PMC:3320587 / 29068-29325 JSONTXT

Annnotations TAB JSON ListView MergeView

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T24070","span":{"begin":252,"end":256},"obj":"NN"},{"id":"T24069","span":{"begin":244,"end":251},"obj":"NN"},{"id":"T24068","span":{"begin":238,"end":243},"obj":"NN"},{"id":"T24067","span":{"begin":226,"end":237},"obj":"VB"},{"id":"T24066","span":{"begin":222,"end":225},"obj":"DT"},{"id":"T24065","span":{"begin":219,"end":221},"obj":"TO"},{"id":"T24064","span":{"begin":211,"end":218},"obj":"VB"},{"id":"T24063","span":{"begin":203,"end":210},"obj":"NN"},{"id":"T24062","span":{"begin":197,"end":202},"obj":"NN"},{"id":"T24061","span":{"begin":190,"end":196},"obj":"VB"},{"id":"T24060","span":{"begin":186,"end":189},"obj":"RB"},{"id":"T24059","span":{"begin":181,"end":185},"obj":"VB"},{"id":"T24058","span":{"begin":177,"end":180},"obj":"CC"},{"id":"T24057","span":{"begin":173,"end":176},"obj":"NN"},{"id":"T24056","span":{"begin":167,"end":172},"obj":"JJ"},{"id":"T24055","span":{"begin":163,"end":166},"obj":"DT"},{"id":"T24054","span":{"begin":160,"end":162},"obj":"TO"},{"id":"T24053","span":{"begin":152,"end":159},"obj":"NN"},{"id":"T24052","span":{"begin":146,"end":151},"obj":"NN"},{"id":"T24051","span":{"begin":136,"end":145},"obj":"VB"},{"id":"T24050","span":{"begin":131,"end":135},"obj":"NN"},{"id":"T24049","span":{"begin":123,"end":130},"obj":"NN"},{"id":"T24048","span":{"begin":117,"end":122},"obj":"NN"},{"id":"T24047","span":{"begin":113,"end":116},"obj":"DT"},{"id":"T24046","span":{"begin":110,"end":112},"obj":"IN"},{"id":"T24045","span":{"begin":101,"end":109},"obj":"NN"},{"id":"T24044","span":{"begin":92,"end":100},"obj":"JJ"},{"id":"T24043","span":{"begin":90,"end":91},"obj":"-RRB-"},{"id":"T24042","span":{"begin":89,"end":90},"obj":"NN"},{"id":"T24041","span":{"begin":88,"end":89},"obj":"-LRB-"},{"id":"T24040","span":{"begin":78,"end":87},"obj":"NN"},{"id":"T24039","span":{"begin":69,"end":77},"obj":"JJ"},{"id":"T24038","span":{"begin":49,"end":68},"obj":"NN"},{"id":"T24037","span":{"begin":45,"end":48},"obj":"DT"},{"id":"T24036","span":{"begin":42,"end":44},"obj":"IN"},{"id":"T24035","span":{"begin":38,"end":41},"obj":"NN"},{"id":"T24034","span":{"begin":35,"end":37},"obj":"NN"},{"id":"T24033","span":{"begin":31,"end":34},"obj":"DT"},{"id":"T24032","span":{"begin":26,"end":30},"obj":"IN"},{"id":"T24031","span":{"begin":15,"end":25},"obj":"VB"},{"id":"T24030","span":{"begin":10,"end":14},"obj":"VB"},{"id":"T24029","span":{"begin":0,"end":9},"obj":"NN"}],"relations":[{"id":"R17633","pred":"arg1Of","subj":"T24029","obj":"T24030"},{"id":"R17634","pred":"arg2Of","subj":"T24029","obj":"T24031"},{"id":"R17635","pred":"arg2Of","subj":"T24031","obj":"T24030"},{"id":"R17636","pred":"arg1Of","subj":"T24031","obj":"T24032"},{"id":"R17637","pred":"arg2Of","subj":"T24035","obj":"T24032"},{"id":"R17638","pred":"arg1Of","subj":"T24035","obj":"T24033"},{"id":"R17639","pred":"arg1Of","subj":"T24035","obj":"T24034"},{"id":"R17640","pred":"arg1Of","subj":"T24035","obj":"T24036"},{"id":"R17641","pred":"arg2Of","subj":"T24040","obj":"T24036"},{"id":"R17642","pred":"arg1Of","subj":"T24040","obj":"T24037"},{"id":"R17643","pred":"arg1Of","subj":"T24040","obj":"T24038"},{"id":"R17644","pred":"arg1Of","subj":"T24040","obj":"T24039"},{"id":"R17645","pred":"arg2Of","subj":"T24042","obj":"T24041"},{"id":"R17646","pred":"arg3Of","subj":"T24043","obj":"T24041"},{"id":"R17647","pred":"arg1Of","subj":"T24045","obj":"T24041"},{"id":"R17648","pred":"arg1Of","subj":"T24045","obj":"T24044"},{"id":"R17649","pred":"arg1Of","subj":"T24045","obj":"T24046"},{"id":"R17650","pred":"arg1Of","subj":"T24045","obj":"T24051"},{"id":"R17651","pred":"arg1Of","subj":"T24045","obj":"T24059"},{"id":"R17652","pred":"arg1Of","subj":"T24045","obj":"T24061"},{"id":"R17653","pred":"arg2Of","subj":"T24050","obj":"T24046"},{"id":"R17654","pred":"arg1Of","subj":"T24050","obj":"T24047"},{"id":"R17655","pred":"arg1Of","subj":"T24050","obj":"T24048"},{"id":"R17656","pred":"arg1Of","subj":"T24050","obj":"T24049"},{"id":"R17657","pred":"arg1Of","subj":"T24051","obj":"T24058"},{"id":"R17658","pred":"arg2Of","subj":"T24053","obj":"T24051"},{"id":"R17659","pred":"arg1Of","subj":"T24053","obj":"T24052"},{"id":"R17660","pred":"arg1Of","subj":"T24053","obj":"T24054"},{"id":"R17661","pred":"arg2Of","subj":"T24057","obj":"T24054"},{"id":"R17662","pred":"arg1Of","subj":"T24057","obj":"T24055"},{"id":"R17663","pred":"arg1Of","subj":"T24057","obj":"T24056"},{"id":"R17664","pred":"modOf","subj":"T24058","obj":"T24030"},{"id":"R17665","pred":"arg2Of","subj":"T24061","obj":"T24058"},{"id":"R17666","pred":"arg2Of","subj":"T24061","obj":"T24059"},{"id":"R17667","pred":"arg1Of","subj":"T24061","obj":"T24060"},{"id":"R17668","pred":"arg2Of","subj":"T24063","obj":"T24061"},{"id":"R17669","pred":"arg1Of","subj":"T24063","obj":"T24062"},{"id":"R17670","pred":"arg1Of","subj":"T24063","obj":"T24064"},{"id":"R17671","pred":"arg1Of","subj":"T24064","obj":"T24065"},{"id":"R17672","pred":"arg2Of","subj":"T24070","obj":"T24065"},{"id":"R17673","p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were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T23830","span":{"begin":207,"end":210},"obj":"Protein"},{"id":"T23829","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T23828","span":{"begin":146,"end":151},"obj":"Protein"},{"id":"T23827","span":{"begin":62,"end":65},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T24344","span":{"begin":203,"end":206},"obj":"http://www.uniprot.org/uniprot/P19838"},{"id":"T24333","span":{"begin":62,"end":65},"obj":"http://www.uniprot.org/uniprot/P04578"},{"id":"T24320","span":{"begin":146,"end":151},"obj":"http://www.uniprot.org/uniprot/O94916"},{"id":"T24319","span":{"begin":117,"end":122},"obj":"http://www.uniprot.org/uniprot/O94916"},{"id":"T24352","span":{"begin":207,"end":210},"obj":"http://www.uniprot.org/uniprot/P21579"},{"id":"T24348","span":{"begin":207,"end":210},"obj":"http://www.uniprot.org/uniprot/Q04206"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T23866","span":{"begin":244,"end":251},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T23865","span":{"begin":211,"end":218},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T23864","span":{"begin":152,"end":159},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T23863","span":{"begin":123,"end":130},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    sentences

    {"project":"sentences","denotations":[{"id":"T23765","span":{"begin":0,"end":257},"obj":"Sentence"},{"id":"T176","span":{"begin":0,"end":257},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    simple1

    {"project":"simple1","denotations":[{"id":"T23923","span":{"begin":207,"end":210},"obj":"Protein"},{"id":"T23922","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T23921","span":{"begin":146,"end":151},"obj":"Protein"},{"id":"T23920","span":{"begin":62,"end":65},"obj":"Protein"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T25132","span":{"begin":152,"end":159},"obj":"Binding"},{"id":"T25131","span":{"begin":136,"end":145},"obj":"Negative_regulation"},{"id":"T25130","span":{"begin":211,"end":218},"obj":"Binding"},{"id":"T25129","span":{"begin":190,"end":196},"obj":"Regulation"},{"id":"T25101","span":{"begin":146,"end":151},"obj":"Protein"},{"id":"T25100","span":{"begin":207,"end":210},"obj":"Protein"},{"id":"T25099","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T25098","span":{"begin":62,"end":65},"obj":"Protein"}],"relations":[{"id":"R18417","pred":"themeOf","subj":"T25099","obj":"T25130"},{"id":"R18418","pred":"themeOf","subj":"T25100","obj":"T25129"},{"id":"R18419","pred":"themeOf","subj":"T25100","obj":"T25130"},{"id":"R18420","pred":"themeOf","subj":"T25101","obj":"T25132"},{"id":"R18429","pred":"themeOf","subj":"T25130","obj":"T25129"},{"id":"R18430","pred":"themeOf","subj":"T25130","obj":"T25129"},{"id":"R18431","pred":"themeOf","subj":"T25132","obj":"T25131"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T24416","span":{"begin":207,"end":210},"obj":"Protein"},{"id":"T24415","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T24414","span":{"begin":62,"end":65},"obj":"Protein"},{"id":"T24448","span":{"begin":152,"end":159},"obj":"Binding"},{"id":"T24447","span":{"begin":190,"end":196},"obj":"Regulation"},{"id":"T24446","span":{"begin":211,"end":218},"obj":"Binding"},{"id":"T24445","span":{"begin":136,"end":145},"obj":"Negative_regulation"},{"id":"T24417","span":{"begin":146,"end":151},"obj":"Protein"}],"relations":[{"id":"R17947","pred":"themeOf","subj":"T24415","obj":"T24446"},{"id":"R17948","pred":"themeOf","subj":"T24416","obj":"T24446"},{"id":"R17949","pred":"themeOf","subj":"T24417","obj":"T24448"},{"id":"R17958","pred":"themeOf","subj":"T24446","obj":"T24447"},{"id":"R17959","pred":"themeOf","subj":"T24446","obj":"T24447"},{"id":"R17960","pred":"themeOf","subj":"T24448","obj":"T24445"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T24398","span":{"begin":190,"end":196},"obj":"Regulation"},{"id":"T24397","span":{"begin":136,"end":145},"obj":"Negative_regulation"},{"id":"T24396","span":{"begin":211,"end":218},"obj":"Binding"},{"id":"T24395","span":{"begin":152,"end":159},"obj":"Binding"},{"id":"T24366","span":{"begin":146,"end":151},"obj":"Protein"},{"id":"T24365","span":{"begin":207,"end":210},"obj":"Protein"},{"id":"T24364","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T24363","span":{"begin":62,"end":65},"obj":"Protein"}],"relations":[{"id":"R17929","pred":"themeOf","subj":"T24364","obj":"T24396"},{"id":"R17930","pred":"themeOf","subj":"T24364","obj":"T24396"},{"id":"R17931","pred":"themeOf","subj":"T24365","obj":"T24396"},{"id":"R17932","pred":"themeOf","subj":"T24366","obj":"T24395"},{"id":"R17941","pred":"themeOf","subj":"T24395","obj":"T24397"},{"id":"R17942","pred":"themeOf","subj":"T24396","obj":"T24398"},{"id":"R17943","pred":"themeOf","subj":"T24396","obj":"T24398"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T25198","span":{"begin":146,"end":159},"obj":"Binding"},{"id":"T25195","span":{"begin":197,"end":256},"obj":"Binding"},{"id":"T25190","span":{"begin":110,"end":130},"obj":"Binding"},{"id":"T25187","span":{"begin":219,"end":256},"obj":"Entity"},{"id":"T25180","span":{"begin":197,"end":256},"obj":"Protein"},{"id":"T25177","span":{"begin":146,"end":151},"obj":"Protein"},{"id":"T25170","span":{"begin":117,"end":122},"obj":"Protein"},{"id":"T25167","span":{"begin":197,"end":202},"obj":"Protein"},{"id":"T25161","span":{"begin":131,"end":135},"obj":"Entity"}],"relations":[{"id":"R18440","pred":"themeOf","subj":"T25170","obj":"T25190"},{"id":"R18442","pred":"themeOf","subj":"T25177","obj":"T25198"},{"id":"R18443","pred":"themeOf","subj":"T25180","obj":"T25195"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    bionlp-st-ge-2016-spacy-parsed

    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were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T24527","span":{"begin":136,"end":145},"obj":"Negative_regulation"},{"id":"T24526","span":{"begin":152,"end":159},"obj":"Binding"},{"id":"T24525","span":{"begin":238,"end":256},"obj":"Protein"},{"id":"T24524","span":{"begin":207,"end":210},"obj":"Protein"},{"id":"T24523","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T24522","span":{"begin":197,"end":202},"obj":"Protein"},{"id":"T24521","span":{"begin":146,"end":151},"obj":"Protein"},{"id":"T24520","span":{"begin":117,"end":135},"obj":"Protein"}],"relations":[{"id":"R17973","pred":"themeOf","subj":"T24521","obj":"T24526"},{"id":"R17974","pred":"themeOf","subj":"T24526","obj":"T24527"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    testone

    {"project":"testone","denotations":[{"id":"T23673","span":{"begin":244,"end":256},"obj":"Entity"},{"id":"T23672","span":{"begin":211,"end":218},"obj":"Binding"},{"id":"T23671","span":{"begin":190,"end":196},"obj":"Regulation"},{"id":"T23641","span":{"begin":207,"end":210},"obj":"Protein"},{"id":"T23640","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T23639","span":{"begin":146,"end":151},"obj":"Protein"},{"id":"T23638","span":{"begin":62,"end":65},"obj":"Protein"}],"relations":[{"id":"R17525","pred":"themeOf","subj":"T23640","obj":"T23672"},{"id":"R17526","pred":"themeOf","subj":"T23641","obj":"T23672"},{"id":"R17533","pred":"themeOf","subj":"T23672","obj":"T23671"},{"id":"R17534","pred":"themeOf","subj":"T23673","obj":"T23672"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}

    test3

    {"project":"test3","denotations":[{"id":"T23731","span":{"begin":211,"end":218},"obj":"Binding"},{"id":"T23730","span":{"begin":207,"end":210},"obj":"Protein"},{"id":"T23729","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T23728","span":{"begin":190,"end":196},"obj":"Regulation"},{"id":"T23727","span":{"begin":152,"end":159},"obj":"Binding"},{"id":"T23726","span":{"begin":146,"end":151},"obj":"Protein"},{"id":"T23725","span":{"begin":62,"end":65},"obj":"Protein"},{"id":"T23690","span":{"begin":207,"end":210},"obj":"Protein"},{"id":"T23689","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T23688","span":{"begin":146,"end":151},"obj":"Protein"},{"id":"T23687","span":{"begin":62,"end":65},"obj":"Protein"}],"relations":[{"id":"R17535","pred":"themeOf","subj":"T23726","obj":"T23727"},{"id":"R17536","pred":"causeOf","subj":"T23727","obj":"T23728"},{"id":"R17537","pred":"themeOf","subj":"T23729","obj":"T23731"},{"id":"R17538","pred":"themeOf","subj":"T23730","obj":"T23731"},{"id":"R17539","pred":"themeOf","subj":"T23731","obj":"T23728"}],"text":"Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site."}