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PMC:3320587 / 5587-6081 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1771 482-493 NN denotes replication
T1770 476-481 NN denotes HIV-1
T1769 473-475 IN denotes of
T1768 461-472 NN denotes enhancement
T1767 449-460 JJ denotes MTb-induced
T1766 446-448 IN denotes of
T1765 436-445 NN denotes modulator
T1764 427-435 JJ denotes critical
T1763 425-426 DT denotes a
T1762 422-424 VB denotes is
T1761 416-421 NN denotes NFAT5
T1760 411-415 IN denotes that
T1759 399-410 VB denotes demonstrate
T1758 395-398 CC denotes and
T1757 393-394 -COMMA- denotes ,
T1756 385-393 NN denotes response
T1755 378-384 JJ denotes immune
T1754 371-377 JJ denotes innate
T1753 358-370 JJ denotes PRR-mediated
T1752 354-357 DT denotes the
T1751 351-353 TO denotes to
T1750 340-350 NN denotes expression
T1749 334-339 NN denotes NFAT5
T1748 331-333 IN denotes of
T1747 323-330 NN denotes stimuli
T1746 317-322 JJ denotes known
T1745 313-316 DT denotes the
T1744 306-312 VB denotes expand
T1743 298-305 NN denotes results
T1742 292-297 DT denotes these
T1741 290-291 -COMMA- denotes ,
T1740 286-290 RB denotes Thus
T1739 278-284 NN denotes manner
T1738 262-277 JJ denotes MyD88-dependent
T1737 260-261 DT denotes a
T1736 257-259 IN denotes in
T1735 247-256 NN denotes monocytes
T1734 241-246 JJ denotes human
T1733 238-240 IN denotes in
T1732 227-237 NN denotes expression
T1731 222-226 NN denotes gene
T1730 216-221 NN denotes NFAT5
T1729 206-215 VB denotes increases
T1728 196-205 NN denotes infection
T1727 192-195 NN denotes MTb
T1726 187-191 IN denotes that
T1725 175-186 VB denotes demonstrate
T1724 172-174 PRP denotes we
T1723 170-171 -COMMA- denotes ,
T1722 162-170 RB denotes Moreover
T1721 156-160 NN denotes PBMC
T1720 152-155 CC denotes and
T1719 148-151 NN denotes MDM
T1718 142-147 JJ denotes human
T1717 139-141 IN denotes in
T1716 127-138 NN denotes replication
T1715 121-126 NN denotes HIV-1
T1714 118-120 IN denotes of
T1713 106-117 NN denotes stimulation
T1712 94-105 JJ denotes MTb-induced
T1711 84-93 JJ denotes efficient
T1710 80-83 IN denotes for
T1709 69-79 NN denotes importance
T1708 61-68 JJ denotes crucial
T1707 58-60 IN denotes of
T1706 54-57 VB denotes are
T1705 49-53 NN denotes site
T1704 41-48 NN denotes binding
T1703 33-40 JJ denotes cognate
T1702 29-32 PRP-DOLLAR- denotes its
T1701 25-28 CC denotes and
T1700 19-24 NN denotes NFAT5
T1699 14-18 IN denotes that
T1698 9-13 VB denotes show
T1697 6-8 PRP denotes we
T1696 4-5 -COMMA- denotes ,
T1695 0-4 RB denotes Here
R1276 T1697 T1698 arg1Of we,show
R1277 T1698 T1695 arg1Of show,Here
R1278 T1698 T1696 arg1Of show,","
R1279 T1700 T1701 arg1Of NFAT5,and
R1280 T1701 T1706 arg1Of and,are
R1281 T1701 T1707 arg1Of and,of
R1282 T1705 T1701 arg2Of site,and
R1283 T1705 T1702 arg1Of site,its
R1284 T1705 T1703 arg1Of site,cognate
R1285 T1705 T1704 arg1Of site,binding
R1286 T1706 T1698 arg2Of are,show
R1287 T1706 T1699 arg1Of are,that
R1288 T1707 T1706 arg2Of of,are
R1289 T1709 T1707 arg2Of importance,of
R1290 T1709 T1708 arg1Of importance,crucial
R1291 T1709 T1710 arg1Of importance,for
R1292 T1713 T1710 arg2Of stimulation,for
R1293 T1713 T1711 arg1Of stimulation,efficient
R1294 T1713 T1712 arg1Of stimulation,MTb-induced
R1295 T1713 T1714 arg1Of stimulation,of
R1296 T1716 T1714 arg2Of replication,of
R1297 T1716 T1715 arg1Of replication,HIV-1
R1298 T1716 T1717 arg1Of replication,in
R1299 T1719 T1720 arg1Of MDM,and
R1300 T1720 T1717 arg2Of and,in
R1301 T1720 T1718 arg1Of and,human
R1302 T1721 T1720 arg2Of PBMC,and
R1303 T1724 T1725 arg1Of we,demonstrate
R1304 T1725 T1722 arg1Of demonstrate,Moreover
R1305 T1725 T1723 arg1Of demonstrate,","
R1306 T1728 T1727 arg1Of infection,MTb
R1307 T1728 T1729 arg1Of infection,increases
R1308 T1729 T1725 arg2Of increases,demonstrate
R1309 T1729 T1726 arg1Of increases,that
R1310 T1729 T1736 arg1Of increases,in
R1311 T1732 T1729 arg2Of expression,increases
R1312 T1732 T1730 arg1Of expression,NFAT5
R1313 T1732 T1731 arg1Of expression,gene
R1314 T1732 T1733 arg1Of expression,in
R1315 T1735 T1733 arg2Of monocytes,in
R1316 T1735 T1734 arg1Of monocytes,human
R1317 T1739 T1736 arg2Of manner,in
R1318 T1739 T1737 arg1Of manner,a
R1319 T1739 T1738 arg1Of manner,MyD88-dependent
R1320 T1743 T1742 arg1Of results,these
R1321 T1743 T1744 arg1Of results,expand
R1322 T1743 T1759 arg1Of results,demonstrate
R1323 T1744 T1758 arg1Of expand,and
R1324 T1747 T1744 arg2Of stimuli,expand
R1325 T1747 T1745 arg1Of stimuli,the
R1326 T1747 T1746 arg1Of stimuli,known
R1327 T1747 T1748 arg1Of stimuli,of
R1328 T1750 T1748 arg2Of expression,of
R1329 T1750 T1749 arg1Of expression,NFAT5
R1330 T1750 T1751 arg1Of expression,to
R1331 T1756 T1751 arg2Of response,to
R1332 T1756 T1752 arg1Of response,the
R1333 T1756 T1753 arg1Of response,PRR-mediated
R1334 T1756 T1754 arg1Of response,innate
R1335 T1756 T1755 arg1Of response,immune
R1336 T1758 T1740 arg1Of and,Thus
R1337 T1758 T1741 arg1Of and,","
R1338 T1758 T1757 arg1Of and,","
R1339 T1759 T1758 arg2Of demonstrate,and
R1340 T1761 T1762 arg1Of NFAT5,is
R1341 T1762 T1759 arg2Of is,demonstrate
R1342 T1762 T1760 arg1Of is,that
R1343 T1765 T1762 arg2Of modulator,is
R1344 T1765 T1763 arg1Of modulator,a
R1345 T1765 T1764 arg1Of modulator,critical
R1346 T1765 T1766 arg1Of modulator,of
R1347 T1768 T1766 arg2Of enhancement,of
R1348 T1768 T1767 arg1Of enhancement,MTb-induced
R1349 T1768 T1769 arg1Of enhancement,of
R1350 T1771 T1769 arg2Of replication,of
R1351 T1771 T1770 arg1Of replication,HIV-1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T997 416-421 Protein denotes NFAT5
T996 334-339 Protein denotes NFAT5
T995 262-267 Protein denotes MyD88
T994 216-221 Protein denotes NFAT5
T993 19-24 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1789 334-339 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1788 216-221 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1787 19-24 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1777 262-267 http://www.uniprot.org/uniprot/Q99836 denotes MyD88

GO-BP

Id Subject Object Predicate Lexical cue
T1034 378-393 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T1033 371-393 http://purl.obolibrary.org/obo/GO_0045824 denotes innate immune response
T1032 371-393 http://purl.obolibrary.org/obo/GO_0045089 denotes innate immune response
T1031 371-393 http://purl.obolibrary.org/obo/GO_0002218 denotes innate immune response
T1030 371-393 http://purl.obolibrary.org/obo/GO_0045088 denotes innate immune response
T1029 371-393 http://purl.obolibrary.org/obo/GO_0002227 denotes innate immune response
T1028 371-393 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T1027 222-237 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

GO-MF

Id Subject Object Predicate Lexical cue
T1043 41-48 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T941 286-494 Sentence denotes Thus, these results expand the known stimuli of NFAT5 expression to the PRR-mediated innate immune response, and demonstrate that NFAT5 is a critical modulator of MTb-induced enhancement of HIV-1 replication.
T940 162-285 Sentence denotes Moreover, we demonstrate that MTb infection increases NFAT5 gene expression in human monocytes in a MyD88-dependent manner.
T939 0-161 Sentence denotes Here, we show that NFAT5 and its cognate binding site are of crucial importance for efficient MTb-induced stimulation of HIV-1 replication in human MDM and PBMC.
T31 0-161 Sentence denotes Here, we show that NFAT5 and its cognate binding site are of crucial importance for efficient MTb-induced stimulation of HIV-1 replication in human MDM and PBMC.
T32 162-285 Sentence denotes Moreover, we demonstrate that MTb infection increases NFAT5 gene expression in human monocytes in a MyD88-dependent manner.
T33 286-494 Sentence denotes Thus, these results expand the known stimuli of NFAT5 expression to the PRR-mediated innate immune response, and demonstrate that NFAT5 is a critical modulator of MTb-induced enhancement of HIV-1 replication.

simple1

Id Subject Object Predicate Lexical cue
T1091 416-421 Protein denotes NFAT5
T1090 334-339 Protein denotes NFAT5
T1089 262-267 Protein denotes MyD88
T1088 216-221 Protein denotes NFAT5
T1087 19-24 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2693 340-350 Gene_expression denotes expression
T2692 206-215 Positive_regulation denotes increases
T2691 227-237 Gene_expression denotes expression
T2685 416-421 Protein denotes NFAT5
T2684 334-339 Protein denotes NFAT5
T2683 262-267 Protein denotes MyD88
T2682 216-221 Protein denotes NFAT5
T2681 19-24 Protein denotes NFAT5
R2084 T2682 T2691 themeOf NFAT5,expression
R2090 T2684 T2693 themeOf NFAT5,expression
R2096 T2691 T2692 themeOf expression,increases

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1874 340-350 Gene_expression denotes expression
T1873 206-215 Positive_regulation denotes increases
T1872 227-237 Gene_expression denotes expression
T1871 41-48 Binding denotes binding
T1864 416-421 Protein denotes NFAT5
T1863 334-339 Protein denotes NFAT5
T1862 262-267 Protein denotes MyD88
T1861 216-221 Protein denotes NFAT5
T1860 19-24 Protein denotes NFAT5
R1388 T1861 T1872 themeOf NFAT5,expression
R1389 T1863 T1874 themeOf NFAT5,expression
R1390 T1872 T1873 themeOf expression,increases
R1387 T1860 T1871 themeOf NFAT5,binding

DLUT931

Id Subject Object Predicate Lexical cue
T1823 340-350 Gene_expression denotes expression
T1822 206-215 Positive_regulation denotes increases
T1821 227-237 Gene_expression denotes expression
T1820 41-48 Binding denotes binding
T1813 416-421 Protein denotes NFAT5
T1812 334-339 Protein denotes NFAT5
T1811 262-267 Protein denotes MyD88
T1810 216-221 Protein denotes NFAT5
T1809 19-24 Protein denotes NFAT5
R1367 T1821 T1822 themeOf expression,increases
R1364 T1809 T1820 themeOf NFAT5,binding
R1365 T1810 T1821 themeOf NFAT5,expression
R1366 T1812 T1823 themeOf NFAT5,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2780 192-205 Regulation denotes MTb infection
T2774 216-256 Gene_expression denotes NFAT5 gene expression in human monocytes
T2773 331-350 Gene_expression denotes of NFAT5 expression
T2772 172-284 Positive_regulation denotes we demonstrate that MTb infection increases NFAT5 gene expression in human monocytes in a MyD88-dependent manner
T2767 216-221 Protein denotes NFAT5
T2763 156-160 Entity denotes PBMC
T2756 449-460 Protein denotes MTb-induced
T2752 14-24 Protein denotes that NFAT5
T2741 262-277 Protein denotes MyD88-dependent
T2740 84-105 Protein denotes efficient MTb-induced
T2733 148-151 Protein denotes MDM
T2723 334-339 Protein denotes NFAT5
T2721 192-195 Protein denotes MTb
T2720 416-421 Protein denotes NFAT5
T2717 49-53 Entity denotes site
T2712 241-256 Entity denotes human monocytes
T2695 358-370 Protein denotes PRR-mediated
R2143 T2721 T2780 themeOf MTb,MTb infection
R2144 T2723 T2773 themeOf NFAT5,of NFAT5 expression
R2156 T2767 T2774 themeOf NFAT5,NFAT5 gene expression in human monocytes
R2159 T2774 T2772 themeOf NFAT5 gene expression in human monocytes,we demonstrate that MTb infection increases NFAT5 gene expression in human monocytes in a MyD88-dependent manner
R2161 T2780 T2772 causeOf MTb infection,we demonstrate that MTb infection increases NFAT5 gene expression in human monocytes in a MyD88-dependent manner

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2624 222-226 NN denotes gene
T2623 216-221 NNP denotes NFAT5
T2622 206-215 VBZ denotes increases
T2621 196-205 NN denotes infection
T2620 192-195 NNP denotes MTb
T2619 187-191 IN denotes that
T2618 175-186 VBP denotes demonstrate
T2617 172-174 PRP denotes we
T2616 170-171 , denotes ,
T2615 162-170 RB denotes Moreover
T2614 160-161 . denotes .
T2613 156-160 NNP denotes PBMC
T2612 152-155 CC denotes and
T2611 148-151 NNP denotes MDM
T2610 142-147 JJ denotes human
T2609 139-141 IN denotes in
T2608 127-138 NN denotes replication
T2607 121-126 JJ denotes HIV-1
T2606 118-120 IN denotes of
T2605 106-117 NN denotes stimulation
T2604 94-105 JJ denotes MTb-induced
T2603 84-93 JJ denotes efficient
T2602 80-83 IN denotes for
T2601 69-79 NN denotes importance
T2600 61-68 JJ denotes crucial
T2599 58-60 IN denotes of
T2598 54-57 VBP denotes are
T2597 49-53 NN denotes site
T2596 41-48 JJ denotes binding
T2595 33-40 JJ denotes cognate
T2594 29-32 PRP$ denotes its
T2593 25-28 CC denotes and
T2592 19-24 CD denotes NFAT5
T2591 14-18 IN denotes that
T2590 9-13 VBP denotes show
T2589 6-8 PRP denotes we
T2588 4-5 , denotes ,
T2587 0-4 RB denotes Here
T2666 493-494 . denotes .
T2665 482-493 NN denotes replication
T2664 476-481 JJ denotes HIV-1
T2663 473-475 IN denotes of
T2662 461-472 NN denotes enhancement
T2661 449-460 JJ denotes MTb-induced
T2660 446-448 IN denotes of
T2659 436-445 NN denotes modulator
T2658 427-435 JJ denotes critical
T2657 425-426 DT denotes a
T2656 422-424 VBZ denotes is
T2655 416-421 NNP denotes NFAT5
T2654 411-415 DT denotes that
T2653 399-410 VB denotes demonstrate
T2652 395-398 CC denotes and
T2651 393-394 , denotes ,
T2650 385-393 NN denotes response
T2649 378-384 JJ denotes immune
T2648 371-377 NN denotes innate
T2647 358-370 JJ denotes PRR-mediated
T2646 354-357 DT denotes the
T2645 351-353 TO denotes to
T2644 340-350 NN denotes expression
T2643 334-339 CD denotes NFAT5
T2642 331-333 IN denotes of
T2641 323-330 NNS denotes stimuli
T2640 317-322 VBN denotes known
T2639 313-316 DT denotes the
T2638 306-312 VBP denotes expand
T2637 298-305 NNS denotes results
T2636 292-297 DT denotes these
T2635 290-291 , denotes ,
T2634 286-290 RB denotes Thus
T2633 284-285 . denotes .
T2632 278-284 NN denotes manner
T2631 262-277 JJ denotes MyD88-dependent
T2630 260-261 DT denotes a
T2629 257-259 IN denotes in
T2628 247-256 NNS denotes monocytes
T2627 241-246 JJ denotes human
T2626 238-240 IN denotes in
T2625 227-237 NN denotes expression
R2025 T2665 T2663 pobj replication,of
R2030 T2666 T2638 punct .,expand
R2048 T2587 T2590 advmod Here,show
R2049 T2588 T2590 punct ",",show
R2051 T2589 T2590 nsubj we,show
R2053 T2590 T2590 ROOT show,show
R2054 T2591 T2598 mark that,are
R2055 T2592 T2598 nsubj NFAT5,are
R2056 T2593 T2592 cc and,NFAT5
R2058 T2594 T2597 poss its,site
R2059 T2595 T2597 amod cognate,site
R2060 T2596 T2597 amod binding,site
R2061 T2597 T2592 conj site,NFAT5
R2063 T2598 T2590 ccomp are,show
R2065 T2599 T2598 prep of,are
R2066 T2600 T2601 amod crucial,importance
R2067 T2601 T2599 pobj importance,of
R2068 T2602 T2598 prep for,are
R2070 T2603 T2605 amod efficient,stimulation
R2071 T2604 T2605 amod MTb-induced,stimulation
R2072 T2605 T2602 pobj stimulation,for
R2073 T2606 T2605 prep of,stimulation
R2074 T2607 T2608 compound HIV-1,replication
R2078 T2608 T2606 pobj replication,of
R2079 T2609 T2605 prep in,stimulation
R2081 T2610 T2611 amod human,MDM
R2082 T2611 T2609 pobj MDM,in
R2083 T2612 T2611 cc and,MDM
R2085 T2613 T2611 conj PBMC,MDM
R2086 T2614 T2590 punct .,show
R2087 T2615 T2618 advmod Moreover,demonstrate
R2088 T2616 T2618 punct ",",demonstrate
R2089 T2617 T2618 nsubj we,demonstrate
R2091 T2618 T2618 ROOT demonstrate,demonstrate
R2092 T2619 T2622 mark that,increases
R2093 T2620 T2622 nsubj MTb,increases
R2094 T2621 T2622 nsubj infection,increases
R2095 T2622 T2618 ccomp increases,demonstrate
R2097 T2623 T2625 compound NFAT5,expression
R2098 T2624 T2625 compound gene,expression
R2099 T2625 T2622 dobj expression,increases
R2100 T2626 T2625 prep in,expression
R2101 T2627 T2628 amod human,monocytes
R2102 T2628 T2626 pobj monocytes,in
R2103 T2629 T2622 prep in,increases
R2104 T2630 T2632 det a,manner
R2105 T2631 T2632 amod MyD88-dependent,manner
R2106 T2632 T2629 pobj manner,in
R2108 T2633 T2618 punct .,demonstrate
R2109 T2634 T2638 advmod Thus,expand
R2110 T2635 T2638 punct ",",expand
R2111 T2636 T2637 det these,results
R2112 T2637 T2638 nsubj results,expand
R2113 T2638 T2638 ROOT expand,expand
R2114 T2639 T2641 det the,stimuli
R2115 T2640 T2641 amod known,stimuli
R2116 T2641 T2638 dobj stimuli,expand
R2117 T2642 T2641 prep of,stimuli
R2118 T2643 T2644 nummod NFAT5,expression
R2119 T2644 T2642 pobj expression,of
R2121 T2645 T2644 prep to,expression
R2122 T2646 T2650 det the,response
R2123 T2647 T2650 amod PRR-mediated,response
R2124 T2648 T2650 amod innate,response
R2125 T2649 T2650 amod immune,response
R2126 T2650 T2645 pobj response,to
R2127 T2651 T2638 punct ",",expand
R2128 T2652 T2638 cc and,expand
R2129 T2653 T2638 conj demonstrate,expand
R2130 T2654 T2656 mark that,is
R2131 T2655 T2656 nsubj NFAT5,is
R2132 T2656 T2653 ccomp is,demonstrate
R2133 T2657 T2659 det a,modulator
R2135 T2658 T2659 amod critical,modulator
R2136 T2659 T2656 attr modulator,is
R2137 T2660 T2659 prep of,modulator
R2138 T2661 T2662 amod MTb-induced,enhancement
R2139 T2662 T2660 pobj enhancement,of
R2140 T2663 T2662 prep of,enhancement
R2141 T2664 T2665 amod HIV-1,replication

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1926 340-350 Gene_expression denotes expression
T1925 416-421 Protein denotes NFAT5
T1924 358-361 Protein denotes PRR
T1923 334-339 Protein denotes NFAT5
T1922 206-215 Positive_regulation denotes increases
T1921 227-237 Gene_expression denotes expression
T1920 262-267 Protein denotes MyD88
T1919 216-226 Protein denotes NFAT5 gene
T1918 19-24 Protein denotes NFAT5
R1415 T1919 T1921 themeOf NFAT5 gene,expression
R1416 T1921 T1922 themeOf expression,increases
R1418 T1923 T1926 themeOf NFAT5,expression

testone

Id Subject Object Predicate Lexical cue
T879 340-350 Gene_expression denotes expression
T878 206-215 Positive_regulation denotes increases
T872 416-421 Protein denotes NFAT5
T871 334-339 Protein denotes NFAT5
T870 262-267 Protein denotes MyD88
T869 216-221 Protein denotes NFAT5
T868 19-24 Protein denotes NFAT5
R616 T871 T879 themeOf NFAT5,expression

test3

Id Subject Object Predicate Lexical cue
T923 416-421 Protein denotes NFAT5
T922 340-350 Gene_expression denotes expression
T921 334-339 Protein denotes NFAT5
T920 262-267 Protein denotes MyD88
T919 216-221 Protein denotes NFAT5
T918 19-24 Protein denotes NFAT5
T898 416-421 Protein denotes NFAT5
T897 334-339 Protein denotes NFAT5
T896 262-267 Protein denotes MyD88
T895 216-221 Protein denotes NFAT5
T894 19-24 Protein denotes NFAT5
R626 T921 T922 themeOf NFAT5,expression