> top > docs > PMC:3320587 > spans > 42343-42568 > annotations

PMC:3320587 / 42343-42568 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T27215 6-10 NN denotes mRNA
T27214 0-5 NN denotes NFAT5
T27260 206-215 NN denotes in human
T27259 200-205 JJ denotes ssion
T27258 198-200 IN denotes re
T27257 188-198 NN denotes 5 gene exp
T27256 184-188 NN denotes NFAT
T27255 178-183 NN denotes on of
T27254 176-178 IN denotes ti
T27253 167-176 NN denotes MTb induc
T27252 163-166 NN denotes for
T27251 159-162 IN denotes ant
T27250 150-159 JJ denotes is import
T27249 147-149 VB denotes 88
T27248 142-147 NN denotes ) MyD
T27247 141-142 -RRB- denotes B
T27246 140-141 NN denotes (
T27245 138-139 -LRB- denotes .
T27244 137-138 -RRB- denotes )
T27243 133-137 CD denotes 0.01
T27242 132-133 SYM denotes <
T27241 131-132 NN denotes p
T27240 129-130 -COMMA- denotes ,
T27239 127-129 SYM denotes **
T27238 126-127 -LRB- denotes (
T27237 122-125 NN denotes MTb
T27236 117-121 IN denotes with
T27235 108-116 VB denotes infected
T27234 105-107 CC denotes or
T27233 103-104 -RRB- denotes )
T27232 99-103 CD denotes 0.05
T27231 98-99 SYM denotes <
T27230 97-98 NN denotes p
T27229 95-96 -COMMA- denotes ,
T27228 94-95 SYM denotes *
T27227 93-94 -LRB- denotes (
T27226 85-92 NN denotes Pam3Cys
T27225 80-84 IN denotes with
T27224 70-79 VB denotes incubated
T27223 65-69 VB denotes were
T27222 59-64 NN denotes cells
T27221 55-58 DT denotes the
T27220 50-54 WRB denotes when
T27219 40-49 VB denotes increased
T27218 26-39 RB denotes significantly
T27217 22-25 VB denotes was
T27216 11-21 NN denotes expression
R19723 T27216 T27214 arg1Of expression,NFAT5
R19724 T27216 T27215 arg1Of expression,mRNA
R19725 T27216 T27217 arg1Of expression,was
R19726 T27216 T27219 arg2Of expression,increased
R19727 T27219 T27217 arg2Of increased,was
R19728 T27219 T27218 arg1Of increased,significantly
R19729 T27219 T27220 arg1Of increased,when
R19730 T27222 T27221 arg1Of cells,the
R19731 T27222 T27223 arg1Of cells,were
R19732 T27222 T27224 arg2Of cells,incubated
R19733 T27222 T27235 arg2Of cells,infected
R19734 T27224 T27225 arg1Of incubated,with
R19735 T27224 T27234 arg1Of incubated,or
R19736 T27226 T27225 arg2Of Pam3Cys,with
R19737 T27226 T27227 arg1Of Pam3Cys,(
R19738 T27228 T27229 arg1Of *,","
R19739 T27230 T27229 arg2Of p,","
R19740 T27230 T27231 arg1Of p,<
R19741 T27232 T27227 arg2Of 0.05,(
R19742 T27232 T27228 arg1Of 0.05,*
R19743 T27233 T27227 arg3Of ),(
R19744 T27234 T27220 arg2Of or,when
R19745 T27234 T27223 arg2Of or,were
R19746 T27235 T27234 arg2Of infected,or
R19747 T27235 T27236 arg1Of infected,with
R19748 T27237 T27236 arg2Of MTb,with
R19749 T27237 T27238 arg1Of MTb,(
R19750 T27237 T27245 arg1Of MTb,.
R19751 T27237 T27249 modOf MTb,88
R19752 T27239 T27238 arg2Of **,(
R19753 T27239 T27240 arg1Of **,","
R19754 T27241 T27240 arg2Of p,","
R19755 T27241 T27242 arg1Of p,<
R19756 T27241 T27243 arg1Of p,0.01
R19757 T27244 T27238 arg3Of ),(
R19758 T27246 T27245 arg2Of (,.
R19759 T27247 T27245 arg3Of B,.
R19760 T27248 T27249 arg1Of ) MyD,88
R19761 T27248 T27250 arg1Of ) MyD,is import
R19762 T27250 T27249 arg2Of is import,88
R19763 T27250 T27251 arg1Of is import,ant
R19764 T27253 T27251 arg2Of MTb induc,ant
R19765 T27253 T27252 arg1Of MTb induc,for
R19766 T27253 T27254 arg1Of MTb induc,ti
R19767 T27253 T27258 arg1Of MTb induc,re
R19768 T27257 T27254 arg2Of 5 gene exp,ti
R19769 T27257 T27255 arg1Of 5 gene exp,on of
R19770 T27257 T27256 arg1Of 5 gene exp,NFAT
R19771 T27260 T27258 arg2Of in human ,re
R19772 T27260 T27259 arg1Of in human ,ssion

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T27052 184-189 Protein denotes NFAT5
T27051 144-149 Protein denotes MyD88
T27050 0-5 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T27519 184-189 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27518 0-5 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T27511 144-149 http://www.uniprot.org/uniprot/Q99836 denotes MyD88

GO-BP

Id Subject Object Predicate Lexical cue
T27078 190-205 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

GO-CC

Id Subject Object Predicate Lexical cue
T27082 59-64 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T26963 0-225 Sentence denotes NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys (*, p<0.05) or infected with MTb (**, p<0.01). (B) MyD88 is important for MTb induction of NFAT5 gene expression in human monocytes.
T249 0-225 Sentence denotes NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys (*, p<0.05) or infected with MTb (**, p<0.01). (B) MyD88 is important for MTb induction of NFAT5 gene expression in human monocytes.

simple1

Id Subject Object Predicate Lexical cue
T27103 184-189 Protein denotes NFAT5
T27102 144-149 Protein denotes MyD88
T27101 0-5 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T28227 195-205 Gene_expression denotes expression
T28226 171-180 Positive_regulation denotes induction
T28225 40-49 Positive_regulation denotes increased
T28224 11-21 Transcription denotes expression
T28196 184-189 Protein denotes NFAT5
T28195 144-149 Protein denotes MyD88
T28194 0-5 Protein denotes NFAT5
R20579 T28194 T28224 themeOf NFAT5,expression
R20580 T28196 T28227 themeOf NFAT5,expression
R20600 T28224 T28225 themeOf expression,increased
R20601 T28227 T28226 themeOf expression,induction

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T27670 171-180 Positive_regulation denotes induction
T27669 195-205 Gene_expression denotes expression
T27668 11-21 Transcription denotes expression
T27667 40-49 Positive_regulation denotes increased
T27640 184-189 Protein denotes NFAT5
T27639 144-149 Protein denotes MyD88
T27638 0-5 Protein denotes NFAT5
R20091 T27638 T27668 themeOf NFAT5,expression
R20092 T27640 T27669 themeOf NFAT5,expression
R20112 T27668 T27667 themeOf expression,increased
R20113 T27669 T27670 themeOf expression,induction

DLUT931

Id Subject Object Predicate Lexical cue
T27542 184-189 Protein denotes NFAT5
T27541 144-149 Protein denotes MyD88
T27540 0-5 Protein denotes NFAT5
T27573 171-180 Positive_regulation denotes induction
T27572 195-205 Gene_expression denotes expression
T27571 40-49 Positive_regulation denotes increased
T27570 11-21 Transcription denotes expression
R20040 T27540 T27570 themeOf NFAT5,expression
R20041 T27542 T27572 themeOf NFAT5,expression
R20064 T27570 T27571 themeOf expression,increased
R20065 T27572 T27573 themeOf expression,induction

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T28330 181-205 Gene_expression denotes of NFAT5 gene expression
T28324 0-21 Gene_expression denotes NFAT5 mRNA expression
T28322 0-92 Positive_regulation denotes NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys
T28311 97-98 Entity denotes p
T28307 209-224 Entity denotes human monocytes
T28291 0-5 Protein denotes NFAT5
T28284 131-132 Entity denotes p
T28277 55-64 Entity denotes the cells
T28271 122-125 Protein denotes MTb
T28261 167-170 Protein denotes MTb
T28260 0-10 Protein denotes NFAT5 mRNA
T28254 184-189 Protein denotes NFAT5
T28245 144-149 Protein denotes MyD88
R20610 T28254 T28330 themeOf NFAT5,of NFAT5 gene expression
R20612 T28260 T28324 themeOf NFAT5 mRNA,NFAT5 mRNA expression
R20622 T28324 T28322 themeOf NFAT5 mRNA expression,NFAT5 mRNA expression was significantly increased when the cells were incubated with Pam3Cys

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T27917 224-225 . denotes .
T27916 215-224 NNS denotes monocytes
T27915 209-214 JJ denotes human
T27914 206-208 IN denotes in
T27913 195-205 NN denotes expression
T27912 190-194 NN denotes gene
T27911 184-189 CD denotes NFAT5
T27910 181-183 IN denotes of
T27909 171-180 NN denotes induction
T27908 167-170 NNP denotes MTb
T27907 163-166 IN denotes for
T27906 153-162 JJ denotes important
T27905 150-152 VBZ denotes is
T27904 144-149 NNP denotes MyD88
T27903 142-143 -RRB- denotes )
T27902 141-142 NNP denotes B
T27901 140-141 -LRB- denotes (
T27900 138-139 . denotes .
T27899 137-138 -RRB- denotes )
T27898 133-137 CD denotes 0.01
T27897 132-133 NN denotes <
T27896 131-132 JJ denotes p
T27895 129-130 , denotes ,
T27894 127-129 SYM denotes **
T27893 126-127 -LRB- denotes (
T27892 122-125 NNP denotes MTb
T27891 117-121 IN denotes with
T27890 108-116 VBN denotes infected
T27889 105-107 CC denotes or
T27888 103-104 -RRB- denotes )
T27887 99-103 CD denotes 0.05
T27886 98-99 RB denotes <
T27885 97-98 VB denotes p
T27884 95-96 , denotes ,
T27883 94-95 SYM denotes *
T27882 93-94 -LRB- denotes (
T27881 85-92 NNS denotes Pam3Cys
T27880 80-84 IN denotes with
T27879 70-79 VBN denotes incubated
T27878 65-69 VBD denotes were
T27877 59-64 NNS denotes cells
T27876 55-58 DT denotes the
T27875 50-54 WRB denotes when
T27874 40-49 VBN denotes increased
T27873 26-39 RB denotes significantly
T27872 22-25 VBD denotes was
T27871 11-21 NN denotes expression
T27870 6-10 NNP denotes mRNA
T27869 0-5 CD denotes NFAT5
R20262 T27875 T27879 advmod when,incubated
R20263 T27876 T27877 det the,cells
R20264 T27877 T27879 nsubjpass cells,incubated
R20265 T27878 T27879 auxpass were,incubated
R20266 T27879 T27874 advcl incubated,increased
R20267 T27880 T27879 prep with,incubated
R20268 T27881 T27880 pobj Pam3Cys,with
R20269 T27882 T27881 punct (,Pam3Cys
R20270 T27883 T27881 appos *,Pam3Cys
R20271 T27884 T27885 punct ",",p
R20272 T27885 T27881 appos p,Pam3Cys
R20273 T27886 T27887 compound <,0.05
R20274 T27887 T27885 dobj 0.05,p
R20275 T27888 T27885 punct ),p
R20276 T27889 T27885 cc or,p
R20277 T27890 T27885 conj infected,p
R20278 T27891 T27890 prep with,infected
R20279 T27892 T27891 pobj MTb,with
R20280 T27893 T27892 punct (,MTb
R20281 T27894 T27890 punct **,infected
R20282 T27895 T27898 punct ",",0.01
R20283 T27896 T27898 compound p,0.01
R20284 T27897 T27898 compound <,0.01
R20285 T27898 T27890 npadvmod 0.01,infected
R20286 T27899 T27890 punct ),infected
R20287 T27900 T27885 punct .,p
R20288 T27901 T27904 punct (,MyD88
R20289 T27902 T27904 nmod B,MyD88
R20290 T27903 T27904 punct ),MyD88
R20291 T27904 T27905 nsubj MyD88,is
R20292 T27905 T27905 ROOT is,is
R20293 T27906 T27905 acomp important,is
R20294 T27907 T27905 prep for,is
R20295 T27908 T27909 compound MTb,induction
R20296 T27909 T27907 pobj induction,for
R20297 T27910 T27909 prep of,induction
R20298 T27911 T27913 nummod NFAT5,expression
R20299 T27912 T27913 compound gene,expression
R20300 T27913 T27910 pobj expression,of
R20301 T27914 T27913 prep in,expression
R20302 T27915 T27916 amod human,monocytes
R20303 T27916 T27914 pobj monocytes,in
R20304 T27917 T27905 punct .,is
R20256 T27869 T27871 nummod NFAT5,expression
R20257 T27870 T27871 compound mRNA,expression
R20258 T27871 T27874 nsubjpass expression,increased
R20259 T27872 T27874 auxpass was,increased
R20260 T27873 T27874 advmod significantly,increased
R20261 T27874 T27874 ROOT increased,increased

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T27699 171-180 Positive_regulation denotes induction
T27698 195-205 Gene_expression denotes expression
T27697 184-194 Protein denotes NFAT5 gene
T27696 144-149 Protein denotes MyD88
T27695 40-49 Positive_regulation denotes increased
T27694 11-21 Gene_expression denotes expression
T27693 0-10 Protein denotes NFAT5 mRNA
R20122 T27693 T27694 themeOf NFAT5 mRNA,expression
R20123 T27694 T27695 themeOf expression,increased
R20124 T27697 T27698 themeOf NFAT5 gene,expression
R20125 T27698 T27699 themeOf expression,induction

testone

Id Subject Object Predicate Lexical cue
T26872 195-205 Gene_expression denotes expression
T26871 171-180 Positive_regulation denotes induction
T26870 6-21 Transcription denotes mRNA expression
T26844 184-189 Protein denotes NFAT5
T26843 144-149 Protein denotes MyD88
T26842 0-5 Protein denotes NFAT5
R19572 T26872 T26871 themeOf expression,induction
R19555 T26842 T26870 themeOf NFAT5,mRNA expression
R19556 T26843 T26871 causeOf MyD88,induction
R19557 T26844 T26872 themeOf NFAT5,expression

test3

Id Subject Object Predicate Lexical cue
T26928 195-205 Gene_expression denotes expression
T26927 184-189 Protein denotes NFAT5
T26926 171-180 Positive_regulation denotes induction
T26925 144-149 Protein denotes MyD88
T26924 40-49 Positive_regulation denotes increased
T26923 6-21 Transcription denotes mRNA expression
T26922 0-5 Protein denotes NFAT5
T26889 184-189 Protein denotes NFAT5
T26888 144-149 Protein denotes MyD88
T26887 0-5 Protein denotes NFAT5
R19580 T26922 T26923 themeOf NFAT5,mRNA expression
R19581 T26923 T26924 themeOf mRNA expression,increased
R19582 T26925 T26926 causeOf MyD88,induction
R19583 T26927 T26928 themeOf NFAT5,expression
R19584 T26928 T26926 themeOf expression,induction