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PMC:3342329 / 195-384 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T90 175-179 Protein denotes CCR5
T89 146-150 Protein denotes CCR5
T88 131-135 Protein denotes CCR5
T87 66-76 Gene_expression denotes expression
T86 60-64 Protein denotes CCR5
T85 29-58 Protein denotes C-C chemokine receptor type 5
T65 175-179 Protein denotes CCR5
T64 146-150 Protein denotes CCR5
T63 131-135 Protein denotes CCR5
T62 60-64 Protein denotes CCR5
T61 29-58 Protein denotes C-C chemokine receptor type 5
R17 T85 T87 themeOf C-C chemokine receptor type 5,expression
R18 T86 T85 equivalentTo CCR5,C-C chemokine receptor type 5

testone

Id Subject Object Predicate Lexical cue
T29 175-179 Protein denotes CCR5
T28 146-150 Protein denotes CCR5
T27 131-135 Protein denotes CCR5
T26 60-64 Protein denotes CCR5
T25 29-58 Protein denotes C-C chemokine receptor type 5
T47 66-76 Gene_expression denotes expression
R3 T25 T47 themeOf C-C chemokine receptor type 5,expression
R4 T26 T25 equivalentTo CCR5,C-C chemokine receptor type 5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T640 66-76 Gene_expression denotes expression
T639 136-144 Negative_regulation denotes knockout
T621 175-179 Protein denotes CCR5
T620 146-150 Protein denotes CCR5
T619 131-135 Protein denotes CCR5
T618 60-64 Protein denotes CCR5
T617 29-58 Protein denotes C-C chemokine receptor type 5
R338 T617 T640 themeOf C-C chemokine receptor type 5,expression
R339 T618 T640 themeOf CCR5,expression
R340 T619 T639 themeOf CCR5,knockout
R341 T620 T639 themeOf CCR5,knockout

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T766 66-76 Gene_expression denotes expression
T765 136-144 Negative_regulation denotes knockout
T747 175-179 Protein denotes CCR5
T746 146-150 Protein denotes CCR5
T745 131-135 Protein denotes CCR5
T744 60-64 Protein denotes CCR5
T743 29-58 Protein denotes C-C chemokine receptor type 5
R407 T743 T766 themeOf C-C chemokine receptor type 5,expression
R408 T744 T766 themeOf CCR5,expression
R409 T745 T765 themeOf CCR5,knockout
R410 T746 T765 themeOf CCR5,knockout

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T301 128-130 IN denotes in
T300 121-127 NN denotes growth
T299 112-120 NN denotes melanoma
T298 103-111 VB denotes compared
T297 100-102 PRP denotes we
T296 98-99 -COMMA- denotes ,
T295 87-98 NN denotes development
T294 81-86 NN denotes tumor
T293 77-80 CC denotes and
T292 66-76 NN denotes expression
T291 64-65 -RRB- denotes )
T290 60-64 NN denotes CCR5
T289 59-60 -LRB- denotes (
T288 57-58 CD denotes 5
T287 52-56 NN denotes type
T286 43-51 NN denotes receptor
T285 33-42 NN denotes chemokine
T284 29-32 NN denotes C-C
T283 26-28 IN denotes of
T282 16-25 NN denotes relevance
T281 12-15 DT denotes the
T280 3-11 VB denotes evaluate
T279 0-2 TO denotes To
T314 184-188 NN denotes mice
T313 182-183 -RRB- denotes )
T312 175-182 NN denotes CCR5+/+
T311 174-175 -LRB- denotes (
T310 169-173 NN denotes type
T309 164-168 JJ denotes wild
T308 160-163 CC denotes and
T307 155-159 NN denotes mice
T306 153-154 -RRB- denotes )
T305 146-153 NN denotes CCR5−/−
T304 145-146 -LRB- denotes (
T303 136-144 NN denotes knockout
T302 131-135 NN denotes CCR5
R61 T280 T279 arg1Of evaluate,To
R62 T282 T280 arg2Of relevance,evaluate
R63 T282 T281 arg1Of relevance,the
R64 T282 T283 arg1Of relevance,of
R65 T290 T289 arg2Of CCR5,(
R66 T291 T289 arg3Of ),(
R67 T292 T284 arg1Of expression,C-C
R68 T292 T285 arg1Of expression,chemokine
R69 T292 T286 arg1Of expression,receptor
R70 T292 T287 arg1Of expression,type
R71 T292 T288 arg1Of expression,5
R72 T292 T289 arg1Of expression,(
R73 T292 T293 arg1Of expression,and
R74 T293 T283 arg2Of and,of
R75 T295 T293 arg2Of development,and
R76 T295 T294 arg1Of development,tumor
R77 T297 T280 arg1Of we,evaluate
R78 T297 T298 arg1Of we,compared
R79 T298 T279 modOf compared,To
R80 T298 T296 arg1Of compared,","
R81 T300 T298 arg2Of growth,compared
R82 T300 T299 arg1Of growth,melanoma
R83 T300 T301 arg1Of growth,in
R84 T303 T302 arg1Of knockout,CCR5
R85 T303 T304 arg1Of knockout,(
R86 T305 T304 arg2Of CCR5−/−,(
R87 T306 T304 arg3Of ),(
R88 T307 T303 arg1Of mice,knockout
R89 T307 T308 arg1Of mice,and
R90 T308 T301 arg2Of and,in
R91 T310 T309 arg1Of type,wild
R92 T310 T311 arg1Of type,(
R93 T312 T311 arg2Of CCR5+/+,(
R94 T313 T311 arg3Of ),(
R95 T314 T308 arg2Of mice,and
R96 T314 T310 arg1Of mice,type

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T171 175-179 Protein denotes CCR5
T170 146-150 Protein denotes CCR5
T169 131-135 Protein denotes CCR5
T168 60-64 Protein denotes CCR5
T167 29-58 Protein denotes C-C chemokine receptor type 5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T537 175-179 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T536 146-150 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T535 131-135 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T534 60-64 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T188 121-127 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T187 87-98 http://purl.obolibrary.org/obo/GO_0032502 denotes development

sentences

Id Subject Object Predicate Lexical cue
T121 0-189 Sentence denotes To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice.
T4 0-189 Sentence denotes To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice.

simple1

Id Subject Object Predicate Lexical cue
T244 175-179 Protein denotes CCR5
T243 146-150 Protein denotes CCR5
T242 131-135 Protein denotes CCR5
T241 60-64 Protein denotes CCR5
T240 29-58 Protein denotes C-C chemokine receptor type 5

DLUT931

Id Subject Object Predicate Lexical cue
T579 136-144 Negative_regulation denotes knockout
T578 66-76 Gene_expression denotes expression
T561 175-179 Protein denotes CCR5
T560 146-150 Protein denotes CCR5
T559 131-135 Protein denotes CCR5
T558 60-64 Protein denotes CCR5
T557 29-58 Protein denotes C-C chemokine receptor type 5
R314 T557 T578 themeOf C-C chemokine receptor type 5,expression
R315 T558 T578 themeOf CCR5,expression
R316 T559 T579 themeOf CCR5,knockout
R317 T560 T579 themeOf CCR5,knockout

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T809 60-64 Protein denotes CCR5
T800 155-159 Protein denotes mice
T796 155-188 Protein denotes mice and wild type (CCR5+/+) mice
T790 33-42 Protein denotes chemokine
T787 52-65 Protein denotes type 5 (CCR5)
T786 131-135 Protein denotes CCR5
T773 29-76 Protein denotes C-C chemokine receptor type 5 (CCR5) expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T883 188-189 . denotes .
T882 184-188 NNS denotes mice
T881 182-183 -RRB- denotes )
T880 181-182 NN denotes +
T879 180-181 NN denotes /
T878 179-180 CD denotes +
T877 175-179 CD denotes CCR5
T876 174-175 -LRB- denotes (
T875 169-173 NN denotes type
T874 164-168 JJ denotes wild
T873 160-163 CC denotes and
T872 155-159 NNS denotes mice
T871 153-154 -RRB- denotes )
T870 152-153 NN denotes −
T869 151-152 NN denotes /
T868 150-151 CD denotes −
T867 146-150 CD denotes CCR5
T866 145-146 -LRB- denotes (
T865 136-144 NN denotes knockout
T864 131-135 CD denotes CCR5
T863 128-130 IN denotes in
T862 121-127 NN denotes growth
T861 112-120 NN denotes melanoma
T860 103-111 VBD denotes compared
T859 100-102 PRP denotes we
T858 98-99 , denotes ,
T857 87-98 NN denotes development
T856 81-86 NN denotes tumor
T855 77-80 CC denotes and
T854 66-76 NN denotes expression
T853 64-65 -RRB- denotes )
T852 60-64 NNS denotes CCR5
T851 59-60 -LRB- denotes (
T843 12-15 DT denotes the
T842 3-11 VB denotes evaluate
T841 0-2 TO denotes To
T850 57-58 CD denotes 5
T849 52-56 NN denotes type
T848 43-51 NN denotes receptor
T847 33-42 NN denotes chemokine
T846 29-32 NNP denotes C-C
T845 26-28 IN denotes of
T844 16-25 NN denotes relevance
R446 T841 T842 aux To,evaluate
R448 T843 T844 det the,relevance
R449 T844 T842 dobj relevance,evaluate
R450 T845 T844 prep of,relevance
R451 T846 T849 compound C-C,type
R452 T847 T848 compound chemokine,receptor
R453 T848 T849 compound receptor,type
R454 T849 T845 pobj type,of
R455 T850 T849 nummod 5,type
R456 T851 T852 punct (,CCR5
R457 T852 T849 appos CCR5,type
R458 T853 T852 punct ),CCR5
R459 T854 T852 conj expression,CCR5
R460 T855 T854 cc and,expression
R461 T856 T857 compound tumor,development
R462 T857 T854 conj development,expression
R463 T858 T860 punct ",",compared
R464 T859 T860 nsubj we,compared
R465 T860 T860 ROOT compared,compared
R466 T861 T862 compound melanoma,growth
R467 T862 T860 dobj growth,compared
R468 T863 T862 prep in,growth
R469 T864 T865 nummod CCR5,knockout
R470 T865 T863 pobj knockout,in
R471 T866 T865 punct (,knockout
R472 T867 T868 nummod CCR5,−
R473 T868 T870 nummod −,−
R474 T869 T870 compound /,−
R475 T870 T865 appos −,knockout
R476 T871 T865 punct ),knockout
R477 T872 T863 pobj mice,in
R478 T873 T872 cc and,mice
R479 T874 T875 amod wild,type
R480 T875 T872 conj type,mice
R481 T876 T880 punct (,+
R482 T877 T880 nummod CCR5,+
R483 T878 T880 nummod +,+
R484 T879 T880 compound /,+
R485 T880 T875 appos +,type
R486 T881 T880 punct ),+
R487 T882 T875 conj mice,type
R488 T883 T860 punct .,compared

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T652 66-76 Gene_expression denotes expression
T651 66-76 Gene_expression denotes expression
T650 131-135 Protein denotes CCR5
T649 60-64 Protein denotes CCR5
T648 29-58 Protein denotes C-C chemokine receptor type 5
R349 T648 T651 themeOf C-C chemokine receptor type 5,expression
R350 T649 T652 themeOf CCR5,expression