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PMC:3320587 / 31245-31442 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11022 195-196 -RRB- denotes )
T11021 193-195 NN denotes 3C
T11020 186-192 NN denotes Figure
T11019 183-185 IN denotes of
T11018 177-182 CD denotes 12–15
T11017 171-176 NN denotes lanes
T11016 167-170 CC denotes and
T11015 162-166 CD denotes 7–10
T11014 156-161 NN denotes lanes
T11013 151-155 IN denotes with
T11012 147-150 CD denotes 2–5
T11011 141-146 NN denotes lanes
T11010 133-140 NN denotes compare
T11009 132-133 -LRB- denotes (
T11008 127-131 NN denotes site
T11007 122-126 DT denotes each
T11006 119-121 IN denotes at
T11005 111-118 NN denotes binding
T11004 103-110 NN denotes p50/p65
T11003 93-102 VB denotes inhibited
T11002 91-92 -COMMA- denotes ,
T11001 82-91 VB denotes predicted
T11000 79-81 IN denotes as
T10999 77-78 -COMMA- denotes ,
T10998 72-77 NN denotes motif
T10997 64-71 NN denotes binding
T10996 58-63 NN denotes NF-κB
T10995 51-57 CC denotes either
T10994 48-50 IN denotes in
T10993 45-47 NN denotes TA
T10992 42-44 TO denotes to
T10991 29-41 NN denotes dinucleotide
T10990 26-28 NN denotes GG
T10989 22-25 DT denotes the
T10988 13-21 VB denotes changing
T10987 11-12 -COMMA- denotes ,
T10986 3-11 NN denotes contrast
T10985 0-2 IN denotes By
R8503 T10986 T10985 arg2Of contrast,By
R8504 T10991 T10988 arg2Of dinucleotide,changing
R8505 T10991 T10989 arg1Of dinucleotide,the
R8506 T10991 T10990 arg1Of dinucleotide,GG
R8507 T10993 T10988 arg1Of TA,changing
R8508 T10993 T10992 arg1Of TA,to
R8509 T10993 T10994 arg1Of TA,in
R8510 T10993 T11001 arg2Of TA,predicted
R8511 T10993 T11003 arg1Of TA,inhibited
R8512 T10998 T10994 arg2Of motif,in
R8513 T10998 T10995 arg1Of motif,either
R8514 T10998 T10996 arg1Of motif,NF-κB
R8515 T10998 T10997 arg1Of motif,binding
R8516 T11001 T11000 arg2Of predicted,as
R8517 T11003 T10985 arg1Of inhibited,By
R8518 T11003 T10987 arg1Of inhibited,","
R8519 T11003 T10988 modOf inhibited,changing
R8520 T11003 T10999 arg1Of inhibited,","
R8521 T11003 T11000 arg1Of inhibited,as
R8522 T11003 T11002 arg1Of inhibited,","
R8523 T11005 T11003 arg2Of binding,inhibited
R8524 T11005 T11004 arg1Of binding,p50/p65
R8525 T11005 T11006 arg1Of binding,at
R8526 T11005 T11009 arg1Of binding,(
R8527 T11008 T11006 arg2Of site,at
R8528 T11008 T11007 arg1Of site,each
R8529 T11011 T11009 arg2Of lanes,(
R8530 T11011 T11010 arg1Of lanes,compare
R8531 T11011 T11012 arg1Of lanes,2–5
R8532 T11011 T11013 arg1Of lanes,with
R8533 T11014 T11015 arg1Of lanes,7–10
R8534 T11014 T11016 arg1Of lanes,and
R8535 T11017 T11016 arg2Of lanes,and
R8536 T11018 T11013 arg2Of 12–15,with
R8537 T11018 T11014 arg1Of 12–15,lanes
R8538 T11018 T11017 arg1Of 12–15,lanes
R8539 T11018 T11019 arg1Of 12–15,of
R8540 T11021 T11019 arg2Of 3C,of
R8541 T11021 T11020 arg1Of 3C,Figure
R8542 T11022 T11009 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T10539 107-110 Protein denotes p65
T10538 103-106 Protein denotes p50

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T11136 107-110 http://www.uniprot.org/uniprot/P21579 denotes p65
T11130 107-110 http://www.uniprot.org/uniprot/Q04206 denotes p65
T11124 103-106 http://www.uniprot.org/uniprot/P19838 denotes p50

GO-MF

Id Subject Object Predicate Lexical cue
T10572 58-71 http://purl.obolibrary.org/obo/GO_0051059 denotes NF-κB binding
T10563 111-118 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T10562 64-71 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T10455 0-197 Sentence denotes By contrast, changing the GG dinucleotide to TA in either NF-κB binding motif, as predicted, inhibited p50/p65 binding at each site (compare lanes 2–5 with lanes 7–10 and lanes 12–15 of Figure 3C).
T185 0-197 Sentence denotes By contrast, changing the GG dinucleotide to TA in either NF-κB binding motif, as predicted, inhibited p50/p65 binding at each site (compare lanes 2–5 with lanes 7–10 and lanes 12–15 of Figure 3C).

simple1

Id Subject Object Predicate Lexical cue
T10629 107-110 Protein denotes p65
T10628 103-106 Protein denotes p50

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T12033 93-102 Negative_regulation denotes inhibited
T12032 111-118 Binding denotes binding
T12011 107-110 Protein denotes p65
T12010 103-106 Protein denotes p50
R9318 T12010 T12032 themeOf p50,binding
R9319 T12011 T12032 themeOf p65,binding
R9333 T12032 T12033 themeOf binding,inhibited
R9334 T12032 T12033 themeOf binding,inhibited

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T11280 93-102 Negative_regulation denotes inhibited
T11279 111-118 Binding denotes binding
T11258 107-110 Protein denotes p65
T11257 103-106 Protein denotes p50
R8693 T11257 T11279 themeOf p50,binding
R8694 T11258 T11279 themeOf p65,binding
R8708 T11279 T11280 themeOf binding,inhibited
R8709 T11279 T11280 themeOf binding,inhibited

DLUT931

Id Subject Object Predicate Lexical cue
T11189 93-102 Negative_regulation denotes inhibited
T11188 111-118 Binding denotes binding
T11163 107-110 Protein denotes p65
T11162 103-106 Protein denotes p50
R8638 T11162 T11188 themeOf p50,binding
R8639 T11162 T11188 themeOf p50,binding
R8640 T11163 T11188 themeOf p65,binding
R8659 T11188 T11189 themeOf binding,inhibited
R8660 T11188 T11189 themeOf binding,inhibited

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T12116 103-118 Binding denotes p50/p65 binding
T12111 107-110 Protein denotes p65
T12106 45-47 Protein denotes TA
T12094 103-110 Protein denotes p50/p65
T12078 22-41 Entity denotes the GG dinucleotide
T12066 103-110 Protein denotes p50/p65
T12056 122-131 Entity denotes each site
R9353 T12094 T12116 themeOf p50/p65,p50/p65 binding

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11903 196-197 . denotes .
T11902 195-196 -RRB- denotes )
T11901 193-195 NN denotes 3C
T11900 186-192 NN denotes Figure
T11899 183-185 IN denotes of
T11898 180-182 CD denotes 15
T11897 177-179 CD denotes 12
T11896 171-176 NNS denotes lanes
T11895 167-170 CC denotes and
T11894 164-166 CD denotes 10
T11893 162-163 CD denotes 7
T11892 156-161 NNS denotes lanes
T11891 151-155 IN denotes with
T11890 149-150 CD denotes 5
T11889 147-148 CD denotes 2
T11888 141-146 NNS denotes lanes
T11887 133-140 VB denotes compare
T11886 132-133 -LRB- denotes (
T11885 127-131 NN denotes site
T11884 122-126 DT denotes each
T11883 119-121 IN denotes at
T11882 111-118 JJ denotes binding
T11881 103-110 CD denotes p50/p65
T11880 93-102 VBN denotes inhibited
T11879 91-92 , denotes ,
T11878 82-91 VBN denotes predicted
T11877 79-81 IN denotes as
T11876 77-78 , denotes ,
T11875 72-77 NN denotes motif
T11874 64-71 JJ denotes binding
T11873 58-63 JJ denotes NF-κB
T11872 51-57 DT denotes either
T11871 48-50 IN denotes in
T11870 45-47 NNP denotes TA
T11869 42-44 TO denotes to
T11868 29-41 NN denotes dinucleotide
T11867 26-28 NNP denotes GG
T11866 22-25 DT denotes the
T11865 13-21 VBG denotes changing
T11864 11-12 , denotes ,
T11863 3-11 NN denotes contrast
T11862 0-2 IN denotes By
R9177 T11862 T11880 prep By,inhibited
R9178 T11863 T11862 pobj contrast,By
R9179 T11864 T11880 punct ",",inhibited
R9180 T11865 T11880 advcl changing,inhibited
R9181 T11866 T11868 det the,dinucleotide
R9182 T11867 T11868 compound GG,dinucleotide
R9183 T11868 T11865 dobj dinucleotide,changing
R9184 T11869 T11865 prep to,changing
R9185 T11870 T11869 pobj TA,to
R9186 T11871 T11865 prep in,changing
R9187 T11872 T11875 det either,motif
R9188 T11873 T11875 amod NF-κB,motif
R9189 T11874 T11875 amod binding,motif
R9190 T11875 T11871 pobj motif,in
R9191 T11876 T11880 punct ",",inhibited
R9192 T11877 T11878 mark as,predicted
R9193 T11878 T11880 advcl predicted,inhibited
R9194 T11879 T11880 punct ",",inhibited
R9195 T11880 T11880 ROOT inhibited,inhibited
R9196 T11881 T11882 nummod p50/p65,binding
R9197 T11882 T11880 dobj binding,inhibited
R9198 T11883 T11880 prep at,inhibited
R9199 T11884 T11885 det each,site
R9200 T11885 T11883 pobj site,at
R9201 T11886 T11887 punct (,compare
R9202 T11887 T11880 advcl compare,inhibited
R9203 T11888 T11887 dobj lanes,compare
R9204 T11889 T11888 nummod 2,lanes
R9205 T11890 T11887 nummod 5,compare
R9206 T11891 T11887 prep with,compare
R9207 T11892 T11891 pobj lanes,with
R9208 T11893 T11887 dobj 7,compare
R9209 T11894 T11896 nummod 10,lanes
R9210 T11895 T11894 cc and,10
R9211 T11896 T11893 appos lanes,7
R9212 T11897 T11896 appos 12,lanes
R9213 T11898 T11896 appos 15,lanes
R9214 T11899 T11898 prep of,15
R9215 T11900 T11901 compound Figure,3C
R9216 T11901 T11899 pobj 3C,of
R9217 T11902 T11896 punct ),lanes
R9218 T11903 T11887 punct .,compare

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11360 93-102 Negative_regulation denotes inhibited
T11359 93-102 Negative_regulation denotes inhibited
T11358 111-118 Binding denotes binding
T11357 111-118 Binding denotes binding
T11356 107-110 Protein denotes p65
T11355 103-106 Protein denotes p50
T11354 58-63 Protein denotes NF-κB
R8739 T11355 T11357 themeOf p50,binding
R8740 T11356 T11358 themeOf p65,binding
R8741 T11357 T11359 themeOf binding,inhibited
R8742 T11358 T11360 themeOf binding,inhibited

testone

Id Subject Object Predicate Lexical cue
T10360 111-118 Binding denotes binding
T10359 93-102 Negative_regulation denotes inhibited
T10358 62-77 Entity denotes B binding motif
T10357 58-61 Entity denotes NF-
T10335 107-110 Protein denotes p65
T10334 103-106 Protein denotes p50
R8071 T10334 T10360 themeOf p50,binding
R8072 T10335 T10360 themeOf p65,binding
R8084 T10360 T10359 themeOf binding,inhibited

test3

Id Subject Object Predicate Lexical cue
T10434 111-118 Binding denotes binding
T10433 107-110 Protein denotes p65
T10432 103-106 Protein denotes p50
T10431 93-102 Negative_regulation denotes inhibited
T10430 64-71 Binding denotes binding
T10393 107-110 Protein denotes p65
T10392 103-106 Protein denotes p50
R8100 T10432 T10434 themeOf p50,binding
R8101 T10433 T10434 themeOf p65,binding
R8102 T10434 T10431 themeOf binding,inhibited