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PMC:3342329 / 153-420 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T91 232-236 Protein denotes CCR5
T90 217-221 Protein denotes CCR5
T89 188-192 Protein denotes CCR5
T88 173-177 Protein denotes CCR5
T87 108-118 Gene_expression denotes expression
T86 102-106 Protein denotes CCR5
T85 71-100 Protein denotes C-C chemokine receptor type 5
T66 232-236 Protein denotes CCR5
T65 217-221 Protein denotes CCR5
T64 188-192 Protein denotes CCR5
T63 173-177 Protein denotes CCR5
T62 102-106 Protein denotes CCR5
T61 71-100 Protein denotes C-C chemokine receptor type 5
R17 T85 T87 themeOf C-C chemokine receptor type 5,expression
R18 T86 T85 equivalentTo CCR5,C-C chemokine receptor type 5

testone

Id Subject Object Predicate Lexical cue
T30 232-236 Protein denotes CCR5
T29 217-221 Protein denotes CCR5
T28 188-192 Protein denotes CCR5
T27 173-177 Protein denotes CCR5
T26 102-106 Protein denotes CCR5
T25 71-100 Protein denotes C-C chemokine receptor type 5
T47 108-118 Gene_expression denotes expression
R3 T25 T47 themeOf C-C chemokine receptor type 5,expression
R4 T26 T25 equivalentTo CCR5,C-C chemokine receptor type 5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T640 108-118 Gene_expression denotes expression
T639 178-186 Negative_regulation denotes knockout
T622 232-236 Protein denotes CCR5
T621 217-221 Protein denotes CCR5
T620 188-192 Protein denotes CCR5
T619 173-177 Protein denotes CCR5
T618 102-106 Protein denotes CCR5
T617 71-100 Protein denotes C-C chemokine receptor type 5
R338 T617 T640 themeOf C-C chemokine receptor type 5,expression
R339 T618 T640 themeOf CCR5,expression
R340 T619 T639 themeOf CCR5,knockout
R341 T620 T639 themeOf CCR5,knockout

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T766 108-118 Gene_expression denotes expression
T765 178-186 Negative_regulation denotes knockout
T748 232-236 Protein denotes CCR5
T747 217-221 Protein denotes CCR5
T746 188-192 Protein denotes CCR5
T745 173-177 Protein denotes CCR5
T744 102-106 Protein denotes CCR5
T743 71-100 Protein denotes C-C chemokine receptor type 5
R407 T743 T766 themeOf C-C chemokine receptor type 5,expression
R408 T744 T766 themeOf CCR5,expression
R409 T745 T765 themeOf CCR5,knockout
R410 T746 T765 themeOf CCR5,knockout

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T301 170-172 IN denotes in
T300 163-169 NN denotes growth
T299 154-162 NN denotes melanoma
T298 145-153 VB denotes compared
T297 142-144 PRP denotes we
T296 140-141 -COMMA- denotes ,
T295 129-140 NN denotes development
T294 123-128 NN denotes tumor
T293 119-122 CC denotes and
T292 108-118 NN denotes expression
T291 106-107 -RRB- denotes )
T290 102-106 NN denotes CCR5
T289 101-102 -LRB- denotes (
T288 99-100 CD denotes 5
T287 94-98 NN denotes type
T286 85-93 NN denotes receptor
T285 75-84 NN denotes chemokine
T284 71-74 NN denotes C-C
T283 68-70 IN denotes of
T282 58-67 NN denotes relevance
T281 54-57 DT denotes the
T280 45-53 VB denotes evaluate
T279 42-44 TO denotes To
T319 260-265 NN denotes tumor
T318 252-259 VB denotes reduced
T317 245-251 VB denotes showed
T316 240-244 NN denotes mice
T315 232-239 NN denotes CCR5−/−
T314 226-230 NN denotes mice
T313 224-225 -RRB- denotes )
T312 217-224 NN denotes CCR5+/+
T311 216-217 -LRB- denotes (
T310 211-215 NN denotes type
T309 206-210 JJ denotes wild
T308 202-205 CC denotes and
T307 197-201 NN denotes mice
T306 195-196 -RRB- denotes )
T305 188-195 NN denotes CCR5−/−
T304 187-188 -LRB- denotes (
T303 178-186 NN denotes knockout
T302 173-177 NN denotes CCR5
R61 T280 T279 arg1Of evaluate,To
R62 T282 T280 arg2Of relevance,evaluate
R63 T282 T281 arg1Of relevance,the
R64 T282 T283 arg1Of relevance,of
R65 T290 T289 arg2Of CCR5,(
R66 T291 T289 arg3Of ),(
R67 T292 T284 arg1Of expression,C-C
R68 T292 T285 arg1Of expression,chemokine
R69 T292 T286 arg1Of expression,receptor
R70 T292 T287 arg1Of expression,type
R71 T292 T288 arg1Of expression,5
R72 T292 T289 arg1Of expression,(
R73 T292 T293 arg1Of expression,and
R74 T293 T283 arg2Of and,of
R75 T295 T293 arg2Of development,and
R76 T295 T294 arg1Of development,tumor
R77 T297 T280 arg1Of we,evaluate
R78 T297 T298 arg1Of we,compared
R79 T298 T279 modOf compared,To
R80 T298 T296 arg1Of compared,","
R81 T300 T298 arg2Of growth,compared
R82 T300 T299 arg1Of growth,melanoma
R83 T300 T301 arg1Of growth,in
R84 T303 T302 arg1Of knockout,CCR5
R85 T303 T304 arg1Of knockout,(
R86 T305 T304 arg2Of CCR5−/−,(
R87 T306 T304 arg3Of ),(
R88 T307 T303 arg1Of mice,knockout
R89 T307 T308 arg1Of mice,and
R90 T308 T301 arg2Of and,in
R91 T310 T309 arg1Of type,wild
R92 T310 T311 arg1Of type,(
R93 T312 T311 arg2Of CCR5+/+,(
R94 T313 T311 arg3Of ),(
R95 T314 T308 arg2Of mice,and
R96 T314 T310 arg1Of mice,type
R97 T316 T315 arg1Of mice,CCR5−/−
R98 T316 T317 arg1Of mice,showed

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T172 232-236 Protein denotes CCR5
T171 217-221 Protein denotes CCR5
T170 188-192 Protein denotes CCR5
T169 173-177 Protein denotes CCR5
T168 102-106 Protein denotes CCR5
T167 71-100 Protein denotes C-C chemokine receptor type 5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T538 232-236 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T537 217-221 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T536 188-192 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T535 173-177 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T534 102-106 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T188 163-169 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T187 129-140 http://purl.obolibrary.org/obo/GO_0032502 denotes development

sentences

Id Subject Object Predicate Lexical cue
T121 42-231 Sentence denotes To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice.
T3 33-41 Sentence denotes Abstract
T4 42-231 Sentence denotes To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice.

simple1

Id Subject Object Predicate Lexical cue
T245 232-236 Protein denotes CCR5
T244 217-221 Protein denotes CCR5
T243 188-192 Protein denotes CCR5
T242 173-177 Protein denotes CCR5
T241 102-106 Protein denotes CCR5
T240 71-100 Protein denotes C-C chemokine receptor type 5

DLUT931

Id Subject Object Predicate Lexical cue
T579 178-186 Negative_regulation denotes knockout
T578 108-118 Gene_expression denotes expression
T562 232-236 Protein denotes CCR5
T561 217-221 Protein denotes CCR5
T560 188-192 Protein denotes CCR5
T559 173-177 Protein denotes CCR5
T558 102-106 Protein denotes CCR5
T557 71-100 Protein denotes C-C chemokine receptor type 5
R314 T557 T578 themeOf C-C chemokine receptor type 5,expression
R315 T558 T578 themeOf CCR5,expression
R316 T559 T579 themeOf CCR5,knockout
R317 T560 T579 themeOf CCR5,knockout

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T809 102-106 Protein denotes CCR5
T800 197-201 Protein denotes mice
T796 197-230 Protein denotes mice and wild type (CCR5+/+) mice
T794 240-244 Protein denotes mice
T790 75-84 Protein denotes chemokine
T787 94-107 Protein denotes type 5 (CCR5)
T786 173-177 Protein denotes CCR5
T773 71-118 Protein denotes C-C chemokine receptor type 5 (CCR5) expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T891 260-265 NN denotes tumor
T890 252-259 VBN denotes reduced
T889 245-251 VBD denotes showed
T888 240-244 NNS denotes mice
T887 238-239 NN denotes −
T886 237-238 NN denotes /
T885 236-237 CD denotes −
T884 232-236 CD denotes CCR5
T883 230-231 . denotes .
T882 226-230 NNS denotes mice
T881 224-225 -RRB- denotes )
T880 223-224 NN denotes +
T879 222-223 NN denotes /
T878 221-222 CD denotes +
T877 217-221 CD denotes CCR5
T876 216-217 -LRB- denotes (
T875 211-215 NN denotes type
T874 206-210 JJ denotes wild
T873 202-205 CC denotes and
T872 197-201 NNS denotes mice
T871 195-196 -RRB- denotes )
T870 194-195 NN denotes −
T869 193-194 NN denotes /
T868 192-193 CD denotes −
T867 188-192 CD denotes CCR5
T866 187-188 -LRB- denotes (
T865 178-186 NN denotes knockout
T864 173-177 CD denotes CCR5
T863 170-172 IN denotes in
T862 163-169 NN denotes growth
T861 154-162 NN denotes melanoma
T860 145-153 VBD denotes compared
T859 142-144 PRP denotes we
T858 140-141 , denotes ,
T857 129-140 NN denotes development
T856 123-128 NN denotes tumor
T855 119-122 CC denotes and
T854 108-118 NN denotes expression
T853 106-107 -RRB- denotes )
T852 102-106 NNS denotes CCR5
T851 101-102 -LRB- denotes (
T843 54-57 DT denotes the
T842 45-53 VB denotes evaluate
T841 42-44 TO denotes To
T850 99-100 CD denotes 5
T849 94-98 NN denotes type
T848 85-93 NN denotes receptor
T847 75-84 NN denotes chemokine
T846 71-74 NNP denotes C-C
T845 68-70 IN denotes of
T844 58-67 NN denotes relevance
R446 T841 T842 aux To,evaluate
R448 T843 T844 det the,relevance
R449 T844 T842 dobj relevance,evaluate
R450 T845 T844 prep of,relevance
R451 T846 T849 compound C-C,type
R452 T847 T848 compound chemokine,receptor
R453 T848 T849 compound receptor,type
R454 T849 T845 pobj type,of
R455 T850 T849 nummod 5,type
R456 T851 T852 punct (,CCR5
R457 T852 T849 appos CCR5,type
R458 T853 T852 punct ),CCR5
R459 T854 T852 conj expression,CCR5
R460 T855 T854 cc and,expression
R461 T856 T857 compound tumor,development
R462 T857 T854 conj development,expression
R463 T858 T860 punct ",",compared
R464 T859 T860 nsubj we,compared
R465 T860 T860 ROOT compared,compared
R466 T861 T862 compound melanoma,growth
R467 T862 T860 dobj growth,compared
R468 T863 T862 prep in,growth
R469 T864 T865 nummod CCR5,knockout
R470 T865 T863 pobj knockout,in
R471 T866 T865 punct (,knockout
R472 T867 T868 nummod CCR5,−
R473 T868 T870 nummod −,−
R474 T869 T870 compound /,−
R475 T870 T865 appos −,knockout
R476 T871 T865 punct ),knockout
R477 T872 T863 pobj mice,in
R478 T873 T872 cc and,mice
R479 T874 T875 amod wild,type
R480 T875 T872 conj type,mice
R481 T876 T880 punct (,+
R482 T877 T880 nummod CCR5,+
R483 T878 T880 nummod +,+
R484 T879 T880 compound /,+
R485 T880 T875 appos +,type
R486 T881 T880 punct ),+
R487 T882 T875 conj mice,type
R488 T883 T860 punct .,compared
R489 T884 T888 nummod CCR5,mice
R490 T885 T888 nummod −,mice
R491 T886 T888 compound /,mice
R492 T887 T888 compound −,mice
R493 T888 T889 nsubj mice,showed
R494 T889 T889 ROOT showed,showed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T652 108-118 Gene_expression denotes expression
T651 108-118 Gene_expression denotes expression
T650 173-177 Protein denotes CCR5
T649 102-106 Protein denotes CCR5
T648 71-100 Protein denotes C-C chemokine receptor type 5
R349 T648 T651 themeOf C-C chemokine receptor type 5,expression
R350 T649 T652 themeOf CCR5,expression