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PMC:3333881 / 32436-32715 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27474 0-9 JJ denotes Real-time
T27475 10-13 NN denotes PCR
T27476 14-17 VB denotes was
T27477 18-27 VB denotes performed
T27478 28-32 IN denotes with
T27479 33-40 NN denotes primers
T27480 41-49 JJ denotes specific
T27481 50-53 IN denotes for
T27482 54-57 DT denotes the
T27483 58-67 VB denotes indicated
T27484 68-78 NN denotes promoters.
T27485 79-80 -LRB- denotes (
T27486 80-81 NN denotes J
T27487 81-82 -RRB- denotes )
T27488 83-87 NN denotes HeLa
T27489 88-93 NN denotes cells
T27490 94-95 -LRB- denotes (
T27491 95-102 CD denotes 5 × 106
T27492 102-103 -RRB- denotes )
T27493 104-108 VB denotes were
T27494 109-120 VB denotes transfected
T27495 121-125 IN denotes with
T27496 126-131 JJ denotes empty
T27497 132-138 NN denotes vector
T27498 138-139 -COMMA- denotes ,
T27499 140-151 NN denotes p3xFLAG-Tat
T27500 152-153 -LRB- denotes (
T27501 153-158 NN denotes 10 µg
T27502 158-159 -RRB- denotes )
T27503 159-160 -COMMA- denotes ,
T27504 161-163 CC denotes or
T27505 164-169 JJ denotes empty
T27506 170-176 NN denotes vector
T27507 177-181 CC denotes plus
T27508 182-187 NN denotes siRNA
T27509 188-193 NN denotes IκB-α
T27510 194-196 CC denotes or
T27511 197-202 NN denotes siRNA
T27512 203-210 NN denotes control
T27513 211-212 -LRB- denotes (
T27514 212-220 NN denotes 200 pmol
T27515 220-221 -RRB- denotes )
T27516 221-222 -COLON- denotes ;
T27517 223-227 NN denotes 48 h
T27518 228-233 RB denotes later
T27519 233-234 -COMMA- denotes ,
T27520 235-239 NN denotes ChIP
T27521 240-243 VB denotes was
T27522 244-253 VB denotes performed
T27523 254-258 IN denotes with
T27524 259-269 JJ denotes anti-IκB-α
T27525 270-278 NN denotes antibody
R21575 T27475 T27474 arg1Of PCR,Real-time
R21576 T27475 T27476 arg1Of PCR,was
R21577 T27475 T27477 arg2Of PCR,performed
R21578 T27477 T27476 arg2Of performed,was
R21579 T27477 T27478 arg1Of performed,with
R21580 T27479 T27478 arg2Of primers,with
R21581 T27479 T27480 arg1Of primers,specific
R21582 T27480 T27481 arg1Of specific,for
R21583 T27484 T27481 arg2Of promoters.,for
R21584 T27484 T27482 arg1Of promoters.,the
R21585 T27484 T27483 arg2Of promoters.,indicated
R21586 T27484 T27485 arg1Of promoters.,(
R21587 T27486 T27485 arg2Of J,(
R21588 T27487 T27485 arg3Of ),(
R21589 T27489 T27488 arg1Of cells,HeLa
R21590 T27489 T27490 arg1Of cells,(
R21591 T27489 T27493 arg1Of cells,were
R21592 T27489 T27494 arg2Of cells,transfected
R21593 T27491 T27490 arg2Of 5 × 106,(
R21594 T27492 T27490 arg3Of ),(
R21595 T27494 T27476 modOf transfected,was
R21596 T27494 T27493 arg2Of transfected,were
R21597 T27494 T27495 arg1Of transfected,with
R21598 T27494 T27516 arg1Of transfected,;
R21599 T27497 T27496 arg1Of vector,empty
R21600 T27497 T27498 arg1Of vector,","
R21601 T27498 T27504 arg1Of ",",or
R21602 T27499 T27498 arg2Of p3xFLAG-Tat,","
R21603 T27499 T27500 arg1Of p3xFLAG-Tat,(
R21604 T27501 T27500 arg2Of 10 µg,(
R21605 T27502 T27500 arg3Of ),(
R21606 T27504 T27503 arg1Of or,","
R21607 T27504 T27510 arg1Of or,or
R21608 T27506 T27505 arg1Of vector,empty
R21609 T27506 T27507 arg1Of vector,plus
R21610 T27507 T27504 arg2Of plus,or
R21611 T27509 T27507 arg2Of IκB-α,plus
R21612 T27509 T27508 arg1Of IκB-α,siRNA
R21613 T27510 T27495 arg2Of or,with
R21614 T27512 T27510 arg2Of control,or
R21615 T27512 T27511 arg1Of control,siRNA
R21616 T27512 T27513 arg1Of control,(
R21617 T27514 T27513 arg2Of 200 pmol,(
R21618 T27515 T27513 arg3Of ),(
R21619 T27518 T27517 arg1Of later,48 h
R21620 T27520 T27521 arg1Of ChIP,was
R21621 T27520 T27522 arg2Of ChIP,performed
R21622 T27522 T27516 arg2Of performed,;
R21623 T27522 T27518 arg1Of performed,later
R21624 T27522 T27519 arg1Of performed,","
R21625 T27522 T27521 arg2Of performed,was
R21626 T27522 T27523 arg1Of performed,with
R21627 T27525 T27523 arg2Of antibody,with
R21628 T27525 T27524 arg1Of antibody,anti-IκB-α

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T27860 0-9 JJ denotes Real-time
T27861 10-13 NNP denotes PCR
T27862 14-17 VBD denotes was
T27863 18-27 VBN denotes performed
T27864 28-32 IN denotes with
T27865 33-40 NNS denotes primers
T27866 41-49 JJ denotes specific
T27867 50-53 IN denotes for
T27868 54-57 DT denotes the
T27869 58-67 VBN denotes indicated
T27870 68-77 NNS denotes promoters
T27871 77-78 . denotes .
T27872 79-80 -LRB- denotes (
T27873 80-81 NNP denotes J
T27874 81-82 -RRB- denotes )
T27875 83-87 NNP denotes HeLa
T27876 88-93 NNS denotes cells
T27877 94-95 -LRB- denotes (
T27878 95-96 CD denotes 5
T27879 97-98 CD denotes ×
T27880 99-102 CD denotes 106
T27881 102-103 -RRB- denotes )
T27882 104-108 VBD denotes were
T27883 109-120 VBN denotes transfected
T27884 121-125 IN denotes with
T27885 126-131 JJ denotes empty
T27886 132-138 NN denotes vector
T27887 138-139 , denotes ,
T27888 140-151 NN denotes p3xFLAG-Tat
T27889 152-153 -LRB- denotes (
T27890 153-155 CD denotes 10
T27891 156-158 NN denotes µg
T27892 158-159 -RRB- denotes )
T27893 159-160 , denotes ,
T27894 161-163 CC denotes or
T27895 164-169 JJ denotes empty
T27896 170-176 NN denotes vector
T27897 177-181 CC denotes plus
T27898 182-187 NNP denotes siRNA
T27899 188-193 NNP denotes IκB-α
T27900 194-196 CC denotes or
T27901 197-202 NNP denotes siRNA
T27902 203-210 NN denotes control
T27903 211-212 -LRB- denotes (
T27904 212-215 CD denotes 200
T27905 216-220 NN denotes pmol
T27906 220-221 -RRB- denotes )
T27907 221-222 : denotes ;
T27908 223-225 CD denotes 48
T27909 226-227 NN denotes h
T27910 228-233 RB denotes later
T27911 233-234 , denotes ,
T27912 235-239 NNP denotes ChIP
T27913 240-243 VBD denotes was
T27914 244-253 VBN denotes performed
T27915 254-258 IN denotes with
T27916 259-269 JJ denotes anti-IκB-α
T27917 270-278 NN denotes antibody
T27918 278-279 . denotes .
R21903 T27860 T27861 compound Real-time,PCR
R21904 T27861 T27863 nsubjpass PCR,performed
R21905 T27862 T27863 auxpass was,performed
R21906 T27863 T27863 ROOT performed,performed
R21907 T27864 T27863 prep with,performed
R21908 T27865 T27864 pobj primers,with
R21909 T27866 T27865 amod specific,primers
R21910 T27867 T27866 prep for,specific
R21911 T27868 T27870 det the,promoters
R21912 T27869 T27870 amod indicated,promoters
R21913 T27870 T27867 pobj promoters,for
R21914 T27871 T27863 punct .,performed
R21915 T27872 T27883 punct (,transfected
R21916 T27873 T27876 compound J,cells
R21917 T27874 T27875 punct ),HeLa
R21918 T27875 T27876 compound HeLa,cells
R21919 T27876 T27883 nsubjpass cells,transfected
R21920 T27877 T27876 punct (,cells
R21921 T27878 T27880 nummod 5,106
R21922 T27879 T27880 nummod ×,106
R21923 T27880 T27876 appos 106,cells
R21924 T27881 T27876 punct ),cells
R21925 T27882 T27883 auxpass were,transfected
R21926 T27883 T27914 advcl transfected,performed
R21927 T27884 T27883 prep with,transfected
R21928 T27885 T27886 amod empty,vector
R21929 T27886 T27884 pobj vector,with
R21930 T27887 T27886 punct ",",vector
R21931 T27888 T27886 conj p3xFLAG-Tat,vector
R21932 T27889 T27888 punct (,p3xFLAG-Tat
R21933 T27890 T27891 nummod 10,µg
R21934 T27891 T27888 appos µg,p3xFLAG-Tat
R21935 T27892 T27888 punct ),p3xFLAG-Tat
R21936 T27893 T27888 punct ",",p3xFLAG-Tat
R21937 T27894 T27888 cc or,p3xFLAG-Tat
R21938 T27895 T27896 amod empty,vector
R21939 T27896 T27888 conj vector,p3xFLAG-Tat
R21940 T27897 T27896 cc plus,vector
R21941 T27898 T27899 compound siRNA,IκB-α
R21942 T27899 T27896 conj IκB-α,vector
R21943 T27900 T27899 cc or,IκB-α
R21944 T27901 T27902 compound siRNA,control
R21945 T27902 T27899 conj control,IκB-α
R21946 T27903 T27902 punct (,control
R21947 T27904 T27905 nummod 200,pmol
R21948 T27905 T27902 appos pmol,control
R21949 T27906 T27902 punct ),control
R21950 T27907 T27899 punct ;,IκB-α
R21951 T27908 T27909 nummod 48,h
R21952 T27909 T27910 npadvmod h,later
R21953 T27910 T27899 conj later,IκB-α
R21954 T27911 T27914 punct ",",performed
R21955 T27912 T27914 nsubjpass ChIP,performed
R21956 T27913 T27914 auxpass was,performed
R21957 T27914 T27914 ROOT performed,performed
R21958 T27915 T27914 prep with,performed
R21959 T27916 T27917 amod anti-IκB-α,antibody
R21960 T27917 T27915 pobj antibody,with
R21961 T27918 T27914 punct .,performed

GO-MF

Id Subject Object Predicate Lexical cue
T27984 270-278 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T27974 88-93 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T27977 270-278 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T27980 270-278 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T27262 0-279 Sentence denotes Real-time PCR was performed with primers specific for the indicated promoters. (J) HeLa cells (5 × 106) were transfected with empty vector, p3xFLAG-Tat (10 µg), or empty vector plus siRNA IκB-α or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-IκB-α antibody.
T194 0-279 Sentence denotes Real-time PCR was performed with primers specific for the indicated promoters. (J) HeLa cells (5 × 106) were transfected with empty vector, p3xFLAG-Tat (10 µg), or empty vector plus siRNA IκB-α or siRNA control (200 pmol); 48 h later, ChIP was performed with anti-IκB-α antibody.

events-check-again

Id Subject Object Predicate Lexical cue
T28177 148-151 Protein denotes Tat
T28178 182-193 Protein denotes siRNA IκB-α

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T28205 188-193 Protein denotes IκB-α
T28206 259-278 Protein denotes anti-IκB-α antibody

test2

Id Subject Object Predicate Lexical cue
T27221 148-151 Protein denotes Tat
T27222 182-193 Protein denotes siRNA IκB-α

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T27256 148-151 Protein denotes Tat
T27257 182-193 Protein denotes siRNA IκB-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T27617 148-151 P04610 denotes Tat
T27618 148-151 Q8UMQ1 denotes Tat
T27619 148-151 P04608 denotes Tat
T27620 148-151 P04605 denotes Tat