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PMC:3320587 / 4764-5586 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-12359721-98010784 638-640 12359721 denotes 32

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1694 820-821 -RRB- denotes )
T1693 816-820 NN denotes PBMC
T1692 815-816 -LRB- denotes (
T1691 809-814 NN denotes cells
T1690 797-808 JJ denotes mononuclear
T1689 791-796 NN denotes blood
T1688 780-790 JJ denotes peripheral
T1687 776-779 CC denotes and
T1686 766-775 NN denotes monocytes
T1685 763-765 IN denotes in
T1684 755-762 NN denotes pathway
T1683 742-754 JJ denotes TLR-mediated
T1682 740-741 DT denotes a
T1681 736-739 IN denotes via
T1680 724-735 NN denotes replication
T1679 718-723 NN denotes HIV-1
T1678 715-717 IN denotes of
T1677 704-714 NN denotes activation
T1676 692-703 JJ denotes MTb-induced
T1675 689-691 IN denotes in
T1674 680-688 VB denotes involved
T1673 677-679 VB denotes be
T1672 672-676 RB denotes also
T1671 668-671 MD denotes may
T1670 662-667 NN denotes NFAT5
T1669 657-661 IN denotes that
T1668 646-656 VB denotes speculated
T1667 643-645 PRP denotes we
T1666 641-642 -COMMA- denotes ,
T1665 640-641 -RRB- denotes ]
T1664 638-640 CD denotes 32
T1663 637-638 -LRB- denotes [
T1662 635-636 -COMMA- denotes ,
T1661 626-635 NN denotes signaling
T1660 620-625 NN denotes MyD88
T1659 617-619 IN denotes of
T1658 606-616 JJ denotes downstream
T1657 603-605 VB denotes is
T1656 597-602 WDT denotes which
T1655 595-596 -COMMA- denotes ,
T1654 592-595 NN denotes p38
T1653 585-591 NN denotes kinase
T1652 581-584 NN denotes MAP
T1651 577-580 DT denotes the
T1650 574-576 IN denotes by
T1649 564-573 VB denotes activated
T1648 546-563 RB denotes transcriptionally
T1647 543-545 VB denotes be
T1646 540-542 TO denotes to
T1645 534-539 VB denotes shown
T1644 529-533 VB denotes been
T1643 518-528 RB denotes previously
T1642 514-517 VB denotes has
T1641 508-513 NN denotes NFAT5
T1640 503-507 IN denotes that
T1639 497-502 VB denotes Given
T1638 494-495 -RRB- denotes ]
T1637 492-494 CD denotes 31
T1636 491-492 -LRB- denotes [
T1635 489-490 -RRB- denotes )
T1634 486-489 NN denotes MDM
T1633 485-486 -LRB- denotes (
T1632 473-484 NN denotes macrophages
T1631 456-472 JJ denotes monocyte-derived
T1630 448-455 JJ denotes primary
T1629 442-447 JJ denotes human
T1628 439-441 IN denotes in
T1627 430-438 NN denotes isolates
T1626 428-429 NN denotes E
T1625 424-427 CC denotes and
T1624 422-423 -COMMA- denotes ,
T1623 421-422 NN denotes C
T1622 419-420 -COMMA- denotes ,
T1621 418-419 NN denotes B
T1620 410-417 NN denotes subtype
T1619 404-409 NN denotes HIV-1
T1618 389-403 JJ denotes representative
T1617 386-388 IN denotes of
T1616 374-385 NN denotes replication
T1615 361-373 JJ denotes constitutive
T1614 357-360 IN denotes for
T1613 348-356 VB denotes required
T1612 345-347 VB denotes is
T1611 341-344 CC denotes and
T1610 337-340 NN denotes LTR
T1609 333-336 DT denotes the
T1608 330-332 IN denotes in
T1607 323-329 NN denotes motifs
T1606 315-322 NN denotes binding
T1605 309-314 NN denotes NF-κB
T1604 304-308 NN denotes core
T1603 300-303 DT denotes the
T1602 291-299 VB denotes overlaps
T1601 286-290 NN denotes site
T1600 280-285 NN denotes NFAT5
T1599 275-279 DT denotes This
T1598 269-273 NN denotes LTRs
T1597 265-268 NN denotes SIV
T1596 261-264 CC denotes and
T1595 255-260 NN denotes HIV-2
T1594 252-254 IN denotes in
T1593 242-251 VB denotes conserved
T1592 237-241 RB denotes also
T1591 234-236 VB denotes is
T1590 230-233 CC denotes and
T1589 228-229 -COMMA- denotes ,
T1588 220-228 NN denotes subtypes
T1587 214-219 NN denotes HIV-1
T1586 210-213 DT denotes all
T1585 203-209 IN denotes across
T1584 193-202 VB denotes conserved
T1583 186-192 RB denotes highly
T1582 183-185 VB denotes is
T1581 178-182 WDT denotes that
T1580 174-177 NN denotes LTR
T1579 168-173 NN denotes HIV-1
T1578 164-167 DT denotes the
T1577 157-163 IN denotes within
T1576 152-156 NN denotes site
T1575 150-151 DT denotes a
T1574 147-149 TO denotes to
T1573 141-146 VB denotes binds
T1572 139-140 -COMMA- denotes ,
T1571 138-139 -RRB- denotes )
T1570 132-138 NN denotes TonEBP
T1569 129-131 IN denotes as
T1568 123-128 VB denotes known
T1567 118-122 RB denotes also
T1566 117-118 -LRB- denotes (
T1565 111-116 NN denotes NFAT5
T1564 109-110 -COMMA- denotes ,
T1563 103-109 NN denotes family
T1562 101-102 -RRB- denotes )
T1561 97-101 NN denotes NFAT
T1560 96-97 -LRB- denotes (
T1559 90-95 NN denotes cells
T1558 88-89 NN denotes T
T1557 78-87 VB denotes activated
T1556 75-77 IN denotes of
T1555 68-74 NN denotes factor
T1554 60-67 JJ denotes nuclear
T1553 56-59 DT denotes the
T1552 53-55 IN denotes of
T1551 46-52 NN denotes member
T1550 35-45 JJ denotes primordial
T1549 30-34 RB denotes most
T1548 26-29 DT denotes the
T1547 21-25 IN denotes that
T1546 14-20 VB denotes showed
T1545 3-13 RB denotes previously
T1544 0-2 PRP denotes We
R1113 T1544 T1546 arg1Of We,showed
R1114 T1546 T1545 arg1Of showed,previously
R1115 T1550 T1549 arg1Of primordial,most
R1116 T1551 T1548 arg1Of member,the
R1117 T1551 T1550 arg1Of member,primordial
R1118 T1551 T1552 arg1Of member,of
R1119 T1551 T1573 arg1Of member,binds
R1120 T1561 T1560 arg2Of NFAT,(
R1121 T1562 T1560 arg3Of ),(
R1122 T1563 T1552 arg2Of family,of
R1123 T1563 T1553 arg1Of family,the
R1124 T1563 T1554 arg1Of family,nuclear
R1125 T1563 T1555 arg1Of family,factor
R1126 T1563 T1556 arg1Of family,of
R1127 T1563 T1557 arg2Of family,activated
R1128 T1563 T1558 arg1Of family,T
R1129 T1563 T1559 arg1Of family,cells
R1130 T1563 T1560 arg1Of family,(
R1131 T1563 T1564 arg1Of family,","
R1132 T1565 T1564 arg2Of NFAT5,","
R1133 T1565 T1566 arg1Of NFAT5,(
R1134 T1568 T1566 arg2Of known,(
R1135 T1568 T1567 arg1Of known,also
R1136 T1568 T1569 arg1Of known,as
R1137 T1570 T1569 arg2Of TonEBP,as
R1138 T1571 T1566 arg3Of ),(
R1139 T1573 T1546 arg2Of binds,showed
R1140 T1573 T1547 arg1Of binds,that
R1141 T1573 T1572 arg1Of binds,","
R1142 T1573 T1574 arg1Of binds,to
R1143 T1576 T1574 arg2Of site,to
R1144 T1576 T1575 arg1Of site,a
R1145 T1576 T1577 arg1Of site,within
R1146 T1576 T1581 arg1Of site,that
R1147 T1576 T1582 arg1Of site,is
R1148 T1576 T1584 arg2Of site,conserved
R1149 T1576 T1591 arg1Of site,is
R1150 T1576 T1593 arg2Of site,conserved
R1151 T1580 T1577 arg2Of LTR,within
R1152 T1580 T1578 arg1Of LTR,the
R1153 T1580 T1579 arg1Of LTR,HIV-1
R1154 T1584 T1582 arg2Of conserved,is
R1155 T1584 T1583 arg1Of conserved,highly
R1156 T1584 T1585 arg1Of conserved,across
R1157 T1584 T1590 arg1Of conserved,and
R1158 T1588 T1585 arg2Of subtypes,across
R1159 T1588 T1586 arg1Of subtypes,all
R1160 T1588 T1587 arg1Of subtypes,HIV-1
R1161 T1590 T1589 arg1Of and,","
R1162 T1593 T1590 arg2Of conserved,and
R1163 T1593 T1591 arg2Of conserved,is
R1164 T1593 T1592 arg1Of conserved,also
R1165 T1593 T1594 arg1Of conserved,in
R1166 T1595 T1596 arg1Of HIV-2,and
R1167 T1597 T1596 arg2Of SIV,and
R1168 T1598 T1594 arg2Of LTRs,in
R1169 T1598 T1595 arg1Of LTRs,HIV-2
R1170 T1598 T1597 arg1Of LTRs,SIV
R1171 T1601 T1599 arg1Of site,This
R1172 T1601 T1600 arg1Of site,NFAT5
R1173 T1601 T1602 arg1Of site,overlaps
R1174 T1601 T1612 arg1Of site,is
R1175 T1601 T1613 arg2Of site,required
R1176 T1602 T1608 arg1Of overlaps,in
R1177 T1602 T1611 arg1Of overlaps,and
R1178 T1607 T1602 arg2Of motifs,overlaps
R1179 T1607 T1603 arg1Of motifs,the
R1180 T1607 T1604 arg1Of motifs,core
R1181 T1607 T1605 arg1Of motifs,NF-κB
R1182 T1607 T1606 arg1Of motifs,binding
R1183 T1610 T1608 arg2Of LTR,in
R1184 T1610 T1609 arg1Of LTR,the
R1185 T1613 T1611 arg2Of required,and
R1186 T1613 T1612 arg2Of required,is
R1187 T1613 T1614 arg1Of required,for
R1188 T1613 T1636 arg1Of required,[
R1189 T1616 T1614 arg2Of replication,for
R1190 T1616 T1615 arg1Of replication,constitutive
R1191 T1616 T1617 arg1Of replication,of
R1192 T1616 T1628 arg1Of replication,in
R1193 T1621 T1622 arg1Of B,","
R1194 T1622 T1625 arg1Of ",",and
R1195 T1623 T1622 arg2Of C,","
R1196 T1625 T1624 arg1Of and,","
R1197 T1626 T1625 arg2Of E,and
R1198 T1627 T1617 arg2Of isolates,of
R1199 T1627 T1618 arg1Of isolates,representative
R1200 T1627 T1619 arg1Of isolates,HIV-1
R1201 T1627 T1620 arg1Of isolates,subtype
R1202 T1627 T1621 arg1Of isolates,B
R1203 T1627 T1623 arg1Of isolates,C
R1204 T1627 T1626 arg1Of isolates,E
R1205 T1632 T1628 arg2Of macrophages,in
R1206 T1632 T1629 arg1Of macrophages,human
R1207 T1632 T1630 arg1Of macrophages,primary
R1208 T1632 T1631 arg1Of macrophages,monocyte-derived
R1209 T1632 T1633 arg1Of macrophages,(
R1210 T1634 T1633 arg2Of MDM,(
R1211 T1635 T1633 arg3Of ),(
R1212 T1637 T1636 arg2Of 31,[
R1213 T1638 T1636 arg3Of ],[
R1214 T1641 T1639 arg2Of NFAT5,Given
R1215 T1641 T1640 arg1Of NFAT5,that
R1216 T1641 T1642 arg1Of NFAT5,has
R1217 T1641 T1644 arg1Of NFAT5,been
R1218 T1641 T1645 arg2Of NFAT5,shown
R1219 T1641 T1647 arg1Of NFAT5,be
R1220 T1641 T1649 arg2Of NFAT5,activated
R1221 T1645 T1642 arg2Of shown,has
R1222 T1645 T1643 arg1Of shown,previously
R1223 T1645 T1644 arg2Of shown,been
R1224 T1649 T1645 arg3Of activated,shown
R1225 T1649 T1646 arg1Of activated,to
R1226 T1649 T1647 arg2Of activated,be
R1227 T1649 T1648 arg1Of activated,transcriptionally
R1228 T1654 T1649 arg1Of p38,activated
R1229 T1654 T1650 arg2Of p38,by
R1230 T1654 T1651 arg1Of p38,the
R1231 T1654 T1652 arg1Of p38,MAP
R1232 T1654 T1653 arg1Of p38,kinase
R1233 T1654 T1655 arg1Of p38,","
R1234 T1654 T1656 arg1Of p38,which
R1235 T1654 T1657 arg1Of p38,is
R1236 T1654 T1658 arg1Of p38,downstream
R1237 T1657 T1662 arg1Of is,","
R1238 T1657 T1663 arg1Of is,[
R1239 T1658 T1657 arg2Of downstream,is
R1240 T1658 T1659 arg1Of downstream,of
R1241 T1661 T1659 arg2Of signaling,of
R1242 T1661 T1660 arg1Of signaling,MyD88
R1243 T1664 T1663 arg2Of 32,[
R1244 T1665 T1663 arg3Of ],[
R1245 T1667 T1668 arg1Of we,speculated
R1246 T1668 T1657 arg3Of speculated,is
R1247 T1668 T1666 arg1Of speculated,","
R1248 T1670 T1671 arg1Of NFAT5,may
R1249 T1670 T1673 arg1Of NFAT5,be
R1250 T1670 T1674 arg2Of NFAT5,involved
R1251 T1674 T1668 arg2Of involved,speculated
R1252 T1674 T1669 arg1Of involved,that
R1253 T1674 T1671 arg2Of involved,may
R1254 T1674 T1672 arg1Of involved,also
R1255 T1674 T1673 arg2Of involved,be
R1256 T1674 T1675 arg1Of involved,in
R1257 T1674 T1681 arg1Of involved,via
R1258 T1677 T1675 arg2Of activation,in
R1259 T1677 T1676 arg1Of activation,MTb-induced
R1260 T1677 T1678 arg1Of activation,of
R1261 T1680 T1678 arg2Of replication,of
R1262 T1680 T1679 arg1Of replication,HIV-1
R1263 T1684 T1681 arg2Of pathway,via
R1264 T1684 T1682 arg1Of pathway,a
R1265 T1684 T1683 arg1Of pathway,TLR-mediated
R1266 T1684 T1685 arg1Of pathway,in
R1267 T1686 T1687 arg1Of monocytes,and
R1268 T1687 T1685 arg2Of and,in
R1269 T1691 T1687 arg2Of cells,and
R1270 T1691 T1688 arg1Of cells,peripheral
R1271 T1691 T1689 arg1Of cells,blood
R1272 T1691 T1690 arg1Of cells,mononuclear
R1273 T1691 T1692 arg1Of cells,(
R1274 T1693 T1692 arg2Of PBMC,(
R1275 T1694 T1692 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T992 662-667 Protein denotes NFAT5
T991 620-625 Protein denotes MyD88
T990 508-513 Protein denotes NFAT5
T989 132-138 Protein denotes TonEBP
T988 111-116 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1794 581-595 http://www.uniprot.org/uniprot/Q15759 denotes MAP kinase p38
T1793 581-595 http://www.uniprot.org/uniprot/P53778 denotes MAP kinase p38
T1792 581-595 http://www.uniprot.org/uniprot/O15264 denotes MAP kinase p38
T1791 581-595 http://www.uniprot.org/uniprot/Q16539 denotes MAP kinase p38
T1790 132-138 http://www.uniprot.org/uniprot/O94916 denotes TonEBP
T1786 662-667 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1785 508-513 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1784 280-285 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1783 111-116 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T1776 620-625 http://www.uniprot.org/uniprot/Q99836 denotes MyD88

UBERON-AE

Id Subject Object Predicate Lexical cue
T924 791-796 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T1010 546-563 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptionally
T1004 626-635 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T1026 592-595 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T1025 564-591 http://purl.obolibrary.org/obo/GO_0000187 denotes activated by the MAP kinase

GO-MF

Id Subject Object Predicate Lexical cue
T1042 315-322 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T1046 592-595 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T1045 309-322 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding

GO-CC

Id Subject Object Predicate Lexical cue
T1053 304-308 http://purl.obolibrary.org/obo/GO_0019013 denotes core
T1052 809-814 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1051 90-95 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T938 497-822 Sentence denotes Given that NFAT5 has previously been shown to be transcriptionally activated by the MAP kinase p38, which is downstream of MyD88 signaling, [32], we speculated that NFAT5 may also be involved in MTb-induced activation of HIV-1 replication via a TLR-mediated pathway in monocytes and peripheral blood mononuclear cells (PBMC).
T937 275-496 Sentence denotes This NFAT5 site overlaps the core NF-κB binding motifs in the LTR and is required for constitutive replication of representative HIV-1 subtype B, C, and E isolates in human primary monocyte-derived macrophages (MDM) [31].
T936 0-274 Sentence denotes We previously showed that the most primordial member of the nuclear factor of activated T cells (NFAT) family, NFAT5 (also known as TonEBP), binds to a site within the HIV-1 LTR that is highly conserved across all HIV-1 subtypes, and is also conserved in HIV-2 and SIV LTRs.
T28 0-274 Sentence denotes We previously showed that the most primordial member of the nuclear factor of activated T cells (NFAT) family, NFAT5 (also known as TonEBP), binds to a site within the HIV-1 LTR that is highly conserved across all HIV-1 subtypes, and is also conserved in HIV-2 and SIV LTRs.
T29 275-496 Sentence denotes This NFAT5 site overlaps the core NF-κB binding motifs in the LTR and is required for constitutive replication of representative HIV-1 subtype B, C, and E isolates in human primary monocyte-derived macrophages (MDM) [31].
T30 497-822 Sentence denotes Given that NFAT5 has previously been shown to be transcriptionally activated by the MAP kinase p38, which is downstream of MyD88 signaling, [32], we speculated that NFAT5 may also be involved in MTb-induced activation of HIV-1 replication via a TLR-mediated pathway in monocytes and peripheral blood mononuclear cells (PBMC).

simple1

Id Subject Object Predicate Lexical cue
T1086 662-667 Protein denotes NFAT5
T1085 620-625 Protein denotes MyD88
T1084 508-513 Protein denotes NFAT5
T1083 132-138 Protein denotes TonEBP
T1082 111-116 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2690 564-573 Positive_regulation denotes activated
T2689 141-146 Binding denotes binds
T2680 662-667 Protein denotes NFAT5
T2679 620-625 Protein denotes MyD88
T2678 508-513 Protein denotes NFAT5
T2677 132-138 Protein denotes TonEBP
T2676 111-116 Protein denotes NFAT5
R2076 T2676 T2689 themeOf NFAT5,binds
R2077 T2677 T2689 themeOf TonEBP,binds
R2080 T2678 T2690 themeOf NFAT5,activated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1870 564-573 Positive_regulation denotes activated
T1869 680-688 Positive_regulation denotes involved
T1868 141-146 Binding denotes binds
T1859 662-667 Protein denotes NFAT5
T1858 620-625 Protein denotes MyD88
T1857 508-513 Protein denotes NFAT5
T1856 132-138 Protein denotes TonEBP
T1855 111-116 Protein denotes NFAT5
R1383 T1855 T1868 themeOf NFAT5,binds
R1384 T1856 T1868 themeOf TonEBP,binds
R1385 T1857 T1870 themeOf NFAT5,activated
R1386 T1859 T1869 themeOf NFAT5,involved

DLUT931

Id Subject Object Predicate Lexical cue
T1819 680-688 Positive_regulation denotes involved
T1818 564-573 Positive_regulation denotes activated
T1817 141-146 Binding denotes binds
T1808 662-667 Protein denotes NFAT5
T1807 620-625 Protein denotes MyD88
T1806 508-513 Protein denotes NFAT5
T1805 132-138 Protein denotes TonEBP
T1804 111-116 Protein denotes NFAT5
R1360 T1804 T1817 themeOf NFAT5,binds
R1361 T1805 T1817 themeOf TonEBP,binds
R1362 T1806 T1818 themeOf NFAT5,activated
R1363 T1808 T1819 themeOf NFAT5,involved

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2779 300-341 Localization denotes the core NF-κB binding motifs in the LTR
T2775 620-642 Positive_regulation denotes MyD88 signaling, [32],
T2766 692-703 Protein denotes MTb-induced
T2760 300-340 Protein denotes the core NF-κB binding motifs in the LTR
T2757 280-285 Protein denotes NFAT5
T2755 662-667 Protein denotes NFAT5
T2745 147-156 Entity denotes to a site
T2744 486-489 Protein denotes MDM
T2743 780-814 Entity denotes peripheral blood mononuclear cells
T2736 132-138 Protein denotes TonEBP
T2735 448-464 Entity denotes primary monocyte
T2732 766-775 Entity denotes monocytes
T2731 508-513 Protein denotes NFAT5
T2726 620-625 Protein denotes MyD88
T2725 304-308 Entity denotes core
T2724 574-596 Protein denotes by the MAP kinase p38,
T2722 275-290 Entity denotes This NFAT5 site
T2711 473-490 Entity denotes macrophages (MDM)
T2706 581-584 Protein denotes MAP
T2704 88-102 Entity denotes T cells (NFAT)
T2701 111-116 Protein denotes NFAT5
T2700 574-596 Protein denotes by the MAP kinase p38,
T2694 574-596 Protein denotes by the MAP kinase p38,
R2145 T2725 T2779 locationOf core,the core NF-κB binding motifs in the LTR
R2146 T2726 T2775 causeOf MyD88,"MyD88 signaling, [32],"
R2153 T2760 T2779 themeOf the core NF-κB binding motifs in the LTR,the core NF-κB binding motifs in the LTR

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2586 821-822 . denotes .
T2585 820-821 -RRB- denotes )
T2584 816-820 NNP denotes PBMC
T2583 815-816 -LRB- denotes (
T2582 809-814 NNS denotes cells
T2581 797-808 NN denotes mononuclear
T2580 791-796 NN denotes blood
T2579 780-790 JJ denotes peripheral
T2578 776-779 CC denotes and
T2577 766-775 NNS denotes monocytes
T2576 763-765 IN denotes in
T2575 755-762 NN denotes pathway
T2574 742-754 JJ denotes TLR-mediated
T2573 740-741 DT denotes a
T2572 736-739 IN denotes via
T2571 724-735 NN denotes replication
T2570 718-723 JJ denotes HIV-1
T2569 715-717 IN denotes of
T2568 704-714 NN denotes activation
T2479 495-496 . denotes .
T2478 494-495 NNP denotes ]
T2477 492-494 CD denotes 31
T2476 491-492 NNP denotes [
T2475 489-490 -RRB- denotes )
T2474 486-489 NNP denotes MDM
T2473 485-486 -LRB- denotes (
T2472 473-484 NNS denotes macrophages
T2471 456-472 JJ denotes monocyte-derived
T2470 448-455 JJ denotes primary
T2469 442-447 JJ denotes human
T2468 439-441 IN denotes in
T2467 430-438 VBZ denotes isolates
T2466 428-429 NNP denotes E
T2465 424-427 CC denotes and
T2464 422-423 , denotes ,
T2463 421-422 NNP denotes C
T2462 419-420 , denotes ,
T2461 418-419 NNP denotes B
T2460 410-417 NN denotes subtype
T2459 404-409 NN denotes HIV-1
T2458 389-403 JJ denotes representative
T2457 386-388 IN denotes of
T2456 374-385 NN denotes replication
T2455 361-373 JJ denotes constitutive
T2454 357-360 IN denotes for
T2453 348-356 VBN denotes required
T2452 345-347 VBZ denotes is
T2451 341-344 CC denotes and
T2450 337-340 NNP denotes LTR
T2449 333-336 DT denotes the
T2448 330-332 IN denotes in
T2447 323-329 NNS denotes motifs
T2446 315-322 JJ denotes binding
T2445 309-314 NN denotes NF-κB
T2444 304-308 NN denotes core
T2443 300-303 DT denotes the
T2442 291-299 VBZ denotes overlaps
T2441 286-290 NN denotes site
T2440 280-285 CD denotes NFAT5
T2439 275-279 DT denotes This
T2438 273-274 . denotes .
T2437 269-273 NNPS denotes LTRs
T2436 265-268 NNP denotes SIV
T2435 261-264 CC denotes and
T2434 255-260 NNP denotes HIV-2
T2433 252-254 IN denotes in
T2432 242-251 VBN denotes conserved
T2431 237-241 RB denotes also
T2430 234-236 VBZ denotes is
T2429 230-233 CC denotes and
T2428 228-229 , denotes ,
T2427 220-228 NNS denotes subtypes
T2426 214-219 JJ denotes HIV-1
T2425 210-213 DT denotes all
T2424 203-209 IN denotes across
T2423 193-202 VBN denotes conserved
T2422 186-192 RB denotes highly
T2421 183-185 VBZ denotes is
T2420 178-182 WDT denotes that
T2419 174-177 NNP denotes LTR
T2418 168-173 NNP denotes HIV-1
T2417 164-167 DT denotes the
T2416 157-163 IN denotes within
T2415 152-156 NN denotes site
T2414 150-151 DT denotes a
T2413 147-149 TO denotes to
T2412 141-146 VBZ denotes binds
T2411 139-140 , denotes ,
T2410 138-139 -RRB- denotes )
T2409 132-138 NNP denotes TonEBP
T2408 129-131 IN denotes as
T2407 123-128 VBN denotes known
T2406 118-122 RB denotes also
T2405 117-118 -LRB- denotes (
T2404 111-116 NNP denotes NFAT5
T2403 109-110 , denotes ,
T2402 103-109 NN denotes family
T2401 101-102 -RRB- denotes )
T2400 97-101 NNP denotes NFAT
T2399 96-97 -LRB- denotes (
T2398 90-95 NNS denotes cells
T2397 88-89 NNP denotes T
T2396 78-87 VBN denotes activated
T2395 75-77 IN denotes of
T2394 68-74 NN denotes factor
T2393 60-67 JJ denotes nuclear
T2392 56-59 DT denotes the
T2391 53-55 IN denotes of
T2390 46-52 NN denotes member
T2389 35-45 JJ denotes primordial
T2388 30-34 RBS denotes most
T2387 26-29 DT denotes the
T2386 21-25 IN denotes that
T2385 14-20 VBD denotes showed
T2384 3-13 RB denotes previously
T2383 0-2 PRP denotes We
T2509 646-656 VBD denotes speculated
T2508 643-645 PRP denotes we
T2507 641-642 , denotes ,
T2506 640-641 NNP denotes ]
T2505 638-640 CD denotes 32
T2504 637-638 NNP denotes [
T2503 635-636 , denotes ,
T2502 626-635 VBG denotes signaling
T2501 620-625 NNP denotes MyD88
T2500 617-619 IN denotes of
T2499 606-616 JJ denotes downstream
T2498 603-605 VBZ denotes is
T2497 597-602 WDT denotes which
T2496 595-596 , denotes ,
T2495 592-595 CD denotes p38
T2494 585-591 NN denotes kinase
T2493 581-584 NNP denotes MAP
T2492 577-580 DT denotes the
T2491 574-576 IN denotes by
T2490 564-573 VBN denotes activated
T2489 546-563 RB denotes transcriptionally
T2488 543-545 VB denotes be
T2487 540-542 TO denotes to
T2486 534-539 VBN denotes shown
T2485 529-533 VBN denotes been
T2484 518-528 RB denotes previously
T2483 514-517 VBZ denotes has
T2482 508-513 NNP denotes NFAT5
T2481 503-507 IN denotes that
T2480 497-502 VBN denotes Given
T2567 692-703 JJ denotes MTb-induced
T2566 689-691 IN denotes in
T2565 680-688 VBN denotes involved
T2564 677-679 VB denotes be
T2563 672-676 RB denotes also
T2562 668-671 MD denotes may
T2561 662-667 NNP denotes NFAT5
T2560 657-661 IN denotes that
R1835 T2383 T2385 nsubj We,showed
R1836 T2384 T2385 advmod previously,showed
R1837 T2385 T2385 ROOT showed,showed
R1839 T2386 T2412 mark that,binds
R1840 T2387 T2390 det the,member
R1841 T2388 T2389 advmod most,primordial
R1843 T2389 T2390 amod primordial,member
R1844 T2390 T2412 nsubj member,binds
R1845 T2391 T2390 prep of,member
R1847 T2392 T2394 det the,factor
R1848 T2393 T2394 amod nuclear,factor
R1849 T2394 T2391 pobj factor,of
R1851 T2395 T2394 prep of,factor
R1852 T2396 T2398 amod activated,cells
R1853 T2397 T2398 compound T,cells
R1855 T2398 T2395 pobj cells,of
R1856 T2399 T2400 punct (,NFAT
R1857 T2400 T2398 appos NFAT,cells
R1936 T2458 T2461 amod representative,B
R1938 T2459 T2461 compound HIV-1,B
R1939 T2460 T2461 compound subtype,B
R1940 T2461 T2457 pobj B,of
R1942 T2462 T2461 punct ",",B
R1943 T2463 T2461 conj C,B
R1944 T2464 T2453 punct ",",required
R1946 T2465 T2453 cc and,required
R1948 T2466 T2467 nsubj E,isolates
R1949 T2467 T2453 conj isolates,required
R1951 T2468 T2467 prep in,isolates
R1952 T2469 T2472 amod human,macrophages
R1953 T2470 T2472 amod primary,macrophages
R1955 T2471 T2472 amod monocyte-derived,macrophages
R1956 T2472 T2468 pobj macrophages,in
R1957 T2473 T2476 punct (,[
R1959 T2474 T2476 nmod MDM,[
R1960 T2475 T2476 punct ),[
R1961 T2476 T2478 nmod [,]
R1962 T2480 T2509 prep Given,speculated
R1963 T2477 T2478 nummod 31,]
R1964 T2478 T2467 dobj ],isolates
R1965 T2481 T2486 mark that,shown
R1966 T2479 T2467 punct .,isolates
R1967 T2482 T2486 nsubj NFAT5,shown
R1968 T2483 T2486 aux has,shown
R1969 T2484 T2486 advmod previously,shown
R1970 T2485 T2486 auxpass been,shown
R1971 T2486 T2480 pcomp shown,Given
R1972 T2487 T2490 aux to,activated
R1973 T2488 T2490 auxpass be,activated
R1974 T2489 T2490 advmod transcriptionally,activated
R1977 T2490 T2486 xcomp activated,shown
R1978 T2491 T2490 agent by,activated
R1980 T2492 T2494 det the,kinase
R1981 T2493 T2494 compound MAP,kinase
R1985 T2494 T2491 pobj kinase,by
R1986 T2495 T2494 appos p38,kinase
R1987 T2496 T2494 punct ",",kinase
R1989 T2497 T2498 nsubj which,is
R1992 T2498 T2494 relcl is,kinase
R1995 T2499 T2498 acomp downstream,is
R1996 T2500 T2499 prep of,downstream
R1998 T2501 T2500 pobj MyD88,of
R2000 T2502 T2498 advcl signaling,is
R2002 T2503 T2502 punct ",",signaling
R2003 T2504 T2506 nmod [,]
R2007 T2505 T2506 nummod 32,]
R2009 T2506 T2502 appos ],signaling
R2010 T2507 T2509 punct ",",speculated
R2011 T2508 T2509 nsubj we,speculated
R2012 T2509 T2509 ROOT speculated,speculated
R2013 T2560 T2565 mark that,involved
R2014 T2561 T2565 nsubjpass NFAT5,involved
R2015 T2562 T2565 aux may,involved
R2018 T2563 T2564 advmod also,be
R2020 T2564 T2565 auxpass be,involved
R2021 T2565 T2509 ccomp involved,speculated
R2022 T2566 T2565 prep in,involved
R2023 T2567 T2568 amod MTb-induced,activation
R2024 T2568 T2566 pobj activation,in
R2026 T2569 T2568 prep of,activation
R2027 T2570 T2571 compound HIV-1,replication
R2028 T2571 T2569 pobj replication,of
R2029 T2572 T2565 prep via,involved
R2031 T2573 T2575 det a,pathway
R2032 T2574 T2575 amod TLR-mediated,pathway
R2033 T2575 T2572 pobj pathway,via
R2035 T2576 T2575 prep in,pathway
R2036 T2577 T2576 pobj monocytes,in
R2037 T2578 T2577 cc and,monocytes
R2038 T2579 T2582 amod peripheral,cells
R2039 T2580 T2581 compound blood,mononuclear
R2040 T2581 T2582 compound mononuclear,cells
R2041 T2582 T2577 conj cells,monocytes
R2042 T2583 T2584 punct (,PBMC
R2044 T2584 T2582 appos PBMC,cells
R2045 T2585 T2565 punct ),involved
R2046 T2586 T2509 punct .,speculated
R1860 T2401 T2400 punct ),NFAT
R1862 T2402 T2398 conj family,cells
R1863 T2403 T2402 punct ",",family
R1864 T2404 T2390 appos NFAT5,member
R1865 T2405 T2407 punct (,known
R1867 T2406 T2407 advmod also,known
R1868 T2407 T2390 acl known,member
R1869 T2408 T2407 prep as,known
R1870 T2409 T2408 pobj TonEBP,as
R1871 T2410 T2390 punct ),member
R1873 T2411 T2412 punct ",",binds
R1874 T2412 T2385 ccomp binds,showed
R1875 T2413 T2412 prep to,binds
R1877 T2414 T2415 det a,site
R1878 T2415 T2413 pobj site,to
R1879 T2416 T2415 prep within,site
R1881 T2417 T2419 det the,LTR
R1883 T2418 T2419 compound HIV-1,LTR
R1884 T2419 T2416 pobj LTR,within
R1885 T2420 T2423 nsubjpass that,conserved
R1887 T2421 T2423 auxpass is,conserved
R1888 T2422 T2423 advmod highly,conserved
R1889 T2423 T2415 relcl conserved,site
R1890 T2424 T2423 prep across,conserved
R1892 T2425 T2427 det all,subtypes
R1893 T2426 T2427 compound HIV-1,subtypes
R1894 T2427 T2424 pobj subtypes,across
R1896 T2428 T2412 punct ",",binds
R1897 T2429 T2412 cc and,binds
R1898 T2430 T2432 auxpass is,conserved
R1901 T2431 T2432 advmod also,conserved
R1903 T2432 T2412 conj conserved,binds
R1904 T2433 T2432 prep in,conserved
R1905 T2434 T2433 pobj HIV-2,in
R1907 T2435 T2434 cc and,HIV-2
R1908 T2436 T2437 compound SIV,LTRs
R1909 T2437 T2434 conj LTRs,HIV-2
R1911 T2438 T2385 punct .,showed
R1912 T2439 T2441 det This,site
R1913 T2440 T2441 nummod NFAT5,site
R1915 T2441 T2442 nsubj site,overlaps
R1916 T2442 T2442 ROOT overlaps,overlaps
R1918 T2443 T2447 det the,motifs
R1919 T2444 T2447 amod core,motifs
R1920 T2445 T2447 amod NF-κB,motifs
R1921 T2446 T2447 amod binding,motifs
R1922 T2447 T2442 dobj motifs,overlaps
R1923 T2448 T2447 prep in,motifs
R1924 T2449 T2450 det the,LTR
R1926 T2450 T2448 pobj LTR,in
R1927 T2451 T2442 cc and,overlaps
R1928 T2452 T2453 auxpass is,required
R1930 T2453 T2442 conj required,overlaps
R1931 T2454 T2453 prep for,required
R1932 T2455 T2456 amod constitutive,replication
R1934 T2456 T2454 pobj replication,for
R1935 T2457 T2456 prep of,replication

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1917 662-667 Protein denotes NFAT5
T1916 620-625 Protein denotes MyD88
T1915 581-595 Protein denotes MAP kinase p38
T1914 508-513 Protein denotes NFAT5
T1913 291-299 Binding denotes overlaps
T1912 291-299 Binding denotes overlaps
T1911 304-329 Protein denotes core NF-κB binding motifs
T1910 280-290 Protein denotes NFAT5 site
T1905 111-116 Protein denotes NFAT5
T1904 97-101 Protein denotes NFAT
T1909 141-146 Binding denotes binds
T1908 60-95 Protein denotes nuclear factor of activated T cells
T1907 168-177 Protein denotes HIV-1 LTR
T1906 132-138 Protein denotes TonEBP
R1406 T1907 T1909 themeOf HIV-1 LTR,binds
R1408 T1908 T1909 themeOf nuclear factor of activated T cells,binds
R1409 T1910 T1912 themeOf NFAT5 site,overlaps
R1410 T1910 T1913 themeOf NFAT5 site,overlaps
R1412 T1911 T1913 themeOf core NF-κB binding motifs,overlaps

testone

Id Subject Object Predicate Lexical cue
T877 141-146 Binding denotes binds
T867 662-667 Protein denotes NFAT5
T866 620-625 Protein denotes MyD88
T865 508-513 Protein denotes NFAT5
T864 132-138 Protein denotes TonEBP
T863 111-116 Protein denotes NFAT5
R614 T863 T877 themeOf NFAT5,binds
R615 T864 T877 themeOf TonEBP,binds

test3

Id Subject Object Predicate Lexical cue
T917 662-667 Protein denotes NFAT5
T916 620-625 Protein denotes MyD88
T915 564-573 Positive_regulation denotes activated
T914 508-513 Protein denotes NFAT5
T913 141-146 Binding denotes binds
T912 132-138 Protein denotes TonEBP
T911 111-116 Protein denotes NFAT5
T893 662-667 Protein denotes NFAT5
T892 620-625 Protein denotes MyD88
T891 508-513 Protein denotes NFAT5
T890 132-138 Protein denotes TonEBP
T889 111-116 Protein denotes NFAT5
R623 T911 T913 themeOf NFAT5,binds
R624 T912 T913 themeOf TonEBP,binds
R625 T914 T915 themeOf NFAT5,activated