PMC:3333881 / 5848-6560
Annnotations
2_test
{"project":"2_test","denotations":[{"id":"22187158-17942396-77584437","span":{"begin":229,"end":231},"obj":"17942396"}],"text":"Plasmids\nThe plasmids pcDNA-3xHA-IκB-α, p3xFLAG-CMV-Tat, p3xFLAG-CMV-Tat C(22,25,27)A, p3xFLAG-CMV-Tat R(49,52,53,55,56,57)A, pGEX-2T-Tat, pGEX-2T-Tat C(22,25,27)A and pGEX-2T-Tat R(49,52,53,55,56,57)A were previously described (50). The plasmids pNL4-3.Luc.R-E- and pHXB2-env were obtained from the AIDS Research \u0026 Reference Reagent Program, Division of AIDS, NIAID, NIH, USA; pκBluc and pSV-β-Gal were purchased from Promega (Madison, WI, USA). The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data."}
pmc-enju-pas
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plasmids pcDNA-3xHA-IκB-α, p3xFLAG-CMV-Tat, p3xFLAG-CMV-Tat C(22,25,27)A, p3xFLAG-CMV-Tat R(49,52,53,55,56,57)A, pGEX-2T-Tat, pGEX-2T-Tat C(22,25,27)A and pGEX-2T-Tat R(49,52,53,55,56,57)A were previously described (50). 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bionlp-st-ge-2016-spacy-parsed
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The plasmids pNL4-3.Luc.R-E- and pHXB2-env were obtained from the AIDS Research \u0026 Reference Reagent Program, Division of AIDS, NIAID, NIH, USA; pκBluc and pSV-β-Gal were purchased from Promega (Madison, WI, USA). The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data."}
sentences
{"project":"sentences","denotations":[{"id":"T4409","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T4410","span":{"begin":9,"end":233},"obj":"Sentence"},{"id":"T4411","span":{"begin":234,"end":446},"obj":"Sentence"},{"id":"T4412","span":{"begin":447,"end":712},"obj":"Sentence"},{"id":"T37","span":{"begin":0,"end":8},"obj":"Sentence"},{"id":"T38","span":{"begin":9,"end":233},"obj":"Sentence"},{"id":"T39","span":{"begin":234,"end":446},"obj":"Sentence"},{"id":"T40","span":{"begin":447,"end":712},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Plasmids\nThe plasmids pcDNA-3xHA-IκB-α, p3xFLAG-CMV-Tat, p3xFLAG-CMV-Tat C(22,25,27)A, p3xFLAG-CMV-Tat R(49,52,53,55,56,57)A, pGEX-2T-Tat, pGEX-2T-Tat C(22,25,27)A and pGEX-2T-Tat R(49,52,53,55,56,57)A were previously described (50). The plasmids pNL4-3.Luc.R-E- and pHXB2-env were obtained from the AIDS Research \u0026 Reference Reagent Program, Division of AIDS, NIAID, NIH, USA; pκBluc and pSV-β-Gal were purchased from Promega (Madison, WI, USA). The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data."}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T4840","span":{"begin":28,"end":38},"obj":"Protein"},{"id":"T4841","span":{"begin":52,"end":55},"obj":"Protein"},{"id":"T4842","span":{"begin":69,"end":85},"obj":"Protein"},{"id":"T4843","span":{"begin":99,"end":124},"obj":"Protein"},{"id":"T4844","span":{"begin":134,"end":137},"obj":"Protein"},{"id":"T4845","span":{"begin":147,"end":163},"obj":"Protein"},{"id":"T4846","span":{"begin":176,"end":201},"obj":"Protein"},{"id":"T4847","span":{"begin":273,"end":276},"obj":"Protein"},{"id":"T4848","span":{"begin":393,"end":398},"obj":"Protein"},{"id":"T4849","span":{"begin":468,"end":476},"obj":"Protein"},{"id":"T4850","span":{"begin":486,"end":496},"obj":"Protein"},{"id":"T4851","span":{"begin":513,"end":523},"obj":"Protein"},{"id":"T4852","span":{"begin":546,"end":561},"obj":"Protein"},{"id":"T4853","span":{"begin":575,"end":588},"obj":"Protein"},{"id":"T4854","span":{"begin":598,"end":613},"obj":"Protein"},{"id":"T4855","span":{"begin":623,"end":636},"obj":"Protein"},{"id":"T4856","span":{"begin":653,"end":656},"obj":"Protein"}],"text":"Plasmids\nThe plasmids pcDNA-3xHA-IκB-α, p3xFLAG-CMV-Tat, p3xFLAG-CMV-Tat C(22,25,27)A, p3xFLAG-CMV-Tat R(49,52,53,55,56,57)A, pGEX-2T-Tat, pGEX-2T-Tat C(22,25,27)A and pGEX-2T-Tat R(49,52,53,55,56,57)A were previously described (50). The plasmids pNL4-3.Luc.R-E- and pHXB2-env were obtained from the AIDS Research \u0026 Reference Reagent Program, Division of AIDS, NIAID, NIH, USA; pκBluc and pSV-β-Gal were purchased from Promega (Madison, WI, USA). The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data."}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T4857","span":{"begin":13,"end":38},"obj":"Protein"},{"id":"T4858","span":{"begin":267,"end":272},"obj":"Protein"},{"id":"T4859","span":{"begin":273,"end":276},"obj":"Protein"},{"id":"T4860","span":{"begin":378,"end":384},"obj":"Protein"}],"text":"Plasmids\nThe plasmids pcDNA-3xHA-IκB-α, p3xFLAG-CMV-Tat, p3xFLAG-CMV-Tat C(22,25,27)A, p3xFLAG-CMV-Tat R(49,52,53,55,56,57)A, pGEX-2T-Tat, pGEX-2T-Tat C(22,25,27)A and pGEX-2T-Tat R(49,52,53,55,56,57)A were previously described (50). The plasmids pNL4-3.Luc.R-E- and pHXB2-env were obtained from the AIDS Research \u0026 Reference Reagent Program, Division of AIDS, NIAID, NIH, USA; pκBluc and pSV-β-Gal were purchased from Promega (Madison, WI, USA). The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data."}
test2
{"project":"test2","denotations":[{"id":"T4375","span":{"begin":28,"end":38},"obj":"Protein"},{"id":"T4376","span":{"begin":52,"end":55},"obj":"Protein"},{"id":"T4377","span":{"begin":69,"end":85},"obj":"Protein"},{"id":"T4378","span":{"begin":99,"end":124},"obj":"Protein"},{"id":"T4379","span":{"begin":134,"end":137},"obj":"Protein"},{"id":"T4380","span":{"begin":147,"end":163},"obj":"Protein"},{"id":"T4381","span":{"begin":176,"end":201},"obj":"Protein"},{"id":"T4382","span":{"begin":273,"end":276},"obj":"Protein"},{"id":"T4383","span":{"begin":393,"end":398},"obj":"Protein"},{"id":"T4384","span":{"begin":468,"end":476},"obj":"Protein"},{"id":"T4385","span":{"begin":486,"end":496},"obj":"Protein"},{"id":"T4386","span":{"begin":513,"end":523},"obj":"Protein"},{"id":"T4387","span":{"begin":546,"end":561},"obj":"Protein"},{"id":"T4388","span":{"begin":575,"end":588},"obj":"Protein"},{"id":"T4389","span":{"begin":598,"end":613},"obj":"Protein"},{"id":"T4390","span":{"begin":623,"end":636},"obj":"Protein"},{"id":"T4391","span":{"begin":653,"end":656},"obj":"Protein"}],"text":"Plasmids\nThe plasmids pcDNA-3xHA-IκB-α, p3xFLAG-CMV-Tat, p3xFLAG-CMV-Tat C(22,25,27)A, p3xFLAG-CMV-Tat R(49,52,53,55,56,57)A, pGEX-2T-Tat, pGEX-2T-Tat C(22,25,27)A and pGEX-2T-Tat R(49,52,53,55,56,57)A were previously described (50). The plasmids pNL4-3.Luc.R-E- and pHXB2-env were obtained from the AIDS Research \u0026 Reference Reagent Program, Division of AIDS, NIAID, NIH, USA; pκBluc and pSV-β-Gal were purchased from Promega (Madison, WI, USA). The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data."}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T4392","span":{"begin":28,"end":38},"obj":"Protein"},{"id":"T4393","span":{"begin":52,"end":55},"obj":"Protein"},{"id":"T4394","span":{"begin":69,"end":85},"obj":"Protein"},{"id":"T4395","span":{"begin":99,"end":124},"obj":"Protein"},{"id":"T4396","span":{"begin":134,"end":137},"obj":"Protein"},{"id":"T4397","span":{"begin":147,"end":163},"obj":"Protein"},{"id":"T4398","span":{"begin":176,"end":201},"obj":"Protein"},{"id":"T4399","span":{"begin":273,"end":276},"obj":"Protein"},{"id":"T4400","span":{"begin":393,"end":398},"obj":"Protein"},{"id":"T4401","span":{"begin":468,"end":476},"obj":"Protein"},{"id":"T4402","span":{"begin":486,"end":496},"obj":"Protein"},{"id":"T4403","span":{"begin":513,"end":523},"obj":"Protein"},{"id":"T4404","span":{"begin":546,"end":561},"obj":"Protein"},{"id":"T4405","span":{"begin":575,"end":588},"obj":"Protein"},{"id":"T4406","span":{"begin":598,"end":613},"obj":"Protein"},{"id":"T4407","span":{"begin":623,"end":636},"obj":"Protein"},{"id":"T4408","span":{"begin":653,"end":656},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Plasmids\nThe plasmids pcDNA-3xHA-IκB-α, p3xFLAG-CMV-Tat, p3xFLAG-CMV-Tat C(22,25,27)A, p3xFLAG-CMV-Tat R(49,52,53,55,56,57)A, pGEX-2T-Tat, pGEX-2T-Tat C(22,25,27)A and pGEX-2T-Tat R(49,52,53,55,56,57)A were previously described (50). The plasmids pNL4-3.Luc.R-E- and pHXB2-env were obtained from the AIDS Research \u0026 Reference Reagent Program, Division of AIDS, NIAID, NIH, USA; pκBluc and pSV-β-Gal were purchased from Promega (Madison, WI, USA). The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T4549","span":{"begin":52,"end":55},"obj":"P04605"},{"id":"T4550","span":{"begin":52,"end":55},"obj":"P04608"},{"id":"T4551","span":{"begin":52,"end":55},"obj":"P04610"},{"id":"T4552","span":{"begin":52,"end":55},"obj":"Q8UMQ1"},{"id":"T4553","span":{"begin":69,"end":72},"obj":"P04608"},{"id":"T4554","span":{"begin":69,"end":72},"obj":"P04605"},{"id":"T4555","span":{"begin":69,"end":72},"obj":"Q8UMQ1"},{"id":"T4556","span":{"begin":69,"end":72},"obj":"P04610"},{"id":"T4557","span":{"begin":99,"end":102},"obj":"P04608"},{"id":"T4558","span":{"begin":99,"end":102},"obj":"P04605"},{"id":"T4559","span":{"begin":99,"end":102},"obj":"P04610"},{"id":"T4560","span":{"begin":99,"end":102},"obj":"Q8UMQ1"},{"id":"T4561","span":{"begin":134,"end":137},"obj":"P04608"},{"id":"T4562","span":{"begin":134,"end":137},"obj":"P04605"},{"id":"T4563","span":{"begin":134,"end":137},"obj":"Q8UMQ1"},{"id":"T4564","span":{"begin":134,"end":137},"obj":"P04610"},{"id":"T4565","span":{"begin":147,"end":150},"obj":"P04608"},{"id":"T4566","span":{"begin":147,"end":150},"obj":"P04605"},{"id":"T4567","span":{"begin":147,"end":150},"obj":"Q8UMQ1"},{"id":"T4568","span":{"begin":147,"end":150},"obj":"P04610"},{"id":"T4569","span":{"begin":176,"end":179},"obj":"P04610"},{"id":"T4570","span":{"begin":176,"end":179},"obj":"P04608"},{"id":"T4571","span":{"begin":176,"end":179},"obj":"P04605"},{"id":"T4572","span":{"begin":176,"end":179},"obj":"Q8UMQ1"},{"id":"T4573","span":{"begin":273,"end":276},"obj":"P04578"},{"id":"T4574","span":{"begin":473,"end":476},"obj":"P21579"},{"id":"T4575","span":{"begin":473,"end":476},"obj":"Q04206"},{"id":"T4576","span":{"begin":546,"end":549},"obj":"Q8UMQ1"},{"id":"T4577","span":{"begin":546,"end":549},"obj":"P04610"},{"id":"T4578","span":{"begin":546,"end":549},"obj":"P04608"},{"id":"T4579","span":{"begin":546,"end":549},"obj":"P04605"},{"id":"T4580","span":{"begin":575,"end":578},"obj":"Q8UMQ1"},{"id":"T4581","span":{"begin":575,"end":578},"obj":"P04610"},{"id":"T4582","span":{"begin":575,"end":578},"obj":"P04608"},{"id":"T4583","span":{"begin":575,"end":578},"obj":"P04605"},{"id":"T4584","span":{"begin":598,"end":601},"obj":"Q8UMQ1"},{"id":"T4585","span":{"begin":598,"end":601},"obj":"P04610"},{"id":"T4586","span":{"begin":598,"end":601},"obj":"P04608"},{"id":"T4587","span":{"begin":598,"end":601},"obj":"P04605"},{"id":"T4588","span":{"begin":623,"end":626},"obj":"Q8UMQ1"},{"id":"T4589","span":{"begin":623,"end":626},"obj":"P04610"},{"id":"T4590","span":{"begin":623,"end":626},"obj":"P04608"},{"id":"T4591","span":{"begin":623,"end":626},"obj":"P04605"},{"id":"T4592","span":{"begin":653,"end":656},"obj":"Q8UMQ1"},{"id":"T4593","span":{"begin":653,"end":656},"obj":"P04610"},{"id":"T4594","span":{"begin":653,"end":656},"obj":"P04608"},{"id":"T4595","span":{"begin":653,"end":656},"obj":"P04605"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Plasmids\nThe plasmids pcDNA-3xHA-IκB-α, p3xFLAG-CMV-Tat, p3xFLAG-CMV-Tat C(22,25,27)A, p3xFLAG-CMV-Tat R(49,52,53,55,56,57)A, pGEX-2T-Tat, pGEX-2T-Tat C(22,25,27)A and pGEX-2T-Tat R(49,52,53,55,56,57)A were previously described (50). The plasmids pNL4-3.Luc.R-E- and pHXB2-env were obtained from the AIDS Research \u0026 Reference Reagent Program, Division of AIDS, NIAID, NIH, USA; pκBluc and pSV-β-Gal were purchased from Promega (Madison, WI, USA). The plasmids pRc/CMV-3xHA-p65, pRc/CMV-3xHA-p65ΔC(1–318), pRc/CMV-3xHA-p65ΔN(122–551), p3xFLAG-CMV-Tat T,N(23,24)A, p3xFLAG-CMV-Tat K(50,51)A, pGEX-2T-Tat T,N(23,24)A, pGEX-2T-Tat K(50,51)A and pNL4-3.FLAG-Tat.R-E- were generated as described in Supplementary Data."}