PMC:3342329 / 195-384
Annnotations
test3
{"project":"test3","denotations":[{"id":"T90","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T89","span":{"begin":146,"end":150},"obj":"Protein"},{"id":"T88","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T87","span":{"begin":66,"end":76},"obj":"Gene_expression"},{"id":"T86","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T85","span":{"begin":29,"end":58},"obj":"Protein"},{"id":"T65","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T64","span":{"begin":146,"end":150},"obj":"Protein"},{"id":"T63","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T62","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T61","span":{"begin":29,"end":58},"obj":"Protein"}],"relations":[{"id":"R17","pred":"themeOf","subj":"T85","obj":"T87"},{"id":"R18","pred":"equivalentTo","subj":"T86","obj":"T85"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
testone
{"project":"testone","denotations":[{"id":"T29","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T28","span":{"begin":146,"end":150},"obj":"Protein"},{"id":"T27","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T26","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T25","span":{"begin":29,"end":58},"obj":"Protein"},{"id":"T47","span":{"begin":66,"end":76},"obj":"Gene_expression"}],"relations":[{"id":"R3","pred":"themeOf","subj":"T25","obj":"T47"},{"id":"R4","pred":"equivalentTo","subj":"T26","obj":"T25"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T640","span":{"begin":66,"end":76},"obj":"Gene_expression"},{"id":"T639","span":{"begin":136,"end":144},"obj":"Negative_regulation"},{"id":"T621","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T620","span":{"begin":146,"end":150},"obj":"Protein"},{"id":"T619","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T618","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T617","span":{"begin":29,"end":58},"obj":"Protein"}],"relations":[{"id":"R338","pred":"themeOf","subj":"T617","obj":"T640"},{"id":"R339","pred":"themeOf","subj":"T618","obj":"T640"},{"id":"R340","pred":"themeOf","subj":"T619","obj":"T639"},{"id":"R341","pred":"themeOf","subj":"T620","obj":"T639"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T766","span":{"begin":66,"end":76},"obj":"Gene_expression"},{"id":"T765","span":{"begin":136,"end":144},"obj":"Negative_regulation"},{"id":"T747","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T746","span":{"begin":146,"end":150},"obj":"Protein"},{"id":"T745","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T744","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T743","span":{"begin":29,"end":58},"obj":"Protein"}],"relations":[{"id":"R407","pred":"themeOf","subj":"T743","obj":"T766"},{"id":"R408","pred":"themeOf","subj":"T744","obj":"T766"},{"id":"R409","pred":"themeOf","subj":"T745","obj":"T765"},{"id":"R410","pred":"themeOf","subj":"T746","obj":"T765"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T301","span":{"begin":128,"end":130},"obj":"IN"},{"id":"T300","span":{"begin":121,"end":127},"obj":"NN"},{"id":"T299","span":{"begin":112,"end":120},"obj":"NN"},{"id":"T298","span":{"begin":103,"end":111},"obj":"VB"},{"id":"T297","span":{"begin":100,"end":102},"obj":"PRP"},{"id":"T296","span":{"begin":98,"end":99},"obj":"-COMMA-"},{"id":"T295","span":{"begin":87,"end":98},"obj":"NN"},{"id":"T294","span":{"begin":81,"end":86},"obj":"NN"},{"id":"T293","span":{"begin":77,"end":80},"obj":"CC"},{"id":"T292","span":{"begin":66,"end":76},"obj":"NN"},{"id":"T291","span":{"begin":64,"end":65},"obj":"-RRB-"},{"id":"T290","span":{"begin":60,"end":64},"obj":"NN"},{"id":"T289","span":{"begin":59,"end":60},"obj":"-LRB-"},{"id":"T288","span":{"begin":57,"end":58},"obj":"CD"},{"id":"T287","span":{"begin":52,"end":56},"obj":"NN"},{"id":"T286","span":{"begin":43,"end":51},"obj":"NN"},{"id":"T285","span":{"begin":33,"end":42},"obj":"NN"},{"id":"T284","span":{"begin":29,"end":32},"obj":"NN"},{"id":"T283","span":{"begin":26,"end":28},"obj":"IN"},{"id":"T282","span":{"begin":16,"end":25},"obj":"NN"},{"id":"T281","span":{"begin":12,"end":15},"obj":"DT"},{"id":"T280","span":{"begin":3,"end":11},"obj":"VB"},{"id":"T279","span":{"begin":0,"end":2},"obj":"TO"},{"id":"T314","span":{"begin":184,"end":188},"obj":"NN"},{"id":"T313","span":{"begin":182,"end":183},"obj":"-RRB-"},{"id":"T312","span":{"begin":175,"end":182},"obj":"NN"},{"id":"T311","span":{"begin":174,"end":175},"obj":"-LRB-"},{"id":"T310","span":{"begin":169,"end":173},"obj":"NN"},{"id":"T309","span":{"begin":164,"end":168},"obj":"JJ"},{"id":"T308","span":{"begin":160,"end":163},"obj":"CC"},{"id":"T307","span":{"begin":155,"end":159},"obj":"NN"},{"id":"T306","span":{"begin":153,"end":154},"obj":"-RRB-"},{"id":"T305","span":{"begin":146,"end":153},"obj":"NN"},{"id":"T304","span":{"begin":145,"end":146},"obj":"-LRB-"},{"id":"T303","span":{"begin":136,"end":144},"obj":"NN"},{"id":"T302","span":{"begin":131,"end":135},"obj":"NN"}],"relations":[{"id":"R61","pred":"arg1Of","subj":"T280","obj":"T279"},{"id":"R62","pred":"arg2Of","subj":"T282","obj":"T280"},{"id":"R63","pred":"arg1Of","subj":"T282","obj":"T281"},{"id":"R64","pred":"arg1Of","subj":"T282","obj":"T283"},{"id":"R65","pred":"arg2Of","subj":"T290","obj":"T289"},{"id":"R66","pred":"arg3Of","subj":"T291","obj":"T289"},{"id":"R67","pred":"arg1Of","subj":"T292","obj":"T284"},{"id":"R68","pred":"arg1Of","subj":"T292","obj":"T285"},{"id":"R69","pred":"arg1Of","subj":"T292","obj":"T286"},{"id":"R70","pred":"arg1Of","subj":"T292","obj":"T287"},{"id":"R71","pred":"arg1Of","subj":"T292","obj":"T288"},{"id":"R72","pred":"arg1Of","subj":"T292","obj":"T289"},{"id":"R73","pred":"arg1Of","subj":"T292","obj":"T293"},{"id":"R74","pred":"arg2Of","subj":"T293","obj":"T283"},{"id":"R75","pred":"arg2Of","subj":"T295","obj":"T293"},{"id":"R76","pred":"arg1Of","subj":"T295","obj":"T294"},{"id":"R77","pred":"arg1Of","subj":"T297","obj":"T280"},{"id":"R78","pred":"arg1Of","subj":"T297","obj":"T298"},{"id":"R79","pred":"modOf","subj":"T298","obj":"T279"},{"id":"R80","pred":"arg1Of","subj":"T298","obj":"T296"},{"id":"R81","pred":"arg2Of","subj":"T300","obj":"T298"},{"id":"R82","pred":"arg1Of","subj":"T300","obj":"T299"},{"id":"R83","pred":"arg1Of","subj":"T300","obj":"T301"},{"id":"R84","pred":"arg1Of","subj":"T303","obj":"T302"},{"id":"R85","pred":"arg1Of","subj":"T303","obj":"T304"},{"id":"R86","pred":"arg2Of","subj":"T305","obj":"T304"},{"id":"R87","pred":"arg3Of","subj":"T306","obj":"T304"},{"id":"R88","pred":"arg1Of","subj":"T307","obj":"T303"},{"id":"R89","pred":"arg1Of","subj":"T307","obj":"T308"},{"id":"R90","pred":"arg2Of","subj":"T308","obj":"T301"},{"id":"R91","pred":"arg1Of","subj":"T310","obj":"T309"},{"id":"R92","pred":"arg1Of","subj":"T310","obj":"T311"},{"id":"R93","pred":"arg2Of","subj":"T312","obj":"T311"},{"id":"R94","pred":"arg3Of","subj":"T313","obj":"T311"},{"id":"R95","pred":"arg2Of","subj":"T314","obj":"T308"},{"id":"R96","pred":"arg1Of","subj":"T314","obj":"T310"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T171","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T170","span":{"begin":146,"end":150},"obj":"Protein"},{"id":"T169","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T168","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T167","span":{"begin":29,"end":58},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T537","span":{"begin":175,"end":179},"obj":"http://www.uniprot.org/uniprot/P51681"},{"id":"T536","span":{"begin":146,"end":150},"obj":"http://www.uniprot.org/uniprot/P51681"},{"id":"T535","span":{"begin":131,"end":135},"obj":"http://www.uniprot.org/uniprot/P51681"},{"id":"T534","span":{"begin":60,"end":64},"obj":"http://www.uniprot.org/uniprot/P51681"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T188","span":{"begin":121,"end":127},"obj":"http://purl.obolibrary.org/obo/GO_0040007"},{"id":"T187","span":{"begin":87,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0032502"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
sentences
{"project":"sentences","denotations":[{"id":"T121","span":{"begin":0,"end":189},"obj":"Sentence"},{"id":"T4","span":{"begin":0,"end":189},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
simple1
{"project":"simple1","denotations":[{"id":"T244","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T243","span":{"begin":146,"end":150},"obj":"Protein"},{"id":"T242","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T241","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T240","span":{"begin":29,"end":58},"obj":"Protein"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T579","span":{"begin":136,"end":144},"obj":"Negative_regulation"},{"id":"T578","span":{"begin":66,"end":76},"obj":"Gene_expression"},{"id":"T561","span":{"begin":175,"end":179},"obj":"Protein"},{"id":"T560","span":{"begin":146,"end":150},"obj":"Protein"},{"id":"T559","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T558","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T557","span":{"begin":29,"end":58},"obj":"Protein"}],"relations":[{"id":"R314","pred":"themeOf","subj":"T557","obj":"T578"},{"id":"R315","pred":"themeOf","subj":"T558","obj":"T578"},{"id":"R316","pred":"themeOf","subj":"T559","obj":"T579"},{"id":"R317","pred":"themeOf","subj":"T560","obj":"T579"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T809","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T800","span":{"begin":155,"end":159},"obj":"Protein"},{"id":"T796","span":{"begin":155,"end":188},"obj":"Protein"},{"id":"T790","span":{"begin":33,"end":42},"obj":"Protein"},{"id":"T787","span":{"begin":52,"end":65},"obj":"Protein"},{"id":"T786","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T773","span":{"begin":29,"end":76},"obj":"Protein"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T883","span":{"begin":188,"end":189},"obj":"."},{"id":"T882","span":{"begin":184,"end":188},"obj":"NNS"},{"id":"T881","span":{"begin":182,"end":183},"obj":"-RRB-"},{"id":"T880","span":{"begin":181,"end":182},"obj":"NN"},{"id":"T879","span":{"begin":180,"end":181},"obj":"NN"},{"id":"T878","span":{"begin":179,"end":180},"obj":"CD"},{"id":"T877","span":{"begin":175,"end":179},"obj":"CD"},{"id":"T876","span":{"begin":174,"end":175},"obj":"-LRB-"},{"id":"T875","span":{"begin":169,"end":173},"obj":"NN"},{"id":"T874","span":{"begin":164,"end":168},"obj":"JJ"},{"id":"T873","span":{"begin":160,"end":163},"obj":"CC"},{"id":"T872","span":{"begin":155,"end":159},"obj":"NNS"},{"id":"T871","span":{"begin":153,"end":154},"obj":"-RRB-"},{"id":"T870","span":{"begin":152,"end":153},"obj":"NN"},{"id":"T869","span":{"begin":151,"end":152},"obj":"NN"},{"id":"T868","span":{"begin":150,"end":151},"obj":"CD"},{"id":"T867","span":{"begin":146,"end":150},"obj":"CD"},{"id":"T866","span":{"begin":145,"end":146},"obj":"-LRB-"},{"id":"T865","span":{"begin":136,"end":144},"obj":"NN"},{"id":"T864","span":{"begin":131,"end":135},"obj":"CD"},{"id":"T863","span":{"begin":128,"end":130},"obj":"IN"},{"id":"T862","span":{"begin":121,"end":127},"obj":"NN"},{"id":"T861","span":{"begin":112,"end":120},"obj":"NN"},{"id":"T860","span":{"begin":103,"end":111},"obj":"VBD"},{"id":"T859","span":{"begin":100,"end":102},"obj":"PRP"},{"id":"T858","span":{"begin":98,"end":99},"obj":","},{"id":"T857","span":{"begin":87,"end":98},"obj":"NN"},{"id":"T856","span":{"begin":81,"end":86},"obj":"NN"},{"id":"T855","span":{"begin":77,"end":80},"obj":"CC"},{"id":"T854","span":{"begin":66,"end":76},"obj":"NN"},{"id":"T853","span":{"begin":64,"end":65},"obj":"-RRB-"},{"id":"T852","span":{"begin":60,"end":64},"obj":"NNS"},{"id":"T851","span":{"begin":59,"end":60},"obj":"-LRB-"},{"id":"T843","span":{"begin":12,"end":15},"obj":"DT"},{"id":"T842","span":{"begin":3,"end":11},"obj":"VB"},{"id":"T841","span":{"begin":0,"end":2},"obj":"TO"},{"id":"T850","span":{"begin":57,"end":58},"obj":"CD"},{"id":"T849","span":{"begin":52,"end":56},"obj":"NN"},{"id":"T848","span":{"begin":43,"end":51},"obj":"NN"},{"id":"T847","span":{"begin":33,"end":42},"obj":"NN"},{"id":"T846","span":{"begin":29,"end":32},"obj":"NNP"},{"id":"T845","span":{"begin":26,"end":28},"obj":"IN"},{"id":"T844","span":{"begin":16,"end":25},"obj":"NN"}],"relations":[{"id":"R446","pred":"aux","subj":"T841","obj":"T842"},{"id":"R448","pred":"det","subj":"T843","obj":"T844"},{"id":"R449","pred":"dobj","subj":"T844","obj":"T842"},{"id":"R450","pred":"prep","subj":"T845","obj":"T844"},{"id":"R451","pred":"compound","subj":"T846","obj":"T849"},{"id":"R452","pred":"compound","subj":"T847","obj":"T848"},{"id":"R453","pred":"compound","subj":"T848","obj":"T849"},{"id":"R454","pred":"pobj","subj":"T849","obj":"T845"},{"id":"R455","pred":"nummod","subj":"T850","obj":"T849"},{"id":"R456","pred":"punct","subj":"T851","obj":"T852"},{"id":"R457","pred":"appos","subj":"T852","obj":"T849"},{"id":"R458","pred":"punct","subj":"T853","obj":"T852"},{"id":"R459","pred":"conj","subj":"T854","obj":"T852"},{"id":"R460","pred":"cc","subj":"T855","obj":"T854"},{"id":"R461","pred":"compound","subj":"T856","obj":"T857"},{"id":"R462","pred":"conj","subj":"T857","obj":"T854"},{"id":"R463","pred":"punct","subj":"T858","obj":"T860"},{"id":"R464","pred":"nsubj","subj":"T859","obj":"T860"},{"id":"R465","pred":"ROOT","subj":"T860","obj":"T860"},{"id":"R466","pred":"compound","subj":"T861","obj":"T862"},{"id":"R467","pred":"dobj","subj":"T862","obj":"T860"},{"id":"R468","pred":"prep","subj":"T863","obj":"T862"},{"id":"R469","pred":"nummod","subj":"T864","obj":"T865"},{"id":"R470","pred":"pobj","subj":"T865","obj":"T863"},{"id":"R471","pred":"punct","subj":"T866","obj":"T865"},{"id":"R472","pred":"nummod","subj":"T867","obj":"T868"},{"id":"R473","pred":"nummod","subj":"T868","obj":"T870"},{"id":"R474","pred":"compound","subj":"T869","obj":"T870"},{"id":"R475","pred":"appos","subj":"T870","obj":"T865"},{"id":"R476","pred":"punct","subj":"T871","obj":"T865"},{"id":"R477","pred":"pobj","subj":"T872","obj":"T863"},{"id":"R478","pred":"cc","subj":"T873","obj":"T872"},{"id":"R479","pred":"amod","subj":"T874","obj":"T875"},{"id":"R480","pred":"conj","subj":"T875","obj":"T872"},{"id":"R481","pred":"punct","subj":"T876","obj":"T880"},{"id":"R482","pred":"nummod","subj":"T877","obj":"T880"},{"id":"R483","pred":"nummod","subj":"T878","obj":"T880"},{"id":"R484","pred":"compound","subj":"T879","obj":"T880"},{"id":"R485","pred":"appos","subj":"T880","obj":"T875"},{"id":"R486","pred":"punct","subj":"T881","obj":"T880"},{"id":"R487","pred":"conj","subj":"T882","obj":"T875"},{"id":"R488","pred":"punct","subj":"T883","obj":"T860"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T652","span":{"begin":66,"end":76},"obj":"Gene_expression"},{"id":"T651","span":{"begin":66,"end":76},"obj":"Gene_expression"},{"id":"T650","span":{"begin":131,"end":135},"obj":"Protein"},{"id":"T649","span":{"begin":60,"end":64},"obj":"Protein"},{"id":"T648","span":{"begin":29,"end":58},"obj":"Protein"}],"relations":[{"id":"R349","pred":"themeOf","subj":"T648","obj":"T651"},{"id":"R350","pred":"themeOf","subj":"T649","obj":"T652"}],"text":"To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice."}