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PMC:3342329 / 13807-14647 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T6628 813-817 Protein denotes CCR5
T6627 755-761 Protein denotes IL-1Ra
T6626 741-751 Gene_expression denotes expression
T6625 645-651 Protein denotes IL-1Ra
T6624 631-641 Gene_expression denotes expression
T6623 617-625 Positive_regulation denotes elevated
T6622 577-583 Protein denotes IL-1Ra
T6621 541-545 Protein denotes CCR5
T6620 454-458 Protein denotes CCR5
T6619 433-437 Protein denotes CCR5
T6618 339-343 Protein denotes CCR5
T6617 314-318 Protein denotes CCR5
T6616 262-271 Positive_regulation denotes increased
T6615 255-261 Protein denotes MIP-1α
T6614 250-253 Protein denotes MIG
T6613 242-248 Protein denotes IL-1Ra
T6612 109-113 Protein denotes CCR5
T6611 97-101 Protein denotes CCR5
T6607 813-817 Protein denotes CCR5
T6606 755-761 Protein denotes IL-1Ra
T6605 645-651 Protein denotes IL-1Ra
T6604 577-583 Protein denotes IL-1Ra
T6603 541-545 Protein denotes CCR5
T6602 454-458 Protein denotes CCR5
T6601 433-437 Protein denotes CCR5
T6600 339-343 Protein denotes CCR5
T6599 314-318 Protein denotes CCR5
T6598 255-261 Protein denotes MIP-1α
T6597 250-253 Protein denotes MIG
T6596 242-248 Protein denotes IL-1Ra
T6595 109-113 Protein denotes CCR5
T6594 97-101 Protein denotes CCR5
R4492 T6624 T6623 themeOf expression,elevated
R4493 T6625 T6624 themeOf IL-1Ra,expression
R4494 T6627 T6626 themeOf IL-1Ra,expression

testone

Id Subject Object Predicate Lexical cue
T6591 766-777 Positive_regulation denotes upregulated
T6590 741-751 Gene_expression denotes expression
T6589 631-641 Gene_expression denotes expression
T6588 617-625 Positive_regulation denotes elevated
T6587 262-271 Positive_regulation denotes increased
T6585 813-817 Protein denotes CCR5
T6584 755-761 Protein denotes IL-1Ra
T6583 645-651 Protein denotes IL-1Ra
T6582 577-583 Protein denotes IL-1Ra
T6581 541-545 Protein denotes CCR5
T6580 454-458 Protein denotes CCR5
T6579 433-437 Protein denotes CCR5
T6578 339-343 Protein denotes CCR5
T6577 314-318 Protein denotes CCR5
T6576 255-261 Protein denotes MIP-1α
T6575 250-253 Protein denotes MIG
T6574 242-248 Protein denotes IL-1Ra
T6573 109-113 Protein denotes CCR5
T6572 97-101 Protein denotes CCR5
R4485 T6574 T6587 themeOf IL-1Ra,increased
R4486 T6575 T6587 themeOf MIG,increased
R4487 T6583 T6589 themeOf IL-1Ra,expression
R4488 T6584 T6590 themeOf IL-1Ra,expression
R4489 T6589 T6588 themeOf expression,elevated
R4490 T6590 T6591 themeOf expression,upregulated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7169 741-751 Gene_expression denotes expression
T7168 766-777 Positive_regulation denotes upregulated
T7167 617-625 Positive_regulation denotes elevated
T7166 631-641 Gene_expression denotes expression
T7165 262-271 Positive_regulation denotes increased
T7163 813-817 Protein denotes CCR5
T7162 755-761 Protein denotes IL-1Ra
T7161 645-651 Protein denotes IL-1Ra
T7160 577-583 Protein denotes IL-1Ra
T7159 541-545 Protein denotes CCR5
T7158 454-458 Protein denotes CCR5
T7157 433-437 Protein denotes CCR5
T7156 339-343 Protein denotes CCR5
T7155 314-318 Protein denotes CCR5
T7154 255-261 Protein denotes MIP-1α
T7153 250-253 Protein denotes MIG
T7152 242-248 Protein denotes IL-1Ra
T7151 109-113 Protein denotes CCR5
T7150 97-101 Protein denotes CCR5
R4884 T7152 T7165 themeOf IL-1Ra,increased
R4885 T7153 T7165 themeOf MIG,increased
R4886 T7154 T7165 themeOf MIP-1α,increased
R4887 T7160 T7167 themeOf IL-1Ra,elevated
R4888 T7161 T7166 themeOf IL-1Ra,expression
R4889 T7162 T7169 themeOf IL-1Ra,expression
R4890 T7169 T7168 themeOf expression,upregulated

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6981 262-271 Positive_regulation denotes increased
T6979 813-817 Protein denotes CCR5
T6978 755-761 Protein denotes IL-1Ra
T6977 645-651 Protein denotes IL-1Ra
T6976 577-583 Protein denotes IL-1Ra
T6975 541-545 Protein denotes CCR5
T6974 454-458 Protein denotes CCR5
T6973 433-437 Protein denotes CCR5
T6972 339-343 Protein denotes CCR5
T6971 314-318 Protein denotes CCR5
T6970 255-261 Protein denotes MIP-1α
T6969 250-253 Protein denotes MIG
T6968 242-248 Protein denotes IL-1Ra
T6967 109-113 Protein denotes CCR5
T6966 97-101 Protein denotes CCR5
T6985 741-751 Gene_expression denotes expression
T6984 766-777 Positive_regulation denotes upregulated
T6983 617-625 Positive_regulation denotes elevated
T6982 631-641 Gene_expression denotes expression
R4761 T6970 T6981 themeOf MIP-1α,increased
R4762 T6976 T6983 themeOf IL-1Ra,elevated
R4763 T6977 T6982 themeOf IL-1Ra,expression
R4764 T6978 T6985 themeOf IL-1Ra,expression
R4765 T6985 T6984 themeOf expression,upregulated

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6875 838-839 -RRB- denotes )
T6874 834-838 NN denotes 4D-G
T6873 827-833 NN denotes Figure
T6872 826-827 -LRB- denotes (
T6871 821-825 NN denotes mice
T6870 813-820 NN denotes CCR5−/−
T6869 809-812 DT denotes the
T6868 806-808 IN denotes of
T6867 798-805 NN denotes tissues
T6866 791-797 NN denotes spleen
T6865 787-790 CC denotes and
T6864 781-786 NN denotes tumor
T6863 778-780 IN denotes in
T6862 766-777 VB denotes upregulated
T6861 762-765 VB denotes was
T6860 755-761 NN denotes IL-1Ra
T6859 752-754 IN denotes of
T6858 741-751 NN denotes expression
T6857 737-740 DT denotes The
T6856 727-735 NN denotes blotting
T6855 719-726 JJ denotes western
T6854 715-718 CC denotes and
T6853 696-714 NN denotes immunofluorescence
T6852 693-695 IN denotes by
T6851 684-692 VB denotes analyzed
T6850 680-683 VB denotes was
T6849 672-679 NN denotes tissues
T6848 665-671 NN denotes spleen
T6847 661-664 CC denotes and
T6846 655-660 NN denotes tumor
T6845 652-654 IN denotes in
T6844 645-651 NN denotes IL-1Ra
T6843 642-644 IN denotes of
T6842 631-641 NN denotes expression
T6841 627-630 DT denotes the
T6840 625-626 -COMMA- denotes ,
T6839 617-625 VB denotes elevated
T6838 603-616 RB denotes significantly
T6837 598-602 RB denotes most
T6836 594-597 DT denotes the
T6835 590-593 VB denotes was
T6833 577-583 NN denotes IL-1Ra
T6832 573-576 DT denotes the
T6831 567-572 IN denotes Since
T6830 564-565 -RRB- denotes )
T6829 562-564 NN denotes 4C
T6828 555-561 NN denotes Figure
T6827 554-555 -LRB- denotes (
T6826 549-553 NN denotes mice
T6825 541-548 NN denotes CCR5−/−
T6824 538-540 IN denotes of
T6823 530-537 NN denotes spleens
T6822 526-529 DT denotes the
T6821 523-525 IN denotes in
T6820 517-522 VB denotes found
T6819 512-516 VB denotes were
T6818 505-511 NN denotes levels
T6817 496-504 NN denotes cytokine
T6816 488-495 JJ denotes altered
T6815 480-487 JJ denotes Similar
T6814 477-478 -RRB- denotes )
T6813 475-477 NN denotes 4B
T6812 468-474 NN denotes Figure
T6811 467-468 -LRB- denotes (
T6810 462-466 NN denotes mice
T6809 454-461 JJ denotes CCR5+/+
T6808 450-453 DT denotes the
T6807 446-449 CC denotes and
T6806 441-445 NN denotes mice
T6805 433-440 NN denotes CCR5−/−
T6804 429-432 DT denotes the
T6803 421-428 IN denotes between
T6802 411-420 JJ denotes different
T6801 408-410 VB denotes be
T6800 405-407 TO denotes to
T6799 399-404 VB denotes found
T6798 394-398 VB denotes were
T6797 384-393 NN denotes cytokines
T6796 378-383 JJ denotes other
T6795 375-377 DT denotes no
T6794 373-374 -COMMA- denotes ,
T6793 364-373 NN denotes technique
T6792 359-363 DT denotes this
T6791 353-358 VB denotes Using
T6790 347-351 NN denotes mice
T6789 339-346 JJ denotes CCR5+/+
T6788 336-338 TO denotes to
T6787 327-335 VB denotes compared
T6786 322-326 NN denotes mice
T6785 314-321 NN denotes CCR5−/−
T6784 311-313 IN denotes in
T6783 309-310 -COMMA- denotes ,
T6782 297-309 RB denotes respectively
T6781 289-296 RB denotes 25-fold
T6780 285-288 CC denotes and
T6779 283-284 CD denotes 9
T6778 281-282 -COMMA- denotes ,
T6777 278-281 CD denotes 686
T6776 272-277 RB denotes about
T6775 262-271 VB denotes increased
T6774 255-261 NN denotes MIP-1α
T6773 253-254 -COMMA- denotes ,
T6772 250-253 NN denotes MIG
T6771 248-249 -COMMA- denotes ,
T6770 242-248 NN denotes IL-1Ra
T6769 239-241 IN denotes of
T6768 232-238 NN denotes levels
T6767 228-231 DT denotes the
T6766 226-227 -COMMA- denotes ,
T6765 217-226 NN denotes cytokines
T6764 210-216 VB denotes tested
T6763 207-209 CD denotes 40
T6762 201-206 IN denotes Among
T6761 198-199 -RRB- denotes )
T6760 196-198 NN denotes 4A
T6759 189-195 NN denotes Figure
T6758 188-189 -LRB- denotes (
T6757 182-187 NNP denotes Array
T6756 173-181 NNP denotes Proteome
T6755 167-172 NNP denotes Mouse
T6754 165-166 DT denotes a
T6753 159-164 VB denotes using
T6752 153-158 NN denotes assay
T6751 147-152 NN denotes array
T6750 138-146 NN denotes cytokine
T6749 136-137 DT denotes a
T6748 126-135 VB denotes conducted
T6747 123-125 PRP denotes we
T6746 121-122 -COMMA- denotes ,
T6745 117-121 NN denotes mice
T6744 109-116 NN denotes CCR5−/−
T6743 105-108 CC denotes and
T6742 97-104 NN denotes CCR5+/+
T6741 93-96 DT denotes the
T6740 90-92 IN denotes of
T6739 82-89 NN denotes tissues
T6738 75-81 NN denotes spleen
T6737 71-74 CC denotes and
T6736 65-70 NN denotes tumor
T6735 61-64 DT denotes the
T6734 53-60 IN denotes between
T6733 46-52 NN denotes levels
T6732 37-45 NN denotes cytokine
T6731 33-36 DT denotes the
T6730 30-32 IN denotes in
T6729 19-29 NN denotes difference
T6728 15-18 DT denotes the
T6727 3-14 VB denotes investigate
T6726 0-2 TO denotes To
T6834 584-589 NN denotes level
R4514 T6727 T6726 arg1Of investigate,To
R4515 T6729 T6727 arg2Of difference,investigate
R4516 T6729 T6728 arg1Of difference,the
R4517 T6729 T6730 arg1Of difference,in
R4518 T6733 T6730 arg2Of levels,in
R4519 T6733 T6731 arg1Of levels,the
R4520 T6733 T6732 arg1Of levels,cytokine
R4521 T6733 T6734 arg1Of levels,between
R4522 T6736 T6737 arg1Of tumor,and
R4523 T6738 T6737 arg2Of spleen,and
R4524 T6739 T6734 arg2Of tissues,between
R4525 T6739 T6735 arg1Of tissues,the
R4526 T6739 T6736 arg1Of tissues,tumor
R4527 T6739 T6738 arg1Of tissues,spleen
R4528 T6739 T6740 arg1Of tissues,of
R4529 T6742 T6743 arg1Of CCR5+/+,and
R4530 T6744 T6743 arg2Of CCR5−/−,and
R4531 T6745 T6740 arg2Of mice,of
R4532 T6745 T6741 arg1Of mice,the
R4533 T6745 T6742 arg1Of mice,CCR5+/+
R4534 T6745 T6744 arg1Of mice,CCR5−/−
R4535 T6747 T6727 arg1Of we,investigate
R4536 T6747 T6748 arg1Of we,conducted
R4537 T6748 T6726 modOf conducted,To
R4538 T6748 T6746 arg1Of conducted,","
R4539 T6752 T6748 arg2Of assay,conducted
R4540 T6752 T6749 arg1Of assay,a
R4541 T6752 T6750 arg1Of assay,cytokine
R4542 T6752 T6751 arg1Of assay,array
R4543 T6752 T6753 arg1Of assay,using
R4544 T6757 T6753 arg2Of Array,using
R4545 T6757 T6754 arg1Of Array,a
R4546 T6757 T6755 arg1Of Array,Mouse
R4547 T6757 T6756 arg1Of Array,Proteome
R4548 T6757 T6758 arg1Of Array,(
R4549 T6760 T6758 arg2Of 4A,(
R4550 T6760 T6759 arg1Of 4A,Figure
R4551 T6761 T6758 arg3Of ),(
R4552 T6765 T6762 arg2Of cytokines,Among
R4553 T6765 T6763 arg1Of cytokines,40
R4554 T6765 T6764 arg2Of cytokines,tested
R4555 T6768 T6767 arg1Of levels,the
R4556 T6768 T6769 arg1Of levels,of
R4557 T6768 T6775 arg1Of levels,increased
R4558 T6770 T6771 arg1Of IL-1Ra,","
R4559 T6771 T6773 arg1Of ",",","
R4560 T6772 T6771 arg2Of MIG,","
R4561 T6773 T6769 arg2Of ",",of
R4562 T6774 T6773 arg2Of MIP-1α,","
R4563 T6775 T6762 arg1Of increased,Among
R4564 T6775 T6766 arg1Of increased,","
R4565 T6775 T6783 arg1Of increased,","
R4566 T6775 T6784 arg1Of increased,in
R4567 T6777 T6776 arg1Of 686,about
R4568 T6777 T6778 arg1Of 686,","
R4569 T6778 T6775 arg2Of ",",increased
R4570 T6778 T6780 arg1Of ",",and
R4571 T6778 T6782 arg1Of ",",respectively
R4572 T6779 T6778 arg2Of 9,","
R4573 T6782 T6781 arg1Of respectively,25-fold
R4574 T6786 T6784 arg2Of mice,in
R4575 T6786 T6785 arg1Of mice,CCR5−/−
R4576 T6786 T6787 arg1Of mice,compared
R4577 T6788 T6787 arg2Of to,compared
R4578 T6790 T6788 arg2Of mice,to
R4579 T6790 T6789 arg1Of mice,CCR5+/+
R4580 T6793 T6791 arg2Of technique,Using
R4581 T6793 T6792 arg1Of technique,this
R4582 T6797 T6791 arg1Of cytokines,Using
R4583 T6797 T6795 arg1Of cytokines,no
R4584 T6797 T6796 arg1Of cytokines,other
R4585 T6797 T6798 arg1Of cytokines,were
R4586 T6797 T6799 arg2Of cytokines,found
R4587 T6797 T6801 arg1Of cytokines,be
R4588 T6797 T6802 arg1Of cytokines,different
R4589 T6799 T6791 modOf found,Using
R4590 T6799 T6794 arg1Of found,","
R4591 T6799 T6798 arg2Of found,were
R4592 T6801 T6799 arg3Of be,found
R4593 T6801 T6800 arg1Of be,to
R4594 T6802 T6801 arg2Of different,be
R4595 T6802 T6803 arg1Of different,between
R4596 T6806 T6804 arg1Of mice,the
R4597 T6806 T6805 arg1Of mice,CCR5−/−
R4598 T6806 T6807 arg1Of mice,and
R4599 T6807 T6803 arg2Of and,between
R4600 T6810 T6807 arg2Of mice,and
R4601 T6810 T6808 arg1Of mice,the
R4602 T6810 T6809 arg1Of mice,CCR5+/+
R4603 T6810 T6811 arg1Of mice,(
R4604 T6813 T6811 arg2Of 4B,(
R4605 T6813 T6812 arg1Of 4B,Figure
R4606 T6814 T6811 arg3Of ),(
R4607 T6818 T6815 arg1Of levels,Similar
R4608 T6818 T6816 arg1Of levels,altered
R4609 T6818 T6817 arg1Of levels,cytokine
R4610 T6818 T6819 arg1Of levels,were
R4611 T6818 T6820 arg2Of levels,found
R4612 T6820 T6819 arg2Of found,were
R4613 T6820 T6821 arg1Of found,in
R4614 T6823 T6821 arg2Of spleens,in
R4615 T6823 T6822 arg1Of spleens,the
R4616 T6823 T6824 arg1Of spleens,of
R4617 T6826 T6824 arg2Of mice,of
R4618 T6826 T6825 arg1Of mice,CCR5−/−
R4619 T6826 T6827 arg1Of mice,(
R4620 T6829 T6827 arg2Of 4C,(
R4621 T6829 T6828 arg1Of 4C,Figure
R4622 T6830 T6827 arg3Of ),(
R4623 T6834 T6832 arg1Of level,the
R4624 T6834 T6833 arg1Of level,IL-1Ra
R4625 T6834 T6835 arg1Of level,was
R4626 T6834 T6839 arg2Of level,elevated
R4627 T6838 T6837 arg1Of significantly,most
R4628 T6839 T6831 arg2Of elevated,Since
R4629 T6839 T6835 arg2Of elevated,was
R4630 T6839 T6836 arg1Of elevated,the
R4631 T6839 T6838 arg1Of elevated,significantly
R4632 T6842 T6841 arg1Of expression,the
R4633 T6842 T6843 arg1Of expression,of
R4634 T6842 T6845 arg1Of expression,in
R4635 T6842 T6850 arg1Of expression,was
R4636 T6842 T6851 arg2Of expression,analyzed
R4637 T6844 T6843 arg2Of IL-1Ra,of
R4638 T6846 T6847 arg1Of tumor,and
R4639 T6848 T6847 arg2Of spleen,and
R4640 T6849 T6845 arg2Of tissues,in
R4641 T6849 T6846 arg1Of tissues,tumor
R4642 T6849 T6848 arg1Of tissues,spleen
R4643 T6851 T6831 arg1Of analyzed,Since
R4644 T6851 T6840 arg1Of analyzed,","
R4645 T6851 T6850 arg2Of analyzed,was
R4646 T6853 T6854 arg1Of immunofluorescence,and
R4647 T6855 T6854 arg2Of western,and
R4648 T6856 T6851 arg1Of blotting,analyzed
R4649 T6856 T6852 arg2Of blotting,by
R4650 T6856 T6853 arg1Of blotting,immunofluorescence
R4651 T6856 T6855 arg1Of blotting,western
R4652 T6858 T6857 arg1Of expression,The
R4653 T6858 T6859 arg1Of expression,of
R4654 T6858 T6861 arg1Of expression,was
R4655 T6858 T6862 arg2Of expression,upregulated
R4656 T6860 T6859 arg2Of IL-1Ra,of
R4657 T6862 T6861 arg2Of upregulated,was
R4658 T6862 T6863 arg1Of upregulated,in
R4659 T6864 T6865 arg1Of tumor,and
R4660 T6866 T6865 arg2Of spleen,and
R4661 T6867 T6863 arg2Of tissues,in
R4662 T6867 T6864 arg1Of tissues,tumor
R4663 T6867 T6866 arg1Of tissues,spleen
R4664 T6867 T6868 arg1Of tissues,of
R4665 T6871 T6868 arg2Of mice,of
R4666 T6871 T6869 arg1Of mice,the
R4667 T6871 T6870 arg1Of mice,CCR5−/−
R4668 T6871 T6872 arg1Of mice,(
R4669 T6874 T6872 arg2Of 4D-G,(
R4670 T6874 T6873 arg1Of 4D-G,Figure
R4671 T6875 T6872 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T6682 813-817 Protein denotes CCR5
T6681 755-761 Protein denotes IL-1Ra
T6680 645-651 Protein denotes IL-1Ra
T6679 577-583 Protein denotes IL-1Ra
T6678 541-545 Protein denotes CCR5
T6677 454-458 Protein denotes CCR5
T6676 433-437 Protein denotes CCR5
T6675 339-343 Protein denotes CCR5
T6674 314-318 Protein denotes CCR5
T6673 255-261 Protein denotes MIP-1α
T6672 250-253 Protein denotes MIG
T6671 242-248 Protein denotes IL-1Ra
T6670 109-113 Protein denotes CCR5
T6669 97-101 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7106 255-261 http://www.uniprot.org/uniprot/P10147 denotes MIP-1α
T7105 813-817 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7104 541-545 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7103 454-458 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7102 433-437 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7101 339-343 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7100 314-318 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7099 109-113 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7098 97-101 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7096 755-761 http://www.uniprot.org/uniprot/P18510 denotes IL-1Ra
T7095 645-651 http://www.uniprot.org/uniprot/P18510 denotes IL-1Ra
T7094 577-583 http://www.uniprot.org/uniprot/P18510 denotes IL-1Ra
T7093 242-248 http://www.uniprot.org/uniprot/P18510 denotes IL-1Ra

UBERON-AE

Id Subject Object Predicate Lexical cue
T6635 798-805 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T6634 672-679 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T6633 82-89 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T6632 791-797 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen
T6631 665-671 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen
T6630 75-81 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen

sentences

Id Subject Object Predicate Lexical cue
T6642 737-840 Sentence denotes The expression of IL-1Ra was upregulated in tumor and spleen tissues of the CCR5−/− mice (Figure 4D-G).
T6641 567-736 Sentence denotes Since the IL-1Ra level was the most significantly elevated, the expression of IL-1Ra in tumor and spleen tissues was analyzed by immunofluorescence and western blotting.
T6640 480-566 Sentence denotes Similar altered cytokine levels were found in the spleens of CCR5−/− mice (Figure 4C).
T6639 353-479 Sentence denotes Using this technique, no other cytokines were found to be different between the CCR5−/− mice and the CCR5+/+ mice (Figure 4B).
T6638 201-352 Sentence denotes Among 40 tested cytokines, the levels of IL-1Ra, MIG, MIP-1α increased about 686, 9 and 25-fold respectively, in CCR5−/− mice compared to CCR5+/+ mice.
T6637 0-200 Sentence denotes To investigate the difference in the cytokine levels between the tumor and spleen tissues of the CCR5+/+ and CCR5−/− mice, we conducted a cytokine array assay using a Mouse Proteome Array (Figure 4A).
T108 0-200 Sentence denotes To investigate the difference in the cytokine levels between the tumor and spleen tissues of the CCR5+/+ and CCR5−/− mice, we conducted a cytokine array assay using a Mouse Proteome Array (Figure 4A).
T109 201-352 Sentence denotes Among 40 tested cytokines, the levels of IL-1Ra, MIG, MIP-1α increased about 686, 9 and 25-fold respectively, in CCR5−/− mice compared to CCR5+/+ mice.
T110 353-479 Sentence denotes Using this technique, no other cytokines were found to be different between the CCR5−/− mice and the CCR5+/+ mice (Figure 4B).
T111 480-566 Sentence denotes Similar altered cytokine levels were found in the spleens of CCR5−/− mice (Figure 4C).
T112 567-736 Sentence denotes Since the IL-1Ra level was the most significantly elevated, the expression of IL-1Ra in tumor and spleen tissues was analyzed by immunofluorescence and western blotting.
T113 737-840 Sentence denotes The expression of IL-1Ra was upregulated in tumor and spleen tissues of the CCR5−/− mice (Figure 4D-G).

simple1

Id Subject Object Predicate Lexical cue
T6698 813-817 Protein denotes CCR5
T6697 755-761 Protein denotes IL-1Ra
T6696 645-651 Protein denotes IL-1Ra
T6695 577-583 Protein denotes IL-1Ra
T6694 541-545 Protein denotes CCR5
T6693 454-458 Protein denotes CCR5
T6692 433-437 Protein denotes CCR5
T6691 339-343 Protein denotes CCR5
T6690 314-318 Protein denotes CCR5
T6689 255-261 Protein denotes MIP-1α
T6688 250-253 Protein denotes MIG
T6687 242-248 Protein denotes IL-1Ra
T6686 109-113 Protein denotes CCR5
T6685 97-101 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T7128 766-777 Positive_regulation denotes upregulated
T7127 741-751 Gene_expression denotes expression
T7126 631-641 Gene_expression denotes expression
T7125 617-625 Positive_regulation denotes elevated
T7124 262-271 Positive_regulation denotes increased
T7122 813-817 Protein denotes CCR5
T7121 755-761 Protein denotes IL-1Ra
T7120 645-651 Protein denotes IL-1Ra
T7119 577-583 Protein denotes IL-1Ra
T7118 541-545 Protein denotes CCR5
T7117 454-458 Protein denotes CCR5
T7116 433-437 Protein denotes CCR5
T7115 339-343 Protein denotes CCR5
T7114 314-318 Protein denotes CCR5
T7113 255-261 Protein denotes MIP-1α
T7112 250-253 Protein denotes MIG
T7111 242-248 Protein denotes IL-1Ra
T7110 109-113 Protein denotes CCR5
T7109 97-101 Protein denotes CCR5
R4873 T7111 T7124 themeOf IL-1Ra,increased
R4874 T7113 T7124 themeOf MIP-1α,increased
R4875 T7119 T7125 themeOf IL-1Ra,elevated
R4876 T7120 T7126 themeOf IL-1Ra,expression
R4877 T7121 T7127 themeOf IL-1Ra,expression
R4878 T7126 T7125 themeOf expression,elevated
R4879 T7127 T7128 themeOf expression,upregulated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7228 737-761 Gene_expression denotes The expression of IL-1Ra
T7226 627-726 Gene_expression denotes the expression of IL-1Ra in tumor and spleen tissues was analyzed by immunofluorescence and western
T7225 737-820 Positive_regulation denotes The expression of IL-1Ra was upregulated in tumor and spleen tissues of the CCR5−/−
T7224 322-326 Protein denotes mice
T7222 821-825 Protein denotes mice
T7221 538-565 Protein denotes of CCR5−/− mice (Figure 4C)
T7220 250-254 Protein denotes MIG,
T7219 33-45 Protein denotes the cytokine
T7218 136-199 Protein denotes a cytokine array assay using a Mouse Proteome Array (Figure 4A)
T7217 242-248 Protein denotes IL-1Ra
T7216 642-651 Protein denotes of IL-1Ra
T7215 752-761 Protein denotes of IL-1Ra
T7214 117-121 Protein denotes mice
T7213 429-445 Protein denotes the CCR5−/− mice
T7211 375-393 Protein denotes no other cytokines
T7210 450-478 Protein denotes the CCR5+/+ mice (Figure 4B)
T7209 577-583 Protein denotes IL-1Ra
T7208 217-249 Protein denotes cytokines, the levels of IL-1Ra,
T7207 250-261 Protein denotes MIG, MIP-1α
T7206 347-351 Protein denotes mice
R4909 T7215 T7228 themeOf of IL-1Ra,The expression of IL-1Ra
R4910 T7216 T7226 themeOf of IL-1Ra,the expression of IL-1Ra in tumor and spleen tissues was analyzed by immunofluorescence and western
R4912 T7228 T7225 themeOf The expression of IL-1Ra,The expression of IL-1Ra was upregulated in tumor and spleen tissues of the CCR5−/−

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19312 199-200 . denotes .
T7091 839-840 . denotes .
T7090 838-839 -RRB- denotes )
T7089 834-838 NN denotes 4D-G
T7088 827-833 NN denotes Figure
T7087 826-827 -LRB- denotes (
T7086 821-825 NNS denotes mice
T7085 819-820 CD denotes −
T7084 818-819 VBD denotes /
T7083 817-818 NNP denotes −
T7082 813-817 NNP denotes CCR5
T7081 809-812 DT denotes the
T7080 806-808 IN denotes of
T7079 798-805 NNS denotes tissues
T7078 791-797 NN denotes spleen
T7077 787-790 CC denotes and
T7076 781-786 NN denotes tumor
T7075 778-780 IN denotes in
T7074 766-777 VBN denotes upregulated
T7073 762-765 VBD denotes was
T7072 755-761 NN denotes IL-1Ra
T7071 752-754 IN denotes of
T7070 741-751 NN denotes expression
T7069 737-740 DT denotes The
T7068 735-736 . denotes .
T7067 727-735 VBG denotes blotting
T7066 719-726 JJ denotes western
T7065 715-718 CC denotes and
T7064 696-714 NN denotes immunofluorescence
T7063 693-695 IN denotes by
T7062 684-692 VBN denotes analyzed
T7061 680-683 VBD denotes was
T7060 672-679 NNS denotes tissues
T7059 665-671 NN denotes spleen
T7058 661-664 CC denotes and
T7057 655-660 NN denotes tumor
T7056 652-654 IN denotes in
T7055 645-651 NN denotes IL-1Ra
T7054 642-644 IN denotes of
T7053 631-641 NN denotes expression
T7052 627-630 DT denotes the
T7051 625-626 , denotes ,
T7050 617-625 JJ denotes elevated
T7049 603-616 RB denotes significantly
T7048 598-602 RBS denotes most
T7047 594-597 DT denotes the
T7046 590-593 VBD denotes was
T7045 584-589 NN denotes level
T7044 577-583 JJ denotes IL-1Ra
T7043 573-576 DT denotes the
T7042 567-572 IN denotes Since
T7041 565-566 . denotes .
T7040 564-565 -RRB- denotes )
T7039 562-564 NN denotes 4C
T7038 555-561 NN denotes Figure
T7037 554-555 -LRB- denotes (
T6963 339-343 CD denotes CCR5
T6962 336-338 TO denotes to
T6961 327-335 VBN denotes compared
T6960 322-326 NNS denotes mice
T6959 320-321 NN denotes −
T6958 319-320 NN denotes /
T6957 318-319 CD denotes −
T6956 314-318 CD denotes CCR5
T6955 311-313 IN denotes in
T6954 309-310 , denotes ,
T6953 297-309 RB denotes respectively
T6952 289-296 JJ denotes 25-fold
T6951 285-288 CC denotes and
T6950 283-284 CD denotes 9
T6949 281-282 , denotes ,
T6948 278-281 CD denotes 686
T6947 272-277 IN denotes about
T6946 262-271 VBD denotes increased
T6945 255-261 NNP denotes MIP-1α
T6944 253-254 , denotes ,
T6943 250-253 NNP denotes MIG
T6942 248-249 , denotes ,
T6941 242-248 NN denotes IL-1Ra
T6940 239-241 IN denotes of
T6939 232-238 NNS denotes levels
T6938 228-231 DT denotes the
T6937 226-227 , denotes ,
T6936 217-226 NNS denotes cytokines
T6935 210-216 VBN denotes tested
T6934 207-209 CD denotes 40
T6933 201-206 IN denotes Among
T6932 199-200 . denotes .
T6931 198-199 -RRB- denotes )
T6930 196-198 NNP denotes 4A
T6929 189-195 NNP denotes Figure
T6928 188-189 -LRB- denotes (
T6927 182-187 NNP denotes Array
T6926 173-181 NNP denotes Proteome
T6925 167-172 NNP denotes Mouse
T6924 165-166 DT denotes a
T6923 159-164 VBG denotes using
T6922 153-158 NN denotes assay
T6921 147-152 NN denotes array
T6920 138-146 JJ denotes cytokine
T6919 136-137 DT denotes a
T6918 126-135 VBD denotes conducted
T6917 123-125 PRP denotes we
T6916 121-122 , denotes ,
T6915 117-121 NNS denotes mice
T6914 115-116 NN denotes −
T6913 114-115 NN denotes /
T6912 113-114 CD denotes −
T6911 109-113 CD denotes CCR5
T6910 105-108 CC denotes and
T6909 103-104 CD denotes +
T6908 102-103 VBD denotes /
T6907 101-102 NNP denotes +
T6906 97-101 NNP denotes CCR5
T6890 0-2 TO denotes To
T7036 549-553 NNS denotes mice
T7035 547-548 NN denotes −
T7034 546-547 NN denotes /
T7033 545-546 CD denotes −
T7032 541-545 CD denotes CCR5
T7031 538-540 IN denotes of
T7030 530-537 NNS denotes spleens
T7029 526-529 DT denotes the
T7028 523-525 IN denotes in
T7027 517-522 VBN denotes found
T7026 512-516 VBD denotes were
T7025 505-511 NNS denotes levels
T7024 496-504 NN denotes cytokine
T7023 488-495 JJ denotes altered
T7022 480-487 JJ denotes Similar
T7021 478-479 . denotes .
T7020 477-478 -RRB- denotes )
T7019 475-477 NN denotes 4B
T7018 468-474 NN denotes Figure
T7017 467-468 -LRB- denotes (
T7016 462-466 NNS denotes mice
T7015 460-461 CD denotes +
T7014 459-460 VBD denotes /
T7013 458-459 NNP denotes +
T7012 454-458 NNP denotes CCR5
T7011 450-453 DT denotes the
T7010 446-449 CC denotes and
T7009 441-445 NNS denotes mice
T7008 439-440 CD denotes −
T7007 438-439 VBD denotes /
T7006 437-438 NNP denotes −
T7005 433-437 NNP denotes CCR5
T7004 429-432 DT denotes the
T7003 421-428 IN denotes between
T7002 411-420 JJ denotes different
T7001 408-410 VB denotes be
T7000 405-407 TO denotes to
T6999 399-404 VBN denotes found
T6998 394-398 VBD denotes were
T6997 384-393 NNS denotes cytokines
T6996 378-383 JJ denotes other
T6995 375-377 DT denotes no
T6994 373-374 , denotes ,
T6993 364-373 NN denotes technique
T6992 359-363 DT denotes this
T6991 353-358 VBG denotes Using
T6990 351-352 . denotes .
T6989 347-351 NNS denotes mice
T6988 345-346 NN denotes +
T6987 344-345 NN denotes /
T6986 343-344 CD denotes +
T6905 93-96 DT denotes the
T6904 90-92 IN denotes of
T6903 82-89 NNS denotes tissues
T6902 75-81 NN denotes spleen
T6901 71-74 CC denotes and
T6900 65-70 NN denotes tumor
T6899 61-64 DT denotes the
T6898 53-60 IN denotes between
T6897 46-52 NNS denotes levels
T6896 37-45 NN denotes cytokine
T6895 33-36 DT denotes the
T6894 30-32 IN denotes in
T6893 19-29 NN denotes difference
T6892 15-18 DT denotes the
T6891 3-14 VB denotes investigate
R4686 T6890 T6891 aux To,investigate
R4688 T6892 T6893 det the,difference
R4689 T6893 T6891 dobj difference,investigate
R4690 T6894 T6893 prep in,difference
R4691 T6895 T6897 det the,levels
R4692 T6896 T6897 compound cytokine,levels
R4693 T6897 T6894 pobj levels,in
R4694 T6898 T6897 prep between,levels
R4695 T6899 T6900 det the,tumor
R4696 T6900 T6903 nmod tumor,tissues
R4697 T6901 T6900 cc and,tumor
R4698 T6902 T6900 conj spleen,tumor
R4699 T6903 T6898 pobj tissues,between
R4700 T6904 T6903 prep of,tissues
R4701 T6905 T6907 det the,+
R4702 T6906 T6907 compound CCR5,+
R4703 T6907 T6904 pobj +,of
R4705 T6909 T6908 dobj +,/
R4706 T6910 T6909 cc and,+
R4707 T6911 T6915 nummod CCR5,mice
R4708 T6912 T6915 nummod −,mice
R4709 T6913 T6915 nmod /,mice
R4710 T6914 T6915 compound −,mice
R4711 T6915 T6908 dobj mice,/
R4712 T6916 T6918 punct ",",conducted
R4713 T6917 T6918 nsubj we,conducted
R4714 T6918 T6918 ROOT conducted,conducted
R4715 T6919 T6922 det a,assay
R4716 T6920 T6921 amod cytokine,array
R4717 T6921 T6922 compound array,assay
R4718 T6922 T6918 dobj assay,conducted
R4719 T6923 T6918 advcl using,conducted
R4720 T6924 T6927 det a,Array
R4721 T6925 T6927 compound Mouse,Array
R4722 T6926 T6927 compound Proteome,Array
R4723 T6927 T6923 dobj Array,using
R4724 T6928 T6930 punct (,4A
R4725 T6929 T6930 compound Figure,4A
R4726 T6930 T6927 appos 4A,Array
R4727 T6931 T6930 punct ),4A
R4728 T6932 T6918 punct .,conducted
R4729 T6933 T6946 prep Among,increased
R4730 T6934 T6936 nummod 40,cytokines
R4731 T6935 T6936 amod tested,cytokines
R4732 T6936 T6933 pobj cytokines,Among
R4733 T6937 T6946 punct ",",increased
R4734 T6938 T6939 det the,levels
R4735 T6939 T6946 nsubj levels,increased
R4736 T6940 T6939 prep of,levels
R4737 T6941 T6940 pobj IL-1Ra,of
R4738 T6942 T6941 punct ",",IL-1Ra
R4739 T6943 T6941 conj MIG,IL-1Ra
R4740 T6944 T6946 punct ",",increased
R4741 T6945 T6946 nsubj MIP-1α,increased
R4742 T6946 T6946 ROOT increased,increased
R4743 T6947 T6948 advmod about,686
R4744 T6948 T6946 npadvmod 686,increased
R4745 T6949 T6948 punct ",",686
R4746 T6950 T6948 conj 9,686
R4747 T6951 T6950 cc and,9
R4748 T6952 T6950 conj 25-fold,9
R4749 T6953 T6946 advmod respectively,increased
R4750 T6954 T6946 punct ",",increased
R4751 T6955 T6946 prep in,increased
R4752 T6956 T6960 nummod CCR5,mice
R4753 T6957 T6960 nummod −,mice
R4754 T6958 T6960 compound /,mice
R4755 T6959 T6960 compound −,mice
R4756 T6960 T6955 pobj mice,in
R4757 T6961 T6946 prep compared,increased
R4758 T6962 T6961 prep to,compared
R4759 T6963 T6989 nummod CCR5,mice
R4766 T6986 T6989 nummod +,mice
R4767 T6987 T6989 compound /,mice
R4768 T6988 T6989 compound +,mice
R4769 T6989 T6962 pobj mice,to
R4770 T6990 T6946 punct .,increased
R4771 T6991 T6999 advcl Using,found
R4772 T6992 T6993 det this,technique
R4773 T6993 T6991 dobj technique,Using
R4774 T6994 T6999 punct ",",found
R4775 T6995 T6997 det no,cytokines
R4776 T6996 T6997 amod other,cytokines
R4777 T6997 T6999 nsubjpass cytokines,found
R4778 T6998 T6999 auxpass were,found
R4779 T6999 T6999 ROOT found,found
R4780 T7000 T7001 aux to,be
R4781 T7001 T6999 xcomp be,found
R4782 T7002 T7001 acomp different,be
R4783 T7003 T7002 prep between,different
R4784 T7004 T7006 det the,−
R4785 T7005 T7006 compound CCR5,−
R4786 T7006 T7003 pobj −,between
R4787 T7007 T6999 advcl /,found
R4788 T7008 T7009 nummod −,mice
R4789 T7009 T7007 dobj mice,/
R4790 T7010 T7009 cc and,mice
R4791 T7011 T7013 det the,+
R4792 T7012 T7013 compound CCR5,+
R4793 T7013 T7014 nsubj +,/
R4794 T7014 T7007 conj /,/
R4795 T7015 T7016 nummod +,mice
R4796 T7016 T7014 dobj mice,/
R4797 T7017 T7019 punct (,4B
R4798 T7018 T7019 compound Figure,4B
R4799 T7019 T7016 appos 4B,mice
R4800 T7020 T7016 punct ),mice
R4801 T7021 T7014 punct .,/
R4802 T7022 T7025 amod Similar,levels
R4803 T7023 T7025 amod altered,levels
R4804 T7024 T7025 compound cytokine,levels
R4805 T7025 T7027 nsubjpass levels,found
R4806 T7026 T7027 auxpass were,found
R4807 T7027 T7027 ROOT found,found
R4808 T7028 T7027 prep in,found
R4809 T7029 T7030 det the,spleens
R4810 T7030 T7028 pobj spleens,in
R4811 T7031 T7030 prep of,spleens
R4812 T7032 T7036 nummod CCR5,mice
R4813 T7033 T7036 nummod −,mice
R4814 T7034 T7036 nmod /,mice
R4815 T7035 T7036 compound −,mice
R4816 T7036 T7031 pobj mice,of
R4817 T7037 T7039 punct (,4C
R4818 T7038 T7039 compound Figure,4C
R4819 T7039 T7036 appos 4C,mice
R4820 T7040 T7027 punct ),found
R4821 T7041 T7027 punct .,found
R4822 T7042 T7046 mark Since,was
R4823 T7043 T7045 det the,level
R4824 T7044 T7045 amod IL-1Ra,level
R4825 T7045 T7046 nsubj level,was
R4826 T7046 T7062 advcl was,analyzed
R4827 T7047 T7050 det the,elevated
R4828 T7048 T7050 advmod most,elevated
R4829 T7049 T7050 advmod significantly,elevated
R4830 T7050 T7046 attr elevated,was
R4831 T7051 T7050 punct ",",elevated
R4832 T7052 T7053 det the,expression
R4833 T7053 T7062 nsubjpass expression,analyzed
R4834 T7054 T7053 prep of,expression
R4835 T7055 T7054 pobj IL-1Ra,of
R4836 T7056 T7053 prep in,expression
R4837 T7057 T7060 nmod tumor,tissues
R4838 T7058 T7057 cc and,tumor
R4839 T7059 T7057 conj spleen,tumor
R4840 T7060 T7056 pobj tissues,in
R4841 T7061 T7062 auxpass was,analyzed
R4842 T7062 T7062 ROOT analyzed,analyzed
R4843 T7063 T7062 agent by,analyzed
R4844 T7064 T7063 pobj immunofluorescence,by
R4845 T7065 T7064 cc and,immunofluorescence
R4846 T7066 T7064 conj western,immunofluorescence
R4847 T7067 T7064 conj blotting,immunofluorescence
R4848 T7068 T7062 punct .,analyzed
R4849 T7069 T7070 det The,expression
R4850 T7070 T7074 nsubjpass expression,upregulated
R4851 T7071 T7070 prep of,expression
R4852 T7072 T7071 pobj IL-1Ra,of
R4853 T7073 T7074 auxpass was,upregulated
R4854 T7074 T7074 ROOT upregulated,upregulated
R4855 T7075 T7074 prep in,upregulated
R4856 T7076 T7075 pobj tumor,in
R4857 T7077 T7076 cc and,tumor
R4858 T7078 T7076 conj spleen,tumor
R4859 T7079 T7084 nsubj tissues,/
R4860 T7080 T7079 prep of,tissues
R4861 T7081 T7083 det the,−
R4862 T7082 T7083 compound CCR5,−
R4863 T7083 T7080 pobj −,of
R4864 T7084 T7084 ROOT /,/
R4865 T7085 T7086 nummod −,mice
R4866 T7086 T7084 dobj mice,/
R4867 T7087 T7089 punct (,4D-G
R4868 T7088 T7089 compound Figure,4D-G
R4869 T7089 T7086 appos 4D-G,mice
R4870 T7090 T7086 punct ),mice
R4871 T7091 T7084 punct .,/

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7187 766-777 Positive_regulation denotes upregulated
T7186 741-751 Gene_expression denotes expression
T7185 755-761 Protein denotes IL-1Ra
T7184 617-625 Positive_regulation denotes elevated
T7183 631-641 Gene_expression denotes expression
T7182 617-625 Positive_regulation denotes elevated
T7181 645-651 Protein denotes IL-1Ra
T7180 577-583 Protein denotes IL-1Ra
T7179 262-271 Positive_regulation denotes increased
T7178 262-271 Positive_regulation denotes increased
T7177 262-271 Positive_regulation denotes increased
T7176 339-343 Protein denotes CCR5
T7175 255-261 Protein denotes MIP-1α
T7174 250-253 Protein denotes MIG
T7173 242-248 Protein denotes IL-1Ra
T7172 97-101 Protein denotes CCR5
R4892 T7173 T7177 themeOf IL-1Ra,increased
R4893 T7174 T7178 themeOf MIG,increased
R4894 T7175 T7179 themeOf MIP-1α,increased
R4895 T7180 T7182 themeOf IL-1Ra,elevated
R4896 T7181 T7183 themeOf IL-1Ra,expression
R4897 T7183 T7184 themeOf expression,elevated
R4898 T7185 T7186 themeOf IL-1Ra,expression
R4899 T7186 T7187 themeOf expression,upregulated