PMC:3342329 / 295-518
Annnotations
test3
{"project":"test3","denotations":[{"id":"T92","span":{"begin":191,"end":195},"obj":"Protein"},{"id":"T91","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T90","span":{"begin":75,"end":79},"obj":"Protein"},{"id":"T89","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T88","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T67","span":{"begin":191,"end":195},"obj":"Protein"},{"id":"T66","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T65","span":{"begin":75,"end":79},"obj":"Protein"},{"id":"T64","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T63","span":{"begin":31,"end":35},"obj":"Protein"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
testone
{"project":"testone","denotations":[{"id":"T31","span":{"begin":191,"end":195},"obj":"Protein"},{"id":"T30","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T29","span":{"begin":75,"end":79},"obj":"Protein"},{"id":"T28","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T27","span":{"begin":31,"end":35},"obj":"Protein"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T639","span":{"begin":36,"end":44},"obj":"Negative_regulation"},{"id":"T623","span":{"begin":191,"end":195},"obj":"Protein"},{"id":"T622","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T621","span":{"begin":75,"end":79},"obj":"Protein"},{"id":"T620","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T619","span":{"begin":31,"end":35},"obj":"Protein"}],"relations":[{"id":"R340","pred":"themeOf","subj":"T619","obj":"T639"},{"id":"R341","pred":"themeOf","subj":"T620","obj":"T639"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T765","span":{"begin":36,"end":44},"obj":"Negative_regulation"},{"id":"T749","span":{"begin":191,"end":195},"obj":"Protein"},{"id":"T748","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T747","span":{"begin":75,"end":79},"obj":"Protein"},{"id":"T746","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T745","span":{"begin":31,"end":35},"obj":"Protein"}],"relations":[{"id":"R409","pred":"themeOf","subj":"T745","obj":"T765"},{"id":"R410","pred":"themeOf","subj":"T746","obj":"T765"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T301","span":{"begin":28,"end":30},"obj":"IN"},{"id":"T300","span":{"begin":21,"end":27},"obj":"NN"},{"id":"T299","span":{"begin":12,"end":20},"obj":"NN"},{"id":"T298","span":{"begin":3,"end":11},"obj":"VB"},{"id":"T297","span":{"begin":0,"end":2},"obj":"PRP"},{"id":"T335","span":{"begin":208,"end":220},"obj":"VB"},{"id":"T334","span":{"begin":205,"end":207},"obj":"PRP"},{"id":"T333","span":{"begin":199,"end":203},"obj":"NN"},{"id":"T332","span":{"begin":191,"end":198},"obj":"JJ"},{"id":"T331","span":{"begin":188,"end":190},"obj":"TO"},{"id":"T330","span":{"begin":179,"end":187},"obj":"VB"},{"id":"T329","span":{"begin":174,"end":178},"obj":"WRB"},{"id":"T328","span":{"begin":169,"end":173},"obj":"NN"},{"id":"T327","span":{"begin":160,"end":168},"obj":"NN"},{"id":"T326","span":{"begin":150,"end":159},"obj":"VB"},{"id":"T325","span":{"begin":146,"end":149},"obj":"CC"},{"id":"T324","span":{"begin":144,"end":145},"obj":"-COMMA-"},{"id":"T323","span":{"begin":138,"end":144},"obj":"NN"},{"id":"T322","span":{"begin":132,"end":137},"obj":"NN"},{"id":"T321","span":{"begin":130,"end":131},"obj":"-COMMA-"},{"id":"T320","span":{"begin":124,"end":130},"obj":"NN"},{"id":"T319","span":{"begin":118,"end":123},"obj":"NN"},{"id":"T318","span":{"begin":110,"end":117},"obj":"VB"},{"id":"T317","span":{"begin":103,"end":109},"obj":"VB"},{"id":"T316","span":{"begin":98,"end":102},"obj":"NN"},{"id":"T315","span":{"begin":90,"end":97},"obj":"NN"},{"id":"T314","span":{"begin":84,"end":88},"obj":"NN"},{"id":"T313","span":{"begin":82,"end":83},"obj":"-RRB-"},{"id":"T312","span":{"begin":75,"end":82},"obj":"NN"},{"id":"T311","span":{"begin":74,"end":75},"obj":"-LRB-"},{"id":"T310","span":{"begin":69,"end":73},"obj":"NN"},{"id":"T309","span":{"begin":64,"end":68},"obj":"JJ"},{"id":"T308","span":{"begin":60,"end":63},"obj":"CC"},{"id":"T307","span":{"begin":55,"end":59},"obj":"NN"},{"id":"T306","span":{"begin":53,"end":54},"obj":"-RRB-"},{"id":"T305","span":{"begin":46,"end":53},"obj":"NN"},{"id":"T304","span":{"begin":45,"end":46},"obj":"-LRB-"},{"id":"T303","span":{"begin":36,"end":44},"obj":"NN"},{"id":"T302","span":{"begin":31,"end":35},"obj":"NN"}],"relations":[{"id":"R78","pred":"arg1Of","subj":"T297","obj":"T298"},{"id":"R81","pred":"arg2Of","subj":"T300","obj":"T298"},{"id":"R82","pred":"arg1Of","subj":"T300","obj":"T299"},{"id":"R83","pred":"arg1Of","subj":"T300","obj":"T301"},{"id":"R84","pred":"arg1Of","subj":"T303","obj":"T302"},{"id":"R85","pred":"arg1Of","subj":"T303","obj":"T304"},{"id":"R86","pred":"arg2Of","subj":"T305","obj":"T304"},{"id":"R87","pred":"arg3Of","subj":"T306","obj":"T304"},{"id":"R88","pred":"arg1Of","subj":"T307","obj":"T303"},{"id":"R89","pred":"arg1Of","subj":"T307","obj":"T308"},{"id":"R90","pred":"arg2Of","subj":"T308","obj":"T301"},{"id":"R91","pred":"arg1Of","subj":"T310","obj":"T309"},{"id":"R92","pred":"arg1Of","subj":"T310","obj":"T311"},{"id":"R93","pred":"arg2Of","subj":"T312","obj":"T311"},{"id":"R94","pred":"arg3Of","subj":"T313","obj":"T311"},{"id":"R95","pred":"arg2Of","subj":"T314","obj":"T308"},{"id":"R96","pred":"arg1Of","subj":"T314","obj":"T310"},{"id":"R97","pred":"arg1Of","subj":"T316","obj":"T315"},{"id":"R98","pred":"arg1Of","subj":"T316","obj":"T317"},{"id":"R99","pred":"arg1Of","subj":"T316","obj":"T330"},{"id":"R100","pred":"arg1Of","subj":"T317","obj":"T329"},{"id":"R101","pred":"arg2Of","subj":"T320","obj":"T318"},{"id":"R102","pred":"arg1Of","subj":"T320","obj":"T319"},{"id":"R103","pred":"arg1Of","subj":"T320","obj":"T321"},{"id":"R104","pred":"arg1Of","subj":"T321","obj":"T325"},{"id":"R105","pred":"arg2Of","subj":"T323","obj":"T321"},{"id":"R106","pred":"arg1Of","subj":"T323","obj":"T322"},{"id":"R107","pred":"arg2Of","subj":"T325","obj":"T317"},{"id":"R108","pred":"arg1Of","subj":"T325","obj":"T324"},{"id":"R109","pred":"arg2Of","subj":"T328","obj":"T325"},{"id":"R110","pred":"arg2Of","subj":"T328","obj":"T326"},{"id":"R111","pred":"arg1Of","subj":"T328","obj":"T327"},{"id":"R112","pred":"arg2Of","subj":"T330","obj":"T329"},{"id":"R113","pred":"arg1Of","subj":"T330","obj":"T331"},{"id":"R114","pred":"arg2Of","subj":"T333","obj":"T331"},{"id":"R115","pred":"arg1Of","subj":"T333","obj":"T332"},{"id":"R116","pred":"arg1Of","subj":"T334","obj":"T335"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T173","span":{"begin":191,"end":195},"obj":"Protein"},{"id":"T172","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T171","span":{"begin":75,"end":79},"obj":"Protein"},{"id":"T170","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T169","span":{"begin":31,"end":35},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T539","span":{"begin":191,"end":195},"obj":"http://www.uniprot.org/uniprot/P51681"},{"id":"T538","span":{"begin":90,"end":94},"obj":"http://www.uniprot.org/uniprot/P51681"},{"id":"T537","span":{"begin":75,"end":79},"obj":"http://www.uniprot.org/uniprot/P51681"},{"id":"T536","span":{"begin":46,"end":50},"obj":"http://www.uniprot.org/uniprot/P51681"},{"id":"T535","span":{"begin":31,"end":35},"obj":"http://www.uniprot.org/uniprot/P51681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T188","span":{"begin":21,"end":27},"obj":"http://purl.obolibrary.org/obo/GO_0040007"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
sentences
{"project":"sentences","denotations":[{"id":"T122","span":{"begin":90,"end":204},"obj":"Sentence"},{"id":"T5","span":{"begin":90,"end":204},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
simple1
{"project":"simple1","denotations":[{"id":"T246","span":{"begin":191,"end":195},"obj":"Protein"},{"id":"T245","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T244","span":{"begin":75,"end":79},"obj":"Protein"},{"id":"T243","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T242","span":{"begin":31,"end":35},"obj":"Protein"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T579","span":{"begin":36,"end":44},"obj":"Negative_regulation"},{"id":"T563","span":{"begin":191,"end":195},"obj":"Protein"},{"id":"T562","span":{"begin":90,"end":94},"obj":"Protein"},{"id":"T561","span":{"begin":75,"end":79},"obj":"Protein"},{"id":"T560","span":{"begin":46,"end":50},"obj":"Protein"},{"id":"T559","span":{"begin":31,"end":35},"obj":"Protein"}],"relations":[{"id":"R316","pred":"themeOf","subj":"T559","obj":"T579"},{"id":"R317","pred":"themeOf","subj":"T560","obj":"T579"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T802","span":{"begin":188,"end":203},"obj":"Protein"},{"id":"T800","span":{"begin":55,"end":59},"obj":"Protein"},{"id":"T796","span":{"begin":55,"end":88},"obj":"Protein"},{"id":"T794","span":{"begin":98,"end":102},"obj":"Protein"},{"id":"T786","span":{"begin":31,"end":35},"obj":"Protein"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T911","span":{"begin":208,"end":220},"obj":"VBD"},{"id":"T910","span":{"begin":205,"end":207},"obj":"PRP"},{"id":"T909","span":{"begin":203,"end":204},"obj":"."},{"id":"T908","span":{"begin":199,"end":203},"obj":"NNS"},{"id":"T907","span":{"begin":197,"end":198},"obj":"NN"},{"id":"T906","span":{"begin":196,"end":197},"obj":"NN"},{"id":"T905","span":{"begin":195,"end":196},"obj":"CD"},{"id":"T904","span":{"begin":191,"end":195},"obj":"CD"},{"id":"T903","span":{"begin":188,"end":190},"obj":"TO"},{"id":"T902","span":{"begin":179,"end":187},"obj":"VBN"},{"id":"T901","span":{"begin":174,"end":178},"obj":"WRB"},{"id":"T900","span":{"begin":169,"end":173},"obj":"NN"},{"id":"T899","span":{"begin":160,"end":168},"obj":"NN"},{"id":"T898","span":{"begin":150,"end":159},"obj":"VBD"},{"id":"T897","span":{"begin":146,"end":149},"obj":"CC"},{"id":"T896","span":{"begin":144,"end":145},"obj":","},{"id":"T895","span":{"begin":138,"end":144},"obj":"NN"},{"id":"T894","span":{"begin":132,"end":137},"obj":"NN"},{"id":"T893","span":{"begin":130,"end":131},"obj":","},{"id":"T892","span":{"begin":124,"end":130},"obj":"NN"},{"id":"T891","span":{"begin":118,"end":123},"obj":"NN"},{"id":"T890","span":{"begin":110,"end":117},"obj":"VBN"},{"id":"T889","span":{"begin":103,"end":109},"obj":"VBD"},{"id":"T888","span":{"begin":98,"end":102},"obj":"NNS"},{"id":"T887","span":{"begin":96,"end":97},"obj":"NN"},{"id":"T886","span":{"begin":95,"end":96},"obj":"NN"},{"id":"T885","span":{"begin":94,"end":95},"obj":"CD"},{"id":"T884","span":{"begin":90,"end":94},"obj":"CD"},{"id":"T883","span":{"begin":88,"end":89},"obj":"."},{"id":"T882","span":{"begin":84,"end":88},"obj":"NNS"},{"id":"T881","span":{"begin":82,"end":83},"obj":"-RRB-"},{"id":"T880","span":{"begin":81,"end":82},"obj":"NN"},{"id":"T879","span":{"begin":80,"end":81},"obj":"NN"},{"id":"T878","span":{"begin":79,"end":80},"obj":"CD"},{"id":"T877","span":{"begin":75,"end":79},"obj":"CD"},{"id":"T876","span":{"begin":74,"end":75},"obj":"-LRB-"},{"id":"T875","span":{"begin":69,"end":73},"obj":"NN"},{"id":"T874","span":{"begin":64,"end":68},"obj":"JJ"},{"id":"T873","span":{"begin":60,"end":63},"obj":"CC"},{"id":"T872","span":{"begin":55,"end":59},"obj":"NNS"},{"id":"T871","span":{"begin":53,"end":54},"obj":"-RRB-"},{"id":"T870","span":{"begin":52,"end":53},"obj":"NN"},{"id":"T869","span":{"begin":51,"end":52},"obj":"NN"},{"id":"T868","span":{"begin":50,"end":51},"obj":"CD"},{"id":"T867","span":{"begin":46,"end":50},"obj":"CD"},{"id":"T866","span":{"begin":45,"end":46},"obj":"-LRB-"},{"id":"T865","span":{"begin":36,"end":44},"obj":"NN"},{"id":"T864","span":{"begin":31,"end":35},"obj":"CD"},{"id":"T863","span":{"begin":28,"end":30},"obj":"IN"},{"id":"T862","span":{"begin":21,"end":27},"obj":"NN"},{"id":"T861","span":{"begin":12,"end":20},"obj":"NN"},{"id":"T860","span":{"begin":3,"end":11},"obj":"VBD"},{"id":"T859","span":{"begin":0,"end":2},"obj":"PRP"}],"relations":[{"id":"R464","pred":"nsubj","subj":"T859","obj":"T860"},{"id":"R465","pred":"ROOT","subj":"T860","obj":"T860"},{"id":"R466","pred":"compound","subj":"T861","obj":"T862"},{"id":"R467","pred":"dobj","subj":"T862","obj":"T860"},{"id":"R468","pred":"prep","subj":"T863","obj":"T862"},{"id":"R469","pred":"nummod","subj":"T864","obj":"T865"},{"id":"R470","pred":"pobj","subj":"T865","obj":"T863"},{"id":"R471","pred":"punct","subj":"T866","obj":"T865"},{"id":"R472","pred":"nummod","subj":"T867","obj":"T868"},{"id":"R473","pred":"nummod","subj":"T868","obj":"T870"},{"id":"R474","pred":"compound","subj":"T869","obj":"T870"},{"id":"R475","pred":"appos","subj":"T870","obj":"T865"},{"id":"R476","pred":"punct","subj":"T871","obj":"T865"},{"id":"R477","pred":"pobj","subj":"T872","obj":"T863"},{"id":"R478","pred":"cc","subj":"T873","obj":"T872"},{"id":"R479","pred":"amod","subj":"T874","obj":"T875"},{"id":"R480","pred":"conj","subj":"T875","obj":"T872"},{"id":"R481","pred":"punct","subj":"T876","obj":"T880"},{"id":"R482","pred":"nummod","subj":"T877","obj":"T880"},{"id":"R483","pred":"nummod","subj":"T878","obj":"T880"},{"id":"R484","pred":"compound","subj":"T879","obj":"T880"},{"id":"R485","pred":"appos","subj":"T880","obj":"T875"},{"id":"R486","pred":"punct","subj":"T881","obj":"T880"},{"id":"R487","pred":"conj","subj":"T882","obj":"T875"},{"id":"R488","pred":"punct","subj":"T883","obj":"T860"},{"id":"R489","pred":"nummod","subj":"T884","obj":"T888"},{"id":"R490","pred":"nummod","subj":"T885","obj":"T888"},{"id":"R491","pred":"compound","subj":"T886","obj":"T888"},{"id":"R492","pred":"compound","subj":"T887","obj":"T888"},{"id":"R493","pred":"nsubj","subj":"T888","obj":"T889"},{"id":"R494","pred":"ROOT","subj":"T889","obj":"T889"},{"id":"R495","pred":"amod","subj":"T890","obj":"T892"},{"id":"R496","pred":"compound","subj":"T891","obj":"T892"},{"id":"R497","pred":"dobj","subj":"T892","obj":"T889"},{"id":"R498","pred":"punct","subj":"T893","obj":"T892"},{"id":"R499","pred":"compound","subj":"T894","obj":"T895"},{"id":"R500","pred":"conj","subj":"T895","obj":"T892"},{"id":"R501","pred":"punct","subj":"T896","obj":"T889"},{"id":"R502","pred":"cc","subj":"T897","obj":"T889"},{"id":"R503","pred":"amod","subj":"T898","obj":"T900"},{"id":"R504","pred":"compound","subj":"T899","obj":"T900"},{"id":"R505","pred":"dobj","subj":"T900","obj":"T902"},{"id":"R506","pred":"advmod","subj":"T901","obj":"T902"},{"id":"R507","pred":"conj","subj":"T902","obj":"T889"},{"id":"R508","pred":"prep","subj":"T903","obj":"T902"},{"id":"R509","pred":"nummod","subj":"T904","obj":"T908"},{"id":"R510","pred":"nummod","subj":"T905","obj":"T908"},{"id":"R511","pred":"compound","subj":"T906","obj":"T908"},{"id":"R512","pred":"compound","subj":"T907","obj":"T908"},{"id":"R513","pred":"pobj","subj":"T908","obj":"T903"},{"id":"R514","pred":"punct","subj":"T909","obj":"T889"},{"id":"R515","pred":"nsubj","subj":"T910","obj":"T911"},{"id":"R516","pred":"ROOT","subj":"T911","obj":"T911"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T653","span":{"begin":191,"end":195},"obj":"Protein"},{"id":"T650","span":{"begin":31,"end":35},"obj":"Protein"}],"text":"we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice. CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice. We investigated th"}