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PMC:3320587 / 3761-4076 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-10588727-98010775 97-99 10588727 denotes 21
22496647-9430229-98010776 102-104 9430229 denotes 23
22496647-21852682-98010777 120-122 21852682 denotes 10
22496647-14751757-98010778 126-128 14751757 denotes 24

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1400 310-315 NN denotes NF-κB
T1399 306-309 DT denotes the
T1398 296-305 VB denotes including
T1397 294-295 -COMMA- denotes ,
T1396 286-294 NN denotes families
T1395 279-285 NN denotes factor
T1394 265-278 NN denotes transcription
T1393 256-264 JJ denotes specific
T1392 253-255 IN denotes of
T1391 242-252 NN denotes activation
T1390 235-241 VB denotes induce
T1389 224-234 RB denotes ultimately
T1388 222-223 -COMMA- denotes ,
T1387 218-222 NN denotes turn
T1386 215-217 IN denotes in
T1385 213-214 -COMMA- denotes ,
T1384 209-213 WDT denotes that
T1383 201-208 NN denotes kinases
T1382 199-200 -RRB- denotes )
T1381 196-199 NN denotes MAP
T1380 195-196 -LRB- denotes (
T1379 187-194 NN denotes protein
T1378 169-186 JJ denotes mitogen-activated
T1377 165-168 CC denotes and
T1376 163-164 -RRB- denotes )
T1375 160-163 NN denotes IKK
T1374 159-160 -LRB- denotes (
T1373 152-158 NN denotes kinase
T1372 148-151 NN denotes IκB
T1371 138-147 VB denotes activates
T1370 132-137 NN denotes TRAF6
T1369 129-130 -RRB- denotes )
T1368 128-129 -RRB- denotes ]
T1367 126-128 CD denotes 24
T1366 125-126 -LRB- denotes [
T1365 123-124 -COMMA- denotes ,
T1364 122-123 -RRB- denotes ]
T1363 120-122 CD denotes 10
T1362 119-120 -LRB- denotes [
T1361 116-118 IN denotes in
T1360 107-115 VB denotes reviewed
T1359 105-106 -COMMA- denotes ,
T1358 104-105 -RRB- denotes ]
T1357 102-104 CD denotes 23
T1356 101-102 -LRB- denotes [
T1355 100-101 NN denotes –
T1354 99-100 -RRB- denotes ]
T1353 97-99 CD denotes 21
T1352 96-97 -LRB- denotes [
T1351 95-96 -LRB- denotes (
T1350 89-94 NN denotes TRAF6
T1349 82-88 NN denotes ligase
T1348 72-81 NN denotes ubiquitin
T1347 68-71 DT denotes the
T1346 64-67 CC denotes and
T1345 62-63 -COMMA- denotes ,
T1344 57-62 NN denotes IRAK4
T1343 53-56 CC denotes and
T1342 47-52 NN denotes IRAK1
T1341 37-46 VB denotes including
T1340 35-36 -COMMA- denotes ,
T1339 28-35 NN denotes kinases
T1338 20-27 JJ denotes several
T1337 17-19 IN denotes of
T1336 5-16 NN denotes recruitment
R902 T1336 T1337 arg1Of recruitment,of
R903 T1339 T1337 arg2Of kinases,of
R904 T1339 T1338 arg1Of kinases,several
R905 T1339 T1340 arg1Of kinases,","
R906 T1339 T1341 arg1Of kinases,including
R907 T1342 T1343 arg1Of IRAK1,and
R908 T1343 T1346 arg1Of and,and
R909 T1344 T1343 arg2Of IRAK4,and
R910 T1346 T1341 arg2Of and,including
R911 T1346 T1345 arg1Of and,","
R912 T1350 T1346 arg2Of TRAF6,and
R913 T1350 T1347 arg1Of TRAF6,the
R914 T1350 T1348 arg1Of TRAF6,ubiquitin
R915 T1350 T1349 arg1Of TRAF6,ligase
R916 T1350 T1351 arg1Of TRAF6,(
R917 T1353 T1352 arg2Of 21,[
R918 T1354 T1352 arg3Of ],[
R919 T1355 T1351 arg2Of –,(
R920 T1355 T1352 arg1Of –,[
R921 T1355 T1356 arg1Of –,[
R922 T1355 T1359 arg1Of –,","
R923 T1355 T1360 arg2Of –,reviewed
R924 T1355 T1365 arg1Of –,","
R925 T1355 T1366 arg1Of –,[
R926 T1357 T1356 arg2Of 23,[
R927 T1358 T1356 arg3Of ],[
R928 T1360 T1361 arg1Of reviewed,in
R929 T1363 T1361 arg2Of 10,in
R930 T1363 T1362 arg2Of 10,[
R931 T1364 T1362 arg3Of ],[
R932 T1367 T1366 arg2Of 24,[
R933 T1368 T1366 arg3Of ],[
R934 T1369 T1351 arg3Of ),(
R935 T1370 T1371 arg1Of TRAF6,activates
R939 T1373 T1372 arg1Of kinase,IκB
R940 T1373 T1374 arg1Of kinase,(
R941 T1373 T1377 arg1Of kinase,and
R942 T1375 T1374 arg2Of IKK,(
R943 T1376 T1374 arg3Of ),(
R944 T1377 T1371 arg2Of and,activates
R945 T1381 T1380 arg2Of MAP,(
R946 T1382 T1380 arg3Of ),(
R947 T1383 T1377 arg2Of kinases,and
R948 T1383 T1378 arg1Of kinases,mitogen-activated
R949 T1383 T1379 arg1Of kinases,protein
R950 T1383 T1380 arg1Of kinases,(
R951 T1383 T1384 arg1Of kinases,that
R952 T1383 T1390 arg1Of kinases,induce
R953 T1387 T1386 arg2Of turn,in
R954 T1390 T1385 arg1Of induce,","
R955 T1390 T1386 arg1Of induce,in
R956 T1390 T1388 arg1Of induce,","
R957 T1390 T1389 arg1Of induce,ultimately
R958 T1391 T1390 arg2Of activation,induce
R959 T1391 T1392 arg1Of activation,of
R960 T1396 T1392 arg2Of families,of
R961 T1396 T1393 arg1Of families,specific
R962 T1396 T1394 arg1Of families,transcription
R963 T1396 T1395 arg1Of families,factor
R964 T1396 T1397 arg1Of families,","
R965 T1396 T1398 arg1Of families,including

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T987 132-137 Protein denotes TRAF6
T986 89-94 Protein denotes TRAF6
T985 57-62 Protein denotes IRAK4
T984 47-52 Protein denotes IRAK1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1781 148-158 http://www.uniprot.org/uniprot/Q60680-2 denotes IκB kinase
T1780 148-158 http://www.uniprot.org/uniprot/O15111 denotes IκB kinase
T1779 132-137 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6
T1778 89-94 http://www.uniprot.org/uniprot/Q9Y4K3 denotes TRAF6

GO-BP

Id Subject Object Predicate Lexical cue
T1008 265-278 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1023 242-278 http://purl.obolibrary.org/obo/GO_0045893 denotes activation of specific transcription
T1022 160-163 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

GO-MF

Id Subject Object Predicate Lexical cue
T1039 160-163 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK
T1038 72-81 http://purl.obolibrary.org/obo/GO_0031386 denotes ubiquitin

simple1

Id Subject Object Predicate Lexical cue
T1081 132-137 Protein denotes TRAF6
T1080 89-94 Protein denotes TRAF6
T1079 57-62 Protein denotes IRAK4
T1078 47-52 Protein denotes IRAK1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2686 5-16 Binding denotes recruitment
T2675 132-137 Protein denotes TRAF6
T2674 89-94 Protein denotes TRAF6
T2673 57-62 Protein denotes IRAK4
T2672 47-52 Protein denotes IRAK1
R2057 T2672 T2686 themeOf IRAK1,recruitment
R2064 T2673 T2686 themeOf IRAK4,recruitment
R2075 T2674 T2686 themeOf TRAF6,recruitment

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1865 5-16 Binding denotes recruitment
T1853 89-94 Protein denotes TRAF6
T1854 132-137 Protein denotes TRAF6
T1852 57-62 Protein denotes IRAK4
T1851 47-52 Protein denotes IRAK1
R1380 T1851 T1865 themeOf IRAK1,recruitment
R1381 T1852 T1865 themeOf IRAK4,recruitment
R1382 T1853 T1865 themeOf TRAF6,recruitment

DLUT931

Id Subject Object Predicate Lexical cue
T1816 5-16 Binding denotes recruitment
T1803 132-137 Protein denotes TRAF6
T1802 89-94 Protein denotes TRAF6
T1801 57-62 Protein denotes IRAK4
T1800 47-52 Protein denotes IRAK1
R1357 T1800 T1816 themeOf IRAK1,recruitment
R1358 T1801 T1816 themeOf IRAK4,recruitment
R1359 T1802 T1816 themeOf TRAF6,recruitment

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2787 169-200 Positive_regulation denotes mitogen-activated protein (MAP)
T2782 132-208 Positive_regulation denotes TRAF6 activates IκB kinase (IKK) and mitogen-activated protein (MAP) kinases
T2776 242-285 Positive_regulation denotes activation of specific transcription factor
T2764 68-94 Protein denotes the ubiquitin ligase TRAF6
T2753 169-200 Protein denotes mitogen-activated protein (MAP)
T2747 310-315 Protein denotes NF-κB
T2739 132-137 Protein denotes TRAF6
T2738 72-81 Protein denotes ubiquitin
T2730 20-63 Protein denotes several kinases, including IRAK1 and IRAK4,
T2729 253-285 Protein denotes of specific transcription factor
T2728 57-62 Protein denotes IRAK4
T2715 148-164 Protein denotes IκB kinase (IKK)
T2710 47-52 Protein denotes IRAK1
T2708 68-94 Protein denotes the ubiquitin ligase TRAF6
T2707 169-186 Entity denotes mitogen-activated
T2703 148-208 Protein denotes IκB kinase (IKK) and mitogen-activated protein (MAP) kinases
T2702 196-199 Protein denotes MAP
R2120 T2703 T2782 themeOf IκB kinase (IKK) and mitogen-activated protein (MAP) kinases,TRAF6 activates IκB kinase (IKK) and mitogen-activated protein (MAP) kinases
R2134 T2707 T2787 causeOf mitogen-activated,mitogen-activated protein (MAP)
R2147 T2729 T2776 themeOf of specific transcription factor,activation of specific transcription factor
R2149 T2739 T2782 causeOf TRAF6,TRAF6 activates IκB kinase (IKK) and mitogen-activated protein (MAP) kinases
R2151 T2753 T2787 themeOf mitogen-activated protein (MAP),mitogen-activated protein (MAP)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2237 310-315 NN denotes NF-κB
T2236 306-309 DT denotes the
T2235 296-305 VBG denotes including
T2234 294-295 , denotes ,
T2233 286-294 NNS denotes families
T2232 279-285 NN denotes factor
T2231 265-278 NN denotes transcription
T2230 256-264 JJ denotes specific
T2229 253-255 IN denotes of
T2228 242-252 NN denotes activation
T2227 235-241 VB denotes induce
T2226 224-234 RB denotes ultimately
T2225 222-223 , denotes ,
T2224 218-222 NN denotes turn
T2223 215-217 IN denotes in
T2222 213-214 , denotes ,
T2221 209-213 IN denotes that
T2220 201-208 VBZ denotes kinases
T2219 199-200 -RRB- denotes )
T2218 196-199 NNP denotes MAP
T2217 195-196 -LRB- denotes (
T2216 187-194 NN denotes protein
T2215 169-186 JJ denotes mitogen-activated
T2214 165-168 CC denotes and
T2213 163-164 -RRB- denotes )
T2212 160-163 NNP denotes IKK
T2211 159-160 -LRB- denotes (
T2210 152-158 NN denotes kinase
T2209 148-151 NNP denotes IκB
T2208 138-147 NNS denotes activates
T2207 132-137 CD denotes TRAF6
T2206 130-131 . denotes .
T2205 129-130 -RRB- denotes )
T2204 128-129 NNP denotes ]
T2203 126-128 CD denotes 24
T2202 125-126 NNP denotes [
T2201 123-124 , denotes ,
T2200 122-123 NNP denotes ]
T2199 120-122 CD denotes 10
T2198 119-120 NNP denotes [
T2197 116-118 IN denotes in
T2196 107-115 VBN denotes reviewed
T2195 105-106 , denotes ,
T2194 104-105 NNP denotes ]
T2193 102-104 CD denotes 23
T2192 101-102 NNP denotes [
T2191 99-100 NNP denotes ]
T2190 97-99 CD denotes 21
T2189 96-97 NNP denotes [
T2188 95-96 -LRB- denotes (
T2187 89-94 NNP denotes TRAF6
T2186 82-88 NN denotes ligase
T2185 72-81 NN denotes ubiquitin
T2184 68-71 DT denotes the
T2183 64-67 CC denotes and
T2182 62-63 , denotes ,
T2181 57-62 NNP denotes IRAK4
T2180 53-56 CC denotes and
T2179 47-52 NNP denotes IRAK1
T2178 37-46 VBG denotes including
T2177 35-36 , denotes ,
T2176 28-35 NNS denotes kinases
T2175 20-27 JJ denotes several
T2174 17-19 IN denotes of
T2173 5-16 NN denotes recruitment
R1613 T2189 T2187 appos [,TRAF6
R1621 T2190 T2191 nummod 21,]
R1626 T2191 T2187 appos ],TRAF6
R1629 T2192 T2187 appos [,TRAF6
R1633 T2193 T2194 nummod 23,]
R1637 T2194 T2187 appos ],TRAF6
R1641 T2195 T2196 punct ",",reviewed
R1644 T2196 T2196 ROOT reviewed,reviewed
R1649 T2197 T2196 prep in,reviewed
R1653 T2198 T2197 pobj [,in
R1657 T2199 T2200 nummod 10,]
R1661 T2200 T2196 npadvmod ],reviewed
R1663 T2201 T2200 punct ",",]
R1665 T2202 T2200 conj [,]
R1670 T2203 T2204 nummod 24,]
R1674 T2174 T2173 prep of,recruitment
R1675 T2204 T2204 ROOT ],]
R1676 T2175 T2176 amod several,kinases
R1677 T2176 T2174 pobj kinases,of
R1678 T2205 T2202 punct ),[
R1679 T2177 T2176 punct ",",kinases
R1680 T2178 T2176 prep including,kinases
R1681 T2206 T2196 punct .,reviewed
R1682 T2179 T2178 pobj IRAK1,including
R1683 T2180 T2179 cc and,IRAK1
R1684 T2181 T2179 conj IRAK4,IRAK1
R1685 T2207 T2208 nsubj TRAF6,activates
R1686 T2182 T2181 punct ",",IRAK4
R1687 T2183 T2181 cc and,IRAK4
R1688 T2184 T2196 det the,reviewed
R1689 T2208 T2208 ROOT activates,activates
R1690 T2185 T2196 npadvmod ubiquitin,reviewed
R1691 T2186 T2187 compound ligase,TRAF6
R1692 T2187 T2185 appos TRAF6,ubiquitin
R1693 T2188 T2189 punct (,[
R1694 T2209 T2210 compound IκB,kinase
R1695 T2210 T2208 dobj kinase,activates
R1696 T2211 T2212 punct (,IKK
R1697 T2212 T2210 appos IKK,kinase
R1698 T2213 T2212 punct ),IKK
R1699 T2214 T2210 cc and,kinase
R1702 T2215 T2216 amod mitogen-activated,protein
R1705 T2216 T2210 conj protein,kinase
R1709 T2217 T2218 punct (,MAP
R1713 T2218 T2216 appos MAP,protein
R1717 T2219 T2216 punct ),protein
R1723 T2220 T2208 conj kinases,activates
R1726 T2221 T2227 mark that,induce
R1730 T2222 T2227 punct ",",induce
R1734 T2223 T2227 prep in,induce
R1738 T2224 T2223 pobj turn,in
R1743 T2225 T2227 punct ",",induce
R1747 T2226 T2227 advmod ultimately,induce
R1749 T2227 T2220 ccomp induce,kinases
R1751 T2228 T2227 dobj activation,induce
R1754 T2229 T2228 prep of,activation
R1758 T2230 T2233 amod specific,families
R1762 T2231 T2232 compound transcription,factor
R1765 T2232 T2233 compound factor,families
R1771 T2233 T2229 pobj families,of
R1775 T2234 T2233 punct ",",families
R1779 T2235 T2233 prep including,families
R1783 T2236 T2237 det the,NF-κB
R1786 T2237 T2235 pobj NF-κB,including

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1899 138-147 Positive_regulation denotes activates
T1898 138-147 Positive_regulation denotes activates
T1897 138-147 Positive_regulation denotes activates
T1894 310-315 Protein denotes NF-κB
T1893 169-208 Protein denotes mitogen-activated protein (MAP) kinases
T1892 160-163 Protein denotes IKK
T1891 148-158 Protein denotes IκB kinase
T1890 132-137 Protein denotes TRAF6
T1889 5-16 Binding denotes recruitment
T1886 72-88 Protein denotes ubiquitin ligase
T1885 57-62 Protein denotes IRAK4
T1884 47-52 Protein denotes IRAK1
R1395 T1886 T1889 themeOf ubiquitin ligase,recruitment
R1396 T1891 T1897 themeOf IκB kinase,activates
R1397 T1892 T1898 themeOf IKK,activates
R1398 T1893 T1899 themeOf mitogen-activated protein (MAP) kinases,activates
R1400 T1897 T1890 Cause activates,TRAF6
R1401 T1898 T1890 Cause activates,TRAF6
R1402 T1899 T1890 Cause activates,TRAF6

testone

Id Subject Object Predicate Lexical cue
T875 5-16 Binding denotes recruitment
T862 132-137 Protein denotes TRAF6
T861 89-94 Protein denotes TRAF6
T860 57-62 Protein denotes IRAK4
T859 47-52 Protein denotes IRAK1
R610 T859 T875 themeOf IRAK1,recruitment
R611 T860 T875 themeOf IRAK4,recruitment
R612 T861 T875 themeOf TRAF6,recruitment

test3

Id Subject Object Predicate Lexical cue
T910 132-137 Protein denotes TRAF6
T909 89-94 Protein denotes TRAF6
T908 57-62 Protein denotes IRAK4
T907 47-52 Protein denotes IRAK1
T906 5-16 Binding denotes recruitment
T888 132-137 Protein denotes TRAF6
T887 89-94 Protein denotes TRAF6
T886 57-62 Protein denotes IRAK4
T885 47-52 Protein denotes IRAK1
R620 T907 T906 themeOf IRAK1,recruitment
R621 T908 T906 themeOf IRAK4,recruitment
R622 T909 T906 themeOf TRAF6,recruitment