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PMC:3342329 / 295-518 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T92 191-195 Protein denotes CCR5
T91 90-94 Protein denotes CCR5
T90 75-79 Protein denotes CCR5
T89 46-50 Protein denotes CCR5
T88 31-35 Protein denotes CCR5
T67 191-195 Protein denotes CCR5
T66 90-94 Protein denotes CCR5
T65 75-79 Protein denotes CCR5
T64 46-50 Protein denotes CCR5
T63 31-35 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T31 191-195 Protein denotes CCR5
T30 90-94 Protein denotes CCR5
T29 75-79 Protein denotes CCR5
T28 46-50 Protein denotes CCR5
T27 31-35 Protein denotes CCR5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T639 36-44 Negative_regulation denotes knockout
T623 191-195 Protein denotes CCR5
T622 90-94 Protein denotes CCR5
T621 75-79 Protein denotes CCR5
T620 46-50 Protein denotes CCR5
T619 31-35 Protein denotes CCR5
R340 T619 T639 themeOf CCR5,knockout
R341 T620 T639 themeOf CCR5,knockout

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T765 36-44 Negative_regulation denotes knockout
T749 191-195 Protein denotes CCR5
T748 90-94 Protein denotes CCR5
T747 75-79 Protein denotes CCR5
T746 46-50 Protein denotes CCR5
T745 31-35 Protein denotes CCR5
R409 T745 T765 themeOf CCR5,knockout
R410 T746 T765 themeOf CCR5,knockout

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T301 28-30 IN denotes in
T300 21-27 NN denotes growth
T299 12-20 NN denotes melanoma
T298 3-11 VB denotes compared
T297 0-2 PRP denotes we
T335 208-220 VB denotes investigated
T334 205-207 PRP denotes We
T333 199-203 NN denotes mice
T332 191-198 JJ denotes CCR5+/+
T331 188-190 TO denotes to
T330 179-187 VB denotes compared
T329 174-178 WRB denotes when
T328 169-173 NN denotes rate
T327 160-168 NN denotes survival
T326 150-159 VB denotes increased
T325 146-149 CC denotes and
T324 144-145 -COMMA- denotes ,
T323 138-144 NN denotes weight
T322 132-137 NN denotes tumor
T321 130-131 -COMMA- denotes ,
T320 124-130 NN denotes volume
T319 118-123 NN denotes tumor
T318 110-117 VB denotes reduced
T317 103-109 VB denotes showed
T316 98-102 NN denotes mice
T315 90-97 NN denotes CCR5−/−
T314 84-88 NN denotes mice
T313 82-83 -RRB- denotes )
T312 75-82 NN denotes CCR5+/+
T311 74-75 -LRB- denotes (
T310 69-73 NN denotes type
T309 64-68 JJ denotes wild
T308 60-63 CC denotes and
T307 55-59 NN denotes mice
T306 53-54 -RRB- denotes )
T305 46-53 NN denotes CCR5−/−
T304 45-46 -LRB- denotes (
T303 36-44 NN denotes knockout
T302 31-35 NN denotes CCR5
R78 T297 T298 arg1Of we,compared
R81 T300 T298 arg2Of growth,compared
R82 T300 T299 arg1Of growth,melanoma
R83 T300 T301 arg1Of growth,in
R84 T303 T302 arg1Of knockout,CCR5
R85 T303 T304 arg1Of knockout,(
R86 T305 T304 arg2Of CCR5−/−,(
R87 T306 T304 arg3Of ),(
R88 T307 T303 arg1Of mice,knockout
R89 T307 T308 arg1Of mice,and
R90 T308 T301 arg2Of and,in
R91 T310 T309 arg1Of type,wild
R92 T310 T311 arg1Of type,(
R93 T312 T311 arg2Of CCR5+/+,(
R94 T313 T311 arg3Of ),(
R95 T314 T308 arg2Of mice,and
R96 T314 T310 arg1Of mice,type
R97 T316 T315 arg1Of mice,CCR5−/−
R98 T316 T317 arg1Of mice,showed
R99 T316 T330 arg1Of mice,compared
R100 T317 T329 arg1Of showed,when
R101 T320 T318 arg2Of volume,reduced
R102 T320 T319 arg1Of volume,tumor
R103 T320 T321 arg1Of volume,","
R104 T321 T325 arg1Of ",",and
R105 T323 T321 arg2Of weight,","
R106 T323 T322 arg1Of weight,tumor
R107 T325 T317 arg2Of and,showed
R108 T325 T324 arg1Of and,","
R109 T328 T325 arg2Of rate,and
R110 T328 T326 arg2Of rate,increased
R111 T328 T327 arg1Of rate,survival
R112 T330 T329 arg2Of compared,when
R113 T330 T331 arg1Of compared,to
R114 T333 T331 arg2Of mice,to
R115 T333 T332 arg1Of mice,CCR5+/+
R116 T334 T335 arg1Of We,investigated

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T173 191-195 Protein denotes CCR5
T172 90-94 Protein denotes CCR5
T171 75-79 Protein denotes CCR5
T170 46-50 Protein denotes CCR5
T169 31-35 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 191-195 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T538 90-94 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T537 75-79 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T536 46-50 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T535 31-35 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T188 21-27 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

sentences

Id Subject Object Predicate Lexical cue
T122 90-204 Sentence denotes CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice.
T5 90-204 Sentence denotes CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice.

simple1

Id Subject Object Predicate Lexical cue
T246 191-195 Protein denotes CCR5
T245 90-94 Protein denotes CCR5
T244 75-79 Protein denotes CCR5
T243 46-50 Protein denotes CCR5
T242 31-35 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T579 36-44 Negative_regulation denotes knockout
T563 191-195 Protein denotes CCR5
T562 90-94 Protein denotes CCR5
T561 75-79 Protein denotes CCR5
T560 46-50 Protein denotes CCR5
T559 31-35 Protein denotes CCR5
R316 T559 T579 themeOf CCR5,knockout
R317 T560 T579 themeOf CCR5,knockout

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T802 188-203 Protein denotes to CCR5+/+ mice
T800 55-59 Protein denotes mice
T796 55-88 Protein denotes mice and wild type (CCR5+/+) mice
T794 98-102 Protein denotes mice
T786 31-35 Protein denotes CCR5

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T911 208-220 VBD denotes investigated
T910 205-207 PRP denotes We
T909 203-204 . denotes .
T908 199-203 NNS denotes mice
T907 197-198 NN denotes +
T906 196-197 NN denotes /
T905 195-196 CD denotes +
T904 191-195 CD denotes CCR5
T903 188-190 TO denotes to
T902 179-187 VBN denotes compared
T901 174-178 WRB denotes when
T900 169-173 NN denotes rate
T899 160-168 NN denotes survival
T898 150-159 VBD denotes increased
T897 146-149 CC denotes and
T896 144-145 , denotes ,
T895 138-144 NN denotes weight
T894 132-137 NN denotes tumor
T893 130-131 , denotes ,
T892 124-130 NN denotes volume
T891 118-123 NN denotes tumor
T890 110-117 VBN denotes reduced
T889 103-109 VBD denotes showed
T888 98-102 NNS denotes mice
T887 96-97 NN denotes −
T886 95-96 NN denotes /
T885 94-95 CD denotes −
T884 90-94 CD denotes CCR5
T883 88-89 . denotes .
T882 84-88 NNS denotes mice
T881 82-83 -RRB- denotes )
T880 81-82 NN denotes +
T879 80-81 NN denotes /
T878 79-80 CD denotes +
T877 75-79 CD denotes CCR5
T876 74-75 -LRB- denotes (
T875 69-73 NN denotes type
T874 64-68 JJ denotes wild
T873 60-63 CC denotes and
T872 55-59 NNS denotes mice
T871 53-54 -RRB- denotes )
T870 52-53 NN denotes −
T869 51-52 NN denotes /
T868 50-51 CD denotes −
T867 46-50 CD denotes CCR5
T866 45-46 -LRB- denotes (
T865 36-44 NN denotes knockout
T864 31-35 CD denotes CCR5
T863 28-30 IN denotes in
T862 21-27 NN denotes growth
T861 12-20 NN denotes melanoma
T860 3-11 VBD denotes compared
T859 0-2 PRP denotes we
R464 T859 T860 nsubj we,compared
R465 T860 T860 ROOT compared,compared
R466 T861 T862 compound melanoma,growth
R467 T862 T860 dobj growth,compared
R468 T863 T862 prep in,growth
R469 T864 T865 nummod CCR5,knockout
R470 T865 T863 pobj knockout,in
R471 T866 T865 punct (,knockout
R472 T867 T868 nummod CCR5,−
R473 T868 T870 nummod −,−
R474 T869 T870 compound /,−
R475 T870 T865 appos −,knockout
R476 T871 T865 punct ),knockout
R477 T872 T863 pobj mice,in
R478 T873 T872 cc and,mice
R479 T874 T875 amod wild,type
R480 T875 T872 conj type,mice
R481 T876 T880 punct (,+
R482 T877 T880 nummod CCR5,+
R483 T878 T880 nummod +,+
R484 T879 T880 compound /,+
R485 T880 T875 appos +,type
R486 T881 T880 punct ),+
R487 T882 T875 conj mice,type
R488 T883 T860 punct .,compared
R489 T884 T888 nummod CCR5,mice
R490 T885 T888 nummod −,mice
R491 T886 T888 compound /,mice
R492 T887 T888 compound −,mice
R493 T888 T889 nsubj mice,showed
R494 T889 T889 ROOT showed,showed
R495 T890 T892 amod reduced,volume
R496 T891 T892 compound tumor,volume
R497 T892 T889 dobj volume,showed
R498 T893 T892 punct ",",volume
R499 T894 T895 compound tumor,weight
R500 T895 T892 conj weight,volume
R501 T896 T889 punct ",",showed
R502 T897 T889 cc and,showed
R503 T898 T900 amod increased,rate
R504 T899 T900 compound survival,rate
R505 T900 T902 dobj rate,compared
R506 T901 T902 advmod when,compared
R507 T902 T889 conj compared,showed
R508 T903 T902 prep to,compared
R509 T904 T908 nummod CCR5,mice
R510 T905 T908 nummod +,mice
R511 T906 T908 compound /,mice
R512 T907 T908 compound +,mice
R513 T908 T903 pobj mice,to
R514 T909 T889 punct .,showed
R515 T910 T911 nsubj We,investigated
R516 T911 T911 ROOT investigated,investigated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T653 191-195 Protein denotes CCR5
T650 31-35 Protein denotes CCR5