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PMC:3333881 / 29765-29929 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13643 0-7 IN denotes Whereas
T13644 8-17 JJ denotes wild-type
T13645 18-21 NN denotes Tat
T13646 22-35 RB denotes significantly
T13647 36-45 VB denotes increased
T13648 46-49 DT denotes the
T13649 50-57 NN denotes binding
T13650 58-60 IN denotes of
T13651 61-64 NN denotes p65
T13652 65-67 TO denotes to
T13653 68-71 NN denotes DNA
T13654 71-72 -COMMA- denotes ,
T13655 73-76 DT denotes the
T13656 77-83 JJ denotes mutant
T13657 84-87 NN denotes Tat
T13658 88-89 NN denotes C
T13659 89-90 -LRB- denotes (
T13660 90-98 CD denotes 22,25,27
T13661 98-99 -RRB- denotes )
T13662 99-100 NN denotes A
T13663 100-101 -COMMA- denotes ,
T13664 102-109 VB denotes lacking
T13665 110-113 DT denotes the
T13666 114-121 VB denotes binding
T13667 122-126 NN denotes site
T13668 127-130 IN denotes for
T13669 131-134 NN denotes p65
T13670 134-135 -COMMA- denotes ,
T13671 136-139 VB denotes was
T13672 140-151 JJ denotes ineffective
T13673 152-153 -LRB- denotes (
T13674 153-159 NN denotes Figure
T13675 160-162 NN denotes 4E
T13676 162-163 -RRB- denotes )
R11073 T13645 T13644 arg1Of Tat,wild-type
R11074 T13645 T13647 arg1Of Tat,increased
R11075 T13647 T13643 arg2Of increased,Whereas
R11076 T13647 T13646 arg1Of increased,significantly
R11077 T13649 T13647 arg2Of binding,increased
R11078 T13649 T13648 arg1Of binding,the
R11079 T13649 T13650 arg1Of binding,of
R11080 T13649 T13652 arg1Of binding,to
R11081 T13651 T13650 arg2Of p65,of
R11082 T13653 T13652 arg2Of DNA,to
R11083 T13660 T13659 arg2Of "22,25,27",(
R11084 T13661 T13659 arg3Of ),(
R11085 T13662 T13655 arg1Of A,the
R11086 T13662 T13656 arg1Of A,mutant
R11087 T13662 T13657 arg1Of A,Tat
R11088 T13662 T13658 arg1Of A,C
R11089 T13662 T13659 arg1Of A,(
R11090 T13662 T13663 arg1Of A,","
R11091 T13662 T13671 arg1Of A,was
R11092 T13662 T13672 arg1Of A,ineffective
R11093 T13664 T13663 arg2Of lacking,","
R11094 T13667 T13664 arg2Of site,lacking
R11095 T13667 T13665 arg1Of site,the
R11096 T13667 T13666 arg1Of site,binding
R11097 T13667 T13668 arg1Of site,for
R11098 T13669 T13668 arg2Of p65,for
R11099 T13671 T13643 arg1Of was,Whereas
R11100 T13671 T13654 arg1Of was,","
R11101 T13671 T13670 arg1Of was,","
R11102 T13672 T13671 arg2Of ineffective,was
R11103 T13672 T13673 arg1Of ineffective,(
R11104 T13675 T13673 arg2Of 4E,(
R11105 T13675 T13674 arg1Of 4E,Figure
R11106 T13676 T13673 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14191 0-7 IN denotes Whereas
T14192 8-17 JJ denotes wild-type
T14193 18-21 NNP denotes Tat
T14194 22-35 RB denotes significantly
T14195 36-45 VBD denotes increased
T14196 46-49 DT denotes the
T14197 50-57 JJ denotes binding
T14198 58-60 IN denotes of
T14199 61-64 CD denotes p65
T14200 65-67 TO denotes to
T14201 68-71 NNP denotes DNA
T14202 71-72 , denotes ,
T14203 73-76 DT denotes the
T14204 77-83 JJ denotes mutant
T14205 84-87 NNP denotes Tat
T14206 88-89 NNP denotes C
T14207 89-90 -LRB- denotes (
T14208 90-98 CD denotes 22,25,27
T14209 98-99 -RRB- denotes )
T14210 99-100 DT denotes A
T14211 100-101 , denotes ,
T14212 102-109 VBG denotes lacking
T14213 110-113 DT denotes the
T14214 114-121 JJ denotes binding
T14215 122-126 NN denotes site
T14216 127-130 IN denotes for
T14217 131-134 NNS denotes p65
T14218 134-135 , denotes ,
T14219 136-139 VBD denotes was
T14220 140-151 JJ denotes ineffective
T14221 152-153 -LRB- denotes (
T14222 153-159 NN denotes Figure
T14223 160-162 CD denotes 4E
T14224 162-163 -RRB- denotes )
T14225 163-164 . denotes .
R11491 T14209 T14206 punct ),C
R11492 T14210 T14219 intj A,was
R11493 T14211 T14219 punct ",",was
R11494 T14212 T14219 advcl lacking,was
R11495 T14213 T14215 det the,site
R11496 T14214 T14215 amod binding,site
R11497 T14215 T14212 dobj site,lacking
R11498 T14216 T14215 prep for,site
R11499 T14217 T14216 pobj p65,for
R11500 T14218 T14219 punct ",",was
R11501 T14219 T14219 ROOT was,was
R11502 T14220 T14219 acomp ineffective,was
R11503 T14221 T14222 punct (,Figure
R11504 T14222 T14219 npadvmod Figure,was
R11505 T14223 T14222 nummod 4E,Figure
R11506 T14224 T14222 punct ),Figure
R11507 T14225 T14219 punct .,was
R11473 T14191 T14195 mark Whereas,increased
R11474 T14192 T14193 compound wild-type,Tat
R11475 T14193 T14195 nsubj Tat,increased
R11476 T14194 T14195 advmod significantly,increased
R11477 T14195 T14195 ROOT increased,increased
R11478 T14196 T14197 det the,binding
R11479 T14197 T14195 dobj binding,increased
R11480 T14198 T14197 prep of,binding
R11481 T14199 T14198 pobj p65,of
R11482 T14200 T14195 prep to,increased
R11483 T14201 T14200 pobj DNA,to
R11484 T14202 T14201 punct ",",DNA
R11485 T14203 T14206 det the,C
R11486 T14204 T14206 amod mutant,C
R11487 T14205 T14206 compound Tat,C
R11488 T14206 T14201 appos C,DNA
R11489 T14207 T14206 punct (,C
R11490 T14208 T14206 appos "22,25,27",C

GO-MF

Id Subject Object Predicate Lexical cue
T14271 50-57 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T14272 114-121 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T13333 0-164 Sentence denotes Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E).
T180 0-164 Sentence denotes Whereas wild-type Tat significantly increased the binding of p65 to DNA, the mutant Tat C(22,25,27)A, lacking the binding site for p65, was ineffective (Figure 4E).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T14744 18-21 Protein denotes Tat
T14745 36-45 Positive_regulation denotes increased
T14746 50-57 Binding denotes binding
T14747 61-64 Protein denotes p65
T14748 84-100 Protein denotes Tat C(22,25,27)A
T14749 102-109 Negative_regulation denotes lacking
T14750 114-121 Binding denotes binding
T14751 122-126 Entity denotes site
T14752 131-134 Protein denotes p65
T14753 140-151 Positive_regulation denotes ineffective true
R11831 T14744 T14745 causeOf Tat,increased
R11832 T14746 T14745 themeOf binding,increased
R11833 T14746 T14753 themeOf binding,ineffective
R11834 T14747 T14746 themeOf p65,binding
R11835 T14748 T14753 causeOf "Tat C(22,25,27)A",ineffective
R11836 T14751 T14749 themeOf site,lacking
R11837 T14751 T14744 partOf site,Tat
R11838 T14751 T14750 themeOf site,binding
R11839 T14752 T14750 themeOf p65,binding

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T14811 61-64 Protein denotes p65
T14812 131-134 Protein denotes p65
T14813 50-57 Binding denotes binding
T14814 114-121 Binding denotes binding
T14815 36-45 Positive_regulation denotes increased
R11873 T14811 T14813 themeOf p65,binding
R11874 T14812 T14814 themeOf p65,binding
R11875 T14813 T14815 themeOf binding,increased

test2

Id Subject Object Predicate Lexical cue
T13228 18-21 Protein denotes Tat
T13229 36-45 Positive_regulation denotes increased
T13230 50-57 Binding denotes binding
T13231 61-64 Protein denotes p65
T13232 84-100 Protein denotes Tat C(22,25,27)A
T13233 102-109 Negative_regulation denotes lacking
T13234 114-121 Binding denotes binding
T13235 131-134 Protein denotes p65
R10702 T13228 T13229 causeOf Tat,increased
R10703 T13230 T13229 themeOf binding,increased
R10704 T13231 T13230 themeOf p65,binding
R10705 T13235 T13234 themeOf p65,binding

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T13308 18-21 Protein denotes Tat
T13309 36-45 Positive_regulation denotes increased
T13310 50-57 Binding denotes binding
T13311 61-64 Protein denotes p65
T13312 84-100 Protein denotes Tat C(22,25,27)A
T13313 102-109 Negative_regulation denotes lacking
T13314 114-121 Binding denotes binding
T13315 122-126 Entity denotes site
T13316 131-134 Protein denotes p65
T13317 140-151 Positive_regulation denotes ineffective true
R10750 T13308 T13309 causeOf Tat,increased
R10751 T13310 T13309 themeOf binding,increased
R10752 T13310 T13317 themeOf binding,ineffective
R10753 T13311 T13310 themeOf p65,binding
R10754 T13312 T13317 causeOf "Tat C(22,25,27)A",ineffective
R10755 T13315 T13313 themeOf site,lacking
R10756 T13315 T13308 partOf site,Tat
R10757 T13315 T13314 themeOf site,binding
R10758 T13316 T13314 themeOf p65,binding

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13837 18-21 P04608 denotes Tat
T13838 18-21 P04610 denotes Tat
T13839 18-21 P04605 denotes Tat
T13840 18-21 Q8UMQ1 denotes Tat
T13841 61-64 Q04206 denotes p65
T13842 61-64 P21579 denotes p65
T13843 84-87 P04610 denotes Tat
T13844 84-87 P04608 denotes Tat
T13845 84-87 Q8UMQ1 denotes Tat
T13846 84-87 P04605 denotes Tat
T13847 131-134 Q04206 denotes p65
T13848 131-134 P21579 denotes p65