PMC:3333881 / 29765-29929
Annnotations
pmc-enju-pas
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bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T14191","span":{"begin":0,"end":7},"obj":"IN"},{"id":"T14192","span":{"begin":8,"end":17},"obj":"JJ"},{"id":"T14193","span":{"begin":18,"end":21},"obj":"NNP"},{"id":"T14194","span":{"begin":22,"end":35},"obj":"RB"},{"id":"T14195","span":{"begin":36,"end":45},"obj":"VBD"},{"id":"T14196","span":{"begin":46,"end":49},"obj":"DT"},{"id":"T14197","span":{"begin":50,"end":57},"obj":"JJ"},{"id":"T14198","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T14199","span":{"begin":61,"end":64},"obj":"CD"},{"id":"T14200","span":{"begin":65,"end":67},"obj":"TO"},{"id":"T14201","span":{"begin":68,"end":71},"obj":"NNP"},{"id":"T14202","span":{"begin":71,"end":72},"obj":","},{"id":"T14203","span":{"begin":73,"end":76},"obj":"DT"},{"id":"T14204","span":{"begin":77,"end":83},"obj":"JJ"},{"id":"T14205","span":{"begin":84,"end":87},"obj":"NNP"},{"id":"T14206","span":{"begin":88,"end":89},"obj":"NNP"},{"id":"T14207","span":{"begin":89,"end":90},"obj":"-LRB-"},{"id":"T14208","span":{"begin":90,"end":98},"obj":"CD"},{"id":"T14209","span":{"begin":98,"end":99},"obj":"-RRB-"},{"id":"T14210","span":{"begin":99,"end":100},"obj":"DT"},{"id":"T14211","span":{"begin":100,"end":101},"obj":","},{"id":"T14212","span":{"begin":102,"end":109},"obj":"VBG"},{"id":"T14213","span":{"begin":110,"end":113},"obj":"DT"},{"id":"T14214","span":{"begin":114,"end":121},"obj":"JJ"},{"id":"T14215","span":{"begin":122,"end":126},"obj":"NN"},{"id":"T14216","span":{"begin":127,"end":130},"obj":"IN"},{"id":"T14217","span":{"begin":131,"end":134},"obj":"NNS"},{"id":"T14218","span":{"begin":134,"end":135},"obj":","},{"id":"T14219","span":{"begin":136,"end":139},"obj":"VBD"},{"id":"T14220","span":{"begin":140,"end":151},"obj":"JJ"},{"id":"T14221","span":{"begin":152,"end":153},"obj":"-LRB-"},{"id":"T14222","span":{"begin":153,"end":159},"obj":"NN"},{"id":"T14223","span":{"begin":160,"end":162},"obj":"CD"},{"id":"T14224","span":{"begin":162,"end":163},"obj":"-RRB-"},{"id":"T14225","span":{"begin":163,"end":164},"obj":"."}],"relations":[{"id":"R11491","pred":"punct","subj":"T14209","obj":"T14206"},{"id":"R11492","pred":"intj","subj":"T14210","obj":"T14219"},{"id":"R11493","pred":"punct","subj":"T14211","obj":"T14219"},{"id":"R11494","pred":"advcl","subj":"T14212","obj":"T14219"},{"id":"R11495","pred":"det","subj":"T14213","obj":"T14215"},{"id":"R11496","pred":"amod","subj":"T14214","obj":"T14215"},{"id":"R11497","pred":"dobj","subj":"T14215","obj":"T14212"},{"id":"R11498","pred":"prep","subj":"T14216","obj":"T14215"},{"id":"R11499","pred":"pobj","subj":"T14217","obj":"T14216"},{"id":"R11500","pred":"punct","subj":"T14218","obj":"T14219"},{"id":"R11501","pred":"ROOT","subj":"T14219","obj":"T14219"},{"id":"R11502","pred":"acomp","subj":"T14220","obj":"T14219"},{"id":"R11503","pred":"punct","subj":"T14221","obj":"T14222"},{"id":"R11504","pred":"npadvmod","subj":"T14222","obj":"T14219"},{"id":"R11505","pred":"nummod","subj":"T14223","obj":"T14222"},{"id":"R11506","pred":"punct","subj":"T14224","obj":"T14222"},{"id":"R11507","pred":"punct","subj":"T14225","obj":"T14219"},{"id":"R11473","pred":"mark","subj":"T14191","obj":"T14195"},{"id":"R11474","pred":"compound","subj":"T14192","obj":"T14193"},{"id":"R11475","pred":"nsubj","subj":"T14193","obj":"T14195"},{"id":"R11476","pred":"advmod","subj":"T14194","obj":"T14195"},{"id":"R11477","pred":"ROOT","subj":"T14195","obj":"T14195"},{"id":"R11478","pred":"det","subj":"T14196","obj":"T14197"},{"id":"R11479","pred":"dobj","subj":"T14197","obj":"T14195"},{"id":"R11480","pred":"prep","subj":"T14198","obj":"T14197"},{"id":"R11481","pred":"pobj","subj":"T14199","obj":"T14198"},{"id":"R11482","pred":"prep","subj":"T14200","obj":"T14195"},{"id":"R11483","pred":"pobj","subj":"T14201","obj":"T14200"},{"id":"R11484","pred":"punct","subj":"T14202","obj":"T14201"},{"id":"R11485","pred":"det","subj":"T14203","obj":"T14206"},{"id":"R11486","pred":"amod","subj":"T14204","obj":"T14206"},{"id":"R11487","pred":"compound","subj":"T14205","obj":"T14206"},{"id":"R11488","pred":"appos","subj":"T14206","obj":"T14201"},{"id":"R11489","pred":"punct","subj":"T14207","obj":"T14206"},{"id":"R11490","pred":"appos","subj":"T14208","obj":"T14206"}],"text":"Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E)."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T14271","span":{"begin":50,"end":57},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T14272","span":{"begin":114,"end":121},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E)."}
sentences
{"project":"sentences","denotations":[{"id":"T13333","span":{"begin":0,"end":164},"obj":"Sentence"},{"id":"T180","span":{"begin":0,"end":164},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E)."}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T14744","span":{"begin":18,"end":21},"obj":"Protein"},{"id":"T14745","span":{"begin":36,"end":45},"obj":"Positive_regulation"},{"id":"T14746","span":{"begin":50,"end":57},"obj":"Binding"},{"id":"T14747","span":{"begin":61,"end":64},"obj":"Protein"},{"id":"T14748","span":{"begin":84,"end":100},"obj":"Protein"},{"id":"T14749","span":{"begin":102,"end":109},"obj":"Negative_regulation"},{"id":"T14750","span":{"begin":114,"end":121},"obj":"Binding"},{"id":"T14751","span":{"begin":122,"end":126},"obj":"Entity"},{"id":"T14752","span":{"begin":131,"end":134},"obj":"Protein"},{"id":"T14753","span":{"begin":140,"end":151},"obj":"Positive_regulation"}],"relations":[{"id":"R11831","pred":"causeOf","subj":"T14744","obj":"T14745"},{"id":"R11832","pred":"themeOf","subj":"T14746","obj":"T14745"},{"id":"R11833","pred":"themeOf","subj":"T14746","obj":"T14753"},{"id":"R11834","pred":"themeOf","subj":"T14747","obj":"T14746"},{"id":"R11835","pred":"causeOf","subj":"T14748","obj":"T14753"},{"id":"R11836","pred":"themeOf","subj":"T14751","obj":"T14749"},{"id":"R11837","pred":"partOf","subj":"T14751","obj":"T14744"},{"id":"R11838","pred":"themeOf","subj":"T14751","obj":"T14750"},{"id":"R11839","pred":"themeOf","subj":"T14752","obj":"T14750"}],"attributes":[{"id":"M217","pred":"Negation","subj":"T14753","obj":"true"}],"text":"Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E)."}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T14811","span":{"begin":61,"end":64},"obj":"Protein"},{"id":"T14812","span":{"begin":131,"end":134},"obj":"Protein"},{"id":"T14813","span":{"begin":50,"end":57},"obj":"Binding"},{"id":"T14814","span":{"begin":114,"end":121},"obj":"Binding"},{"id":"T14815","span":{"begin":36,"end":45},"obj":"Positive_regulation"}],"relations":[{"id":"R11873","pred":"themeOf","subj":"T14811","obj":"T14813"},{"id":"R11874","pred":"themeOf","subj":"T14812","obj":"T14814"},{"id":"R11875","pred":"themeOf","subj":"T14813","obj":"T14815"}],"text":"Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E)."}
test2
{"project":"test2","denotations":[{"id":"T13228","span":{"begin":18,"end":21},"obj":"Protein"},{"id":"T13229","span":{"begin":36,"end":45},"obj":"Positive_regulation"},{"id":"T13230","span":{"begin":50,"end":57},"obj":"Binding"},{"id":"T13231","span":{"begin":61,"end":64},"obj":"Protein"},{"id":"T13232","span":{"begin":84,"end":100},"obj":"Protein"},{"id":"T13233","span":{"begin":102,"end":109},"obj":"Negative_regulation"},{"id":"T13234","span":{"begin":114,"end":121},"obj":"Binding"},{"id":"T13235","span":{"begin":131,"end":134},"obj":"Protein"}],"relations":[{"id":"R10702","pred":"causeOf","subj":"T13228","obj":"T13229"},{"id":"R10703","pred":"themeOf","subj":"T13230","obj":"T13229"},{"id":"R10704","pred":"themeOf","subj":"T13231","obj":"T13230"},{"id":"R10705","pred":"themeOf","subj":"T13235","obj":"T13234"}],"text":"Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E)."}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T13308","span":{"begin":18,"end":21},"obj":"Protein"},{"id":"T13309","span":{"begin":36,"end":45},"obj":"Positive_regulation"},{"id":"T13310","span":{"begin":50,"end":57},"obj":"Binding"},{"id":"T13311","span":{"begin":61,"end":64},"obj":"Protein"},{"id":"T13312","span":{"begin":84,"end":100},"obj":"Protein"},{"id":"T13313","span":{"begin":102,"end":109},"obj":"Negative_regulation"},{"id":"T13314","span":{"begin":114,"end":121},"obj":"Binding"},{"id":"T13315","span":{"begin":122,"end":126},"obj":"Entity"},{"id":"T13316","span":{"begin":131,"end":134},"obj":"Protein"},{"id":"T13317","span":{"begin":140,"end":151},"obj":"Positive_regulation"}],"relations":[{"id":"R10750","pred":"causeOf","subj":"T13308","obj":"T13309"},{"id":"R10751","pred":"themeOf","subj":"T13310","obj":"T13309"},{"id":"R10752","pred":"themeOf","subj":"T13310","obj":"T13317"},{"id":"R10753","pred":"themeOf","subj":"T13311","obj":"T13310"},{"id":"R10754","pred":"causeOf","subj":"T13312","obj":"T13317"},{"id":"R10755","pred":"themeOf","subj":"T13315","obj":"T13313"},{"id":"R10756","pred":"partOf","subj":"T13315","obj":"T13308"},{"id":"R10757","pred":"themeOf","subj":"T13315","obj":"T13314"},{"id":"R10758","pred":"themeOf","subj":"T13316","obj":"T13314"}],"attributes":[{"id":"M180","pred":"Negation","subj":"T13317","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E)."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T13837","span":{"begin":18,"end":21},"obj":"P04608"},{"id":"T13838","span":{"begin":18,"end":21},"obj":"P04610"},{"id":"T13839","span":{"begin":18,"end":21},"obj":"P04605"},{"id":"T13840","span":{"begin":18,"end":21},"obj":"Q8UMQ1"},{"id":"T13841","span":{"begin":61,"end":64},"obj":"Q04206"},{"id":"T13842","span":{"begin":61,"end":64},"obj":"P21579"},{"id":"T13843","span":{"begin":84,"end":87},"obj":"P04610"},{"id":"T13844","span":{"begin":84,"end":87},"obj":"P04608"},{"id":"T13845","span":{"begin":84,"end":87},"obj":"Q8UMQ1"},{"id":"T13846","span":{"begin":84,"end":87},"obj":"P04605"},{"id":"T13847","span":{"begin":131,"end":134},"obj":"Q04206"},{"id":"T13848","span":{"begin":131,"end":134},"obj":"P21579"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E)."}