",frozen
R12189 T16884 T16877 conj thawed,frozen
R12190 T16885 T16884 punct ",",thawed
R12191 T16886 T16884 cc and,thawed
R12192 T16887 T16884 conj centrifuged,thawed
R12193 T16888 T16887 prep at,centrifuged
R12194 T16889 T16890 nummod "10,000",×
R12195 T16890 T16891 compound ×,g
R12196 T16891 T16888 pobj g,at
R12197 T16892 T16896 mark for,remove
R12198 T16893 T16894 nummod 5,min
R12199 T16894 T16896 nsubj min,remove
R12200 T16895 T16896 aux to,remove
R12201 T16896 T16887 advcl remove,centrifuged
R12202 T16897 T16898 amod cellular,debris
R12203 T16898 T16896 dobj debris,remove
R12204 T16899 T16877 punct .,frozen
R12205 T16900 T16901 det The,tissue
R12206 T16901 T16902 compound tissue,lysates
R12207 T16902 T16904 nsubjpass lysates,performed
R12208 T16903 T16904 auxpass were,performed
R12209 T16904 T16904 ROOT performed,performed
R12210 T16905 T16906 compound protein,assay
R12211 T16906 T16904 dobj assay,performed
R12212 T16907 T16904 prep in,performed
R12213 T16908 T16910 det the,way
R12214 T16909 T16910 amod same,way
R12215 T16910 T16907 pobj way,in
R12216 T16911 T16910 prep as,way
R12217 T16912 T16911 prep for,as
R12218 T16913 T16914 amod western,blotting
R12219 T16914 T16912 pobj blotting,for
R12220 T16915 T16904 punct .,performed
R12221 T16916 T16917 nummod 4.5,mg
R12222 T16917 T16929 nsubjpass mg,used
R12223 T16918 T16917 prep of,mg
R12224 T16919 T16918 pobj proteins,of
R12225 T16920 T16917 punct ",",mg
R12226 T16921 T16917 acl collected,mg
R12227 T16922 T16921 prep from,collected
R12228 T16923 T16924 nummod three,samples
R12229 T16924 T16922 pobj samples,from
R12230 T16925 T16924 prep per,samples
R12231 T16926 T16925 pobj group,per
R12232 T16927 T16929 punct ",",used
R12233 T16928 T16929 auxpass were,used
R12234 T16929 T16929 ROOT used,used
R12235 T16930 T16929 prep for,used
R12236 T16931 T16933 compound Mouse,array
R12237 T16932 T16933 compound cytokine,array
R12238 T16933 T16930 pobj array,for
R12239 T16934 T16929 prep as,used
R12240 T16935 T16936 det the,protocol
R12241 T16936 T16934 pobj protocol,as
R12242 T16937 T16936 acl provided,protocol
R12243 T16938 T16937 agent by,provided
R12244 T16939 T16938 pobj supplier,by
R12245 T16940 T16943 punct (,™
R12246 T16941 T16943 compound Proteome,™
R12247 T16942 T16943 compound Profiler,™
R12248 T16943 T16939 appos ™,supplier
R12249 T16944 T16943 punct ",",™
R12250 T16945 T16946 compound #ARY,006
R12251 T16946 T16943 appos 006,™
R12252 T16947 T16943 punct ",",™
R12253 T16948 T16949 compound R&D,Systems
R12254 T16949 T16943 conj Systems,™
R12255 T16950 T16949 punct ",",Systems
R12256 T16951 T16949 conj USA,Systems
R12257 T16952 T16943 punct ),™
R12258 T16953 T16929 punct .,used

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16839 70-118 Protein denotes protease inhibitor cocktail (Sigma-Aldrich, USA)
T16838 61-64 Protein denotes PBS