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PMC:3342329 / 33907-34111 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16290 181-187 VB denotes remove
T16289 178-180 TO denotes to
T16288 176-177 -RRB- denotes )
T16287 171-176 NN denotes LONZA
T16286 169-170 -COMMA- denotes ,
T16285 163-169 NN denotes buffer
T16284 156-162 NN denotes lysing
T16283 152-155 NN denotes ACK
T16282 151-152 -LRB- denotes (
T16281 144-150 NN denotes buffer
T16280 138-143 NN denotes lysis
T16279 135-137 IN denotes in
T16278 128-134 VB denotes placed
T16277 123-127 RB denotes then
T16276 119-122 CC denotes and
T16275 117-118 -RRB- denotes )
T16274 107-117 NN denotes PharMingen
T16273 104-106 NN denotes BD
T16272 102-103 -COLON- denotes ;
T16271 94-102 NN denotes strainer
T16270 89-93 NN denotes cell
T16269 86-88 NN denotes µm
T16268 82-85 CD denotes 100
T16267 81-82 -LRB- denotes (
T16266 72-80 VB denotes filtered
T16265 70-71 -COMMA- denotes ,
T16264 67-70 NNP denotes PBS
T16263 64-66 IN denotes in
T16262 51-63 RB denotes mechanically
T16261 39-50 VB denotes homogenized
T16260 31-38 RB denotes briefly
T16259 26-30 VB denotes were
T16258 17-25 NN denotes biopsies
T16257 11-16 NN denotes tumor
T16256 7-10 CC denotes and
T16255 0-6 NN denotes Spleen
T16293 198-203 NN denotes cells
T16292 192-197 NN denotes blood
T16291 188-191 JJ denotes red
R11622 T16255 T16256 arg1Of Spleen,and
R11623 T16257 T16256 arg2Of tumor,and
R11624 T16258 T16255 arg1Of biopsies,Spleen
R11625 T16258 T16257 arg1Of biopsies,tumor
R11626 T16258 T16259 arg1Of biopsies,were
R11627 T16258 T16261 arg2Of biopsies,homogenized
R11628 T16258 T16278 arg2Of biopsies,placed
R11629 T16261 T16262 arg1Of homogenized,mechanically
R11630 T16261 T16263 arg1Of homogenized,in
R11631 T16261 T16267 arg1Of homogenized,(
R11632 T16261 T16276 arg1Of homogenized,and
R11633 T16264 T16263 arg2Of PBS,in
R11634 T16264 T16265 arg1Of PBS,","
R11635 T16264 T16266 arg2Of PBS,filtered
R11636 T16271 T16268 arg1Of strainer,100
R11637 T16271 T16269 arg1Of strainer,µm
R11638 T16271 T16270 arg1Of strainer,cell
R11639 T16271 T16272 arg1Of strainer,;
R11640 T16272 T16267 arg2Of ;,(
R11641 T16274 T16272 arg2Of PharMingen,;
R11642 T16274 T16273 arg1Of PharMingen,BD
R11643 T16275 T16267 arg3Of ),(
R11644 T16276 T16259 arg2Of and,were
R11645 T16276 T16260 arg1Of and,briefly
R11646 T16278 T16276 arg2Of placed,and
R11647 T16278 T16277 arg1Of placed,then
R11648 T16278 T16279 arg1Of placed,in
R11649 T16278 T16289 modOf placed,to
R11650 T16281 T16279 arg2Of buffer,in
R11651 T16281 T16280 arg1Of buffer,lysis
R11652 T16281 T16282 arg1Of buffer,(
R11653 T16285 T16282 arg2Of buffer,(
R11654 T16285 T16283 arg1Of buffer,ACK
R11655 T16285 T16284 arg1Of buffer,lysing
R11656 T16285 T16286 arg1Of buffer,","
R11657 T16287 T16286 arg2Of LONZA,","
R11658 T16288 T16282 arg3Of ),(
R11659 T16290 T16289 arg1Of remove,to
R11660 T16293 T16290 arg2Of cells,remove
R11661 T16293 T16291 arg1Of cells,red
R11662 T16293 T16292 arg1Of cells,blood

UBERON-AE

Id Subject Object Predicate Lexical cue
T16195 192-197 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T16210 138-143 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

GO-CC

Id Subject Object Predicate Lexical cue
T16212 89-93 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T16200 0-204 Sentence denotes Spleen and tumor biopsies were briefly homogenized mechanically in PBS, filtered (100 µm cell strainer; BD PharMingen) and then placed in lysis buffer (ACK lysing buffer, LONZA) to remove red blood cells.
T255 0-204 Sentence denotes Spleen and tumor biopsies were briefly homogenized mechanically in PBS, filtered (100 µm cell strainer; BD PharMingen) and then placed in lysis buffer (ACK lysing buffer, LONZA) to remove red blood cells.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16719 82-102 Entity denotes 100 µm cell strainer
T16715 152-177 Protein denotes ACK lysing buffer, LONZA)
T16710 188-203 Entity denotes red blood cells
T16700 156-162 Protein denotes lysing

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16527 144-150 NN denotes buffer
T16526 138-143 NN denotes lysis
T16525 135-137 IN denotes in
T16524 128-134 VBN denotes placed
T16523 123-127 RB denotes then
T16522 119-122 CC denotes and
T16521 117-118 -RRB- denotes )
T16520 107-117 NNP denotes PharMingen
T16519 104-106 NNP denotes BD
T16518 102-103 : denotes ;
T16517 94-102 NN denotes strainer
T16516 89-93 NN denotes cell
T16515 86-88 NN denotes µm
T16514 82-85 CD denotes 100
T16513 81-82 -LRB- denotes (
T16512 72-80 VBN denotes filtered
T16511 70-71 , denotes ,
T16510 67-70 NNP denotes PBS
T16509 64-66 IN denotes in
T16508 51-63 RB denotes mechanically
T16507 39-50 VBN denotes homogenized
T16506 31-38 RB denotes briefly
T16505 26-30 VBD denotes were
T16504 17-25 NNS denotes biopsies
T16503 11-16 NN denotes tumor
T16502 7-10 CC denotes and
T16501 0-6 NNP denotes Spleen
T16540 203-204 . denotes .
T16539 198-203 NNS denotes cells
T16538 192-197 NN denotes blood
T16537 188-191 JJ denotes red
T16536 181-187 VB denotes remove
T16535 178-180 TO denotes to
T16534 176-177 -RRB- denotes )
T16533 171-176 NNP denotes LONZA
T16532 169-170 , denotes ,
T16531 163-169 NN denotes buffer
T16530 156-162 VBG denotes lysing
T16529 152-155 NNP denotes ACK
T16528 151-152 -LRB- denotes (
R11847 T16501 T16507 nsubjpass Spleen,homogenized
R11848 T16502 T16501 cc and,Spleen
R11849 T16503 T16504 compound tumor,biopsies
R11850 T16504 T16501 conj biopsies,Spleen
R11851 T16505 T16507 auxpass were,homogenized
R11852 T16506 T16507 advmod briefly,homogenized
R11853 T16507 T16524 ccomp homogenized,placed
R11854 T16508 T16507 advmod mechanically,homogenized
R11855 T16509 T16507 prep in,homogenized
R11856 T16510 T16509 pobj PBS,in
R11857 T16511 T16507 punct ",",homogenized
R11858 T16512 T16507 conj filtered,homogenized
R11859 T16513 T16517 punct (,strainer
R11860 T16514 T16517 nummod 100,strainer
R11861 T16515 T16517 compound µm,strainer
R11862 T16516 T16517 compound cell,strainer
R11863 T16517 T16512 appos strainer,filtered
R11864 T16518 T16524 punct ;,placed
R11865 T16519 T16520 compound BD,PharMingen
R11866 T16520 T16524 nsubj PharMingen,placed
R11867 T16521 T16520 punct ),PharMingen
R11868 T16522 T16520 cc and,PharMingen
R11869 T16523 T16524 advmod then,placed
R11870 T16524 T16524 ROOT placed,placed
R11871 T16525 T16524 prep in,placed
R11872 T16526 T16527 compound lysis,buffer
R11873 T16527 T16525 pobj buffer,in
R11874 T16528 T16531 punct (,buffer
R11875 T16529 T16531 compound ACK,buffer
R11876 T16530 T16531 compound lysing,buffer
R11877 T16531 T16527 appos buffer,buffer
R11878 T16532 T16531 punct ",",buffer
R11879 T16533 T16531 appos LONZA,buffer
R11880 T16534 T16531 punct ),buffer
R11881 T16535 T16536 aux to,remove
R11882 T16536 T16524 advcl remove,placed
R11883 T16537 T16539 amod red,cells
R11884 T16538 T16539 compound blood,cells
R11885 T16539 T16536 dobj cells,remove
R11886 T16540 T16524 punct .,placed