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PMC:3320587 / 29068-29325 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T24070 252-256 NN denotes site
T24069 244-251 NN denotes binding
T24068 238-243 NN denotes NF-κB
T24067 226-237 VB denotes overlapping
T24066 222-225 DT denotes the
T24065 219-221 TO denotes to
T24064 211-218 VB denotes binding
T24063 203-210 NN denotes p50/p65
T24062 197-202 NN denotes NF-κB
T24061 190-196 VB denotes affect
T24060 186-189 RB denotes not
T24059 181-185 VB denotes does
T24058 177-180 CC denotes but
T24057 173-176 NN denotes LTR
T24056 167-172 JJ denotes viral
T24055 163-166 DT denotes the
T24054 160-162 TO denotes to
T24053 152-159 NN denotes binding
T24052 146-151 NN denotes NFAT5
T24051 136-145 VB denotes abolishes
T24050 131-135 NN denotes site
T24049 123-130 NN denotes binding
T24048 117-122 NN denotes NFAT5
T24047 113-116 DT denotes the
T24046 110-112 IN denotes of
T24045 101-109 NN denotes mutation
T24044 92-100 JJ denotes Specific
T24043 90-91 -RRB- denotes )
T24042 89-90 NN denotes B
T24041 88-89 -LRB- denotes (
T24040 78-87 NN denotes sequence.
T24039 69-77 JJ denotes proviral
T24038 49-68 NN denotes HIV-1Lai/Bal-env–WT
T24037 45-48 DT denotes the
T24036 42-44 IN denotes of
T24035 38-41 NN denotes LTR
T24034 35-37 NN denotes 3′
T24033 31-34 DT denotes the
T24032 26-30 IN denotes into
T24031 15-25 VB denotes introduced
T24030 10-14 VB denotes were
T24029 0-9 NN denotes Mutations
R17633 T24029 T24030 arg1Of Mutations,were
R17634 T24029 T24031 arg2Of Mutations,introduced
R17635 T24031 T24030 arg2Of introduced,were
R17636 T24031 T24032 arg1Of introduced,into
R17637 T24035 T24032 arg2Of LTR,into
R17638 T24035 T24033 arg1Of LTR,the
R17639 T24035 T24034 arg1Of LTR,3′
R17640 T24035 T24036 arg1Of LTR,of
R17641 T24040 T24036 arg2Of sequence.,of
R17642 T24040 T24037 arg1Of sequence.,the
R17643 T24040 T24038 arg1Of sequence.,HIV-1Lai/Bal-env–WT
R17644 T24040 T24039 arg1Of sequence.,proviral
R17645 T24042 T24041 arg2Of B,(
R17646 T24043 T24041 arg3Of ),(
R17647 T24045 T24041 arg1Of mutation,(
R17648 T24045 T24044 arg1Of mutation,Specific
R17649 T24045 T24046 arg1Of mutation,of
R17650 T24045 T24051 arg1Of mutation,abolishes
R17651 T24045 T24059 arg1Of mutation,does
R17652 T24045 T24061 arg1Of mutation,affect
R17653 T24050 T24046 arg2Of site,of
R17654 T24050 T24047 arg1Of site,the
R17655 T24050 T24048 arg1Of site,NFAT5
R17656 T24050 T24049 arg1Of site,binding
R17657 T24051 T24058 arg1Of abolishes,but
R17658 T24053 T24051 arg2Of binding,abolishes
R17659 T24053 T24052 arg1Of binding,NFAT5
R17660 T24053 T24054 arg1Of binding,to
R17661 T24057 T24054 arg2Of LTR,to
R17662 T24057 T24055 arg1Of LTR,the
R17663 T24057 T24056 arg1Of LTR,viral
R17664 T24058 T24030 modOf but,were
R17665 T24061 T24058 arg2Of affect,but
R17666 T24061 T24059 arg2Of affect,does
R17667 T24061 T24060 arg1Of affect,not
R17668 T24063 T24061 arg2Of p50/p65,affect
R17669 T24063 T24062 arg1Of p50/p65,NF-κB
R17670 T24063 T24064 arg1Of p50/p65,binding
R17671 T24064 T24065 arg1Of binding,to
R17672 T24070 T24065 arg2Of site,to
R17673 T24070 T24066 arg1Of site,the
R17674 T24070 T24067 arg1Of site,overlapping
R17675 T24070 T24068 arg1Of site,NF-κB
R17676 T24070 T24069 arg1Of site,binding

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T23830 207-210 Protein denotes p65
T23829 203-206 Protein denotes p50
T23828 146-151 Protein denotes NFAT5
T23827 62-65 Protein denotes env

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T24344 203-206 http://www.uniprot.org/uniprot/P19838 denotes p50
T24333 62-65 http://www.uniprot.org/uniprot/P04578 denotes env
T24320 146-151 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24319 117-122 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T24352 207-210 http://www.uniprot.org/uniprot/P21579 denotes p65
T24348 207-210 http://www.uniprot.org/uniprot/Q04206 denotes p65

GO-MF

Id Subject Object Predicate Lexical cue
T23866 244-251 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23865 211-218 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23864 152-159 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T23863 123-130 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T23765 0-257 Sentence denotes Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site.
T176 0-257 Sentence denotes Mutations were introduced into the 3′ LTR of the HIV-1Lai/Bal-env–WT proviral sequence. (B) Specific mutation of the NFAT5 binding site abolishes NFAT5 binding to the viral LTR but does not affect NF-κB p50/p65 binding to the overlapping NF-κB binding site.

simple1

Id Subject Object Predicate Lexical cue
T23923 207-210 Protein denotes p65
T23922 203-206 Protein denotes p50
T23921 146-151 Protein denotes NFAT5
T23920 62-65 Protein denotes env

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T25132 152-159 Binding denotes binding
T25131 136-145 Negative_regulation denotes abolishes
T25130 211-218 Binding denotes binding
T25129 190-196 Regulation denotes affect
T25101 146-151 Protein denotes NFAT5
T25100 207-210 Protein denotes p65
T25099 203-206 Protein denotes p50
T25098 62-65 Protein denotes env
R18417 T25099 T25130 themeOf p50,binding
R18418 T25100 T25129 themeOf p65,affect
R18419 T25100 T25130 themeOf p65,binding
R18420 T25101 T25132 themeOf NFAT5,binding
R18429 T25130 T25129 themeOf binding,affect
R18430 T25130 T25129 themeOf binding,affect
R18431 T25132 T25131 themeOf binding,abolishes

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T24416 207-210 Protein denotes p65
T24415 203-206 Protein denotes p50
T24414 62-65 Protein denotes env
T24448 152-159 Binding denotes binding
T24447 190-196 Regulation denotes affect
T24446 211-218 Binding denotes binding
T24445 136-145 Negative_regulation denotes abolishes
T24417 146-151 Protein denotes NFAT5
R17947 T24415 T24446 themeOf p50,binding
R17948 T24416 T24446 themeOf p65,binding
R17949 T24417 T24448 themeOf NFAT5,binding
R17958 T24446 T24447 themeOf binding,affect
R17959 T24446 T24447 themeOf binding,affect
R17960 T24448 T24445 themeOf binding,abolishes

DLUT931

Id Subject Object Predicate Lexical cue
T24398 190-196 Regulation denotes affect
T24397 136-145 Negative_regulation denotes abolishes
T24396 211-218 Binding denotes binding
T24395 152-159 Binding denotes binding
T24366 146-151 Protein denotes NFAT5
T24365 207-210 Protein denotes p65
T24364 203-206 Protein denotes p50
T24363 62-65 Protein denotes env
R17929 T24364 T24396 themeOf p50,binding
R17930 T24364 T24396 themeOf p50,binding
R17931 T24365 T24396 themeOf p65,binding
R17932 T24366 T24395 themeOf NFAT5,binding
R17941 T24395 T24397 themeOf binding,abolishes
R17942 T24396 T24398 themeOf binding,affect
R17943 T24396 T24398 themeOf binding,affect

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T25198 146-159 Binding denotes NFAT5 binding
T25195 197-256 Binding denotes NF-κB p50/p65 binding to the overlapping NF-κB binding site
T25190 110-130 Binding denotes of the NFAT5 binding
T25187 219-256 Entity denotes to the overlapping NF-κB binding site
T25180 197-256 Protein denotes NF-κB p50/p65 binding to the overlapping NF-κB binding site
T25177 146-151 Protein denotes NFAT5
T25170 117-122 Protein denotes NFAT5
T25167 197-202 Protein denotes NF-κB
T25161 131-135 Entity denotes site
R18440 T25170 T25190 themeOf NFAT5,of the NFAT5 binding
R18442 T25177 T25198 themeOf NFAT5,NFAT5 binding
R18443 T25180 T25195 themeOf NF-κB p50/p65 binding to the overlapping NF-κB binding site,NF-κB p50/p65 binding to the overlapping NF-κB binding site

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T24811 256-257 . denotes .
T24810 252-256 NN denotes site
T24809 244-251 JJ denotes binding
T24808 238-243 NN denotes NF-κB
T24807 226-237 VBG denotes overlapping
T24806 222-225 DT denotes the
T24805 219-221 TO denotes to
T24804 211-218 JJ denotes binding
T24803 203-210 CD denotes p50/p65
T24802 197-202 NNP denotes NF-κB
T24801 190-196 VB denotes affect
T24800 186-189 RB denotes not
T24799 181-185 VBZ denotes does
T24798 177-180 CC denotes but
T24797 173-176 NNP denotes LTR
T24796 167-172 JJ denotes viral
T24795 163-166 DT denotes the
T24794 160-162 TO denotes to
T24793 152-159 JJ denotes binding
T24792 146-151 CD denotes NFAT5
T24791 136-145 VBZ denotes abolishes
T24790 131-135 NN denotes site
T24789 123-130 JJ denotes binding
T24777 66-68 NNP denotes WT
T24776 58-65 NN denotes Bal-env
T24775 57-58 NN denotes /
T24774 49-57 JJ denotes HIV-1Lai
T24773 45-48 DT denotes the
T24772 42-44 IN denotes of
T24771 38-41 NNP denotes LTR
T24770 36-37 NN denotes ′
T24769 35-36 CD denotes 3
T24768 31-34 DT denotes the
T24767 26-30 IN denotes into
T24766 15-25 VBN denotes introduced
T24765 10-14 VBD denotes were
T24764 0-9 NNS denotes Mutations
T24788 117-122 NNP denotes NFAT5
T24787 113-116 DT denotes the
T24786 110-112 IN denotes of
T24785 101-109 NN denotes mutation
T24784 92-100 JJ denotes Specific
T24783 90-91 -RRB- denotes )
T24782 89-90 NNP denotes B
T24781 88-89 -LRB- denotes (
T24780 86-87 . denotes .
T24779 78-86 NN denotes sequence
T24778 69-77 JJ denotes proviral
R18090 T24764 T24766 nsubjpass Mutations,introduced
R18091 T24765 T24766 auxpass were,introduced
R18092 T24766 T24766 ROOT introduced,introduced
R18093 T24767 T24766 prep into,introduced
R18094 T24768 T24771 det the,LTR
R18095 T24769 T24770 nummod 3,′
R18096 T24770 T24771 compound ′,LTR
R18097 T24771 T24767 pobj LTR,into
R18098 T24772 T24771 prep of,LTR
R18099 T24773 T24776 det the,Bal-env
R18100 T24774 T24776 amod HIV-1Lai,Bal-env
R18101 T24775 T24776 compound /,Bal-env
R18102 T24776 T24772 pobj Bal-env,of
R18103 T24777 T24779 nmod WT,sequence
R18104 T24778 T24779 amod proviral,sequence
R18105 T24779 T24771 appos sequence,LTR
R18106 T24780 T24766 punct .,introduced
R18107 T24781 T24782 punct (,B
R18108 T24782 T24782 ROOT B,B
R18109 T24783 T24782 punct ),B
R18110 T24784 T24785 amod Specific,mutation
R18111 T24785 T24791 nsubj mutation,abolishes
R18112 T24786 T24785 prep of,mutation
R18113 T24787 T24790 det the,site
R18114 T24788 T24790 nmod NFAT5,site
R18115 T24789 T24790 amod binding,site
R18116 T24790 T24786 pobj site,of
R18117 T24791 T24791 ROOT abolishes,abolishes
R18118 T24792 T24793 nsubj NFAT5,binding
R18119 T24793 T24791 ccomp binding,abolishes
R18120 T24794 T24793 prep to,binding
R18121 T24795 T24797 det the,LTR
R18122 T24796 T24797 amod viral,LTR
R18123 T24797 T24794 pobj LTR,to
R18124 T24798 T24793 cc but,binding
R18125 T24799 T24801 aux does,affect
R18126 T24800 T24801 neg not,affect
R18127 T24801 T24791 conj affect,abolishes
R18128 T24802 T24804 nsubj NF-κB,binding
R18129 T24803 T24802 nummod p50/p65,NF-κB
R18130 T24804 T24801 ccomp binding,affect
R18131 T24805 T24804 prep to,binding
R18132 T24806 T24810 det the,site
R18133 T24807 T24808 amod overlapping,NF-κB
R18134 T24808 T24810 amod NF-κB,site
R18135 T24809 T24810 amod binding,site
R18136 T24810 T24805 pobj site,to
R18137 T24811 T24791 punct .,abolishes

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T24527 136-145 Negative_regulation denotes abolishes
T24526 152-159 Binding denotes binding
T24525 238-256 Protein denotes NF-κB binding site
T24524 207-210 Protein denotes p65
T24523 203-206 Protein denotes p50
T24522 197-202 Protein denotes NF-κB
T24521 146-151 Protein denotes NFAT5
T24520 117-135 Protein denotes NFAT5 binding site
R17973 T24521 T24526 themeOf NFAT5,binding
R17974 T24526 T24527 themeOf binding,abolishes

testone

Id Subject Object Predicate Lexical cue
T23673 244-256 Entity denotes binding site
T23672 211-218 Binding denotes binding
T23671 190-196 Regulation denotes affect
T23641 207-210 Protein denotes p65
T23640 203-206 Protein denotes p50
T23639 146-151 Protein denotes NFAT5
T23638 62-65 Protein denotes env
R17525 T23640 T23672 themeOf p50,binding
R17526 T23641 T23672 themeOf p65,binding
R17533 T23672 T23671 themeOf binding,affect
R17534 T23673 T23672 themeOf binding site,binding

test3

Id Subject Object Predicate Lexical cue
T23731 211-218 Binding denotes binding
T23730 207-210 Protein denotes p65
T23729 203-206 Protein denotes p50
T23728 190-196 Regulation denotes affect
T23727 152-159 Binding denotes binding
T23726 146-151 Protein denotes NFAT5
T23725 62-65 Protein denotes env
T23690 207-210 Protein denotes p65
T23689 203-206 Protein denotes p50
T23688 146-151 Protein denotes NFAT5
T23687 62-65 Protein denotes env
R17535 T23726 T23727 themeOf NFAT5,binding
R17536 T23727 T23728 causeOf binding,affect
R17537 T23729 T23731 themeOf p50,binding
R17538 T23730 T23731 themeOf p65,binding
R17539 T23731 T23728 themeOf binding,affect