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PMC:3320587 / 2905-3157 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-1906500-98010767 245-246 1906500 denotes 4
22496647-11854362-98010768 249-250 11854362 denotes 6

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1210 250-251 -RRB- denotes ]
T1209 249-250 CD denotes 6
T1208 248-249 -LRB- denotes [
T1207 247-248 NN denotes –
T1206 246-247 -RRB- denotes ]
T1205 245-246 CD denotes 4
T1204 244-245 -LRB- denotes [
T1203 240-243 NN denotes LTR
T1202 234-239 NN denotes HIV-1
T1201 230-233 DT denotes the
T1200 227-229 IN denotes of
T1199 216-226 NN denotes activation
T1198 200-215 JJ denotes transcriptional
T1197 197-199 IN denotes in
T1196 190-196 VB denotes result
T1195 185-189 RB denotes also
T1194 180-184 WDT denotes that
T1193 174-179 NN denotes cells
T1192 164-173 JJ denotes monocytic
T1191 160-163 CC denotes and
T1190 154-159 NN denotes cells
T1189 152-153 NN denotes T
T1188 148-151 NN denotes CD4
T1187 145-147 IN denotes in
T1186 136-144 NN denotes pathways
T1185 123-135 NN denotes transduction
T1184 116-122 NN denotes signal
T1183 107-115 VB denotes activate
T1182 97-106 NN denotes infection
T1181 93-96 NN denotes MTb
T1180 90-92 TO denotes to
T1179 81-89 NN denotes response
T1178 78-80 IN denotes in
T1177 73-77 NN denotes host
T1176 67-72 JJ denotes human
T1175 63-66 DT denotes the
T1174 60-62 IN denotes by
T1173 51-59 VB denotes produced
T1172 40-50 NN denotes chemokines
T1171 36-39 CC denotes and
T1170 26-35 NN denotes cytokines
T1169 13-25 JJ denotes inflammatory
T1168 11-12 -COMMA- denotes ,
T1167 0-11 RB denotes Furthermore
R736 T1170 T1171 arg1Of cytokines,and
R737 T1171 T1169 arg1Of and,inflammatory
R738 T1171 T1173 arg2Of and,produced
R739 T1171 T1183 arg1Of and,activate
R740 T1172 T1171 arg2Of chemokines,and
R741 T1173 T1178 arg1Of produced,in
R742 T1177 T1173 arg1Of host,produced
R743 T1177 T1174 arg2Of host,by
R744 T1177 T1175 arg1Of host,the
R745 T1177 T1176 arg1Of host,human
R746 T1178 T1180 arg1Of in,to
R747 T1179 T1178 arg2Of response,in
R748 T1182 T1178 arg3Of infection,in
R749 T1182 T1181 arg1Of infection,MTb
R750 T1183 T1167 arg1Of activate,Furthermore
R751 T1183 T1168 arg1Of activate,","
R752 T1186 T1183 arg2Of pathways,activate
R753 T1186 T1184 arg1Of pathways,signal
R754 T1186 T1185 arg1Of pathways,transduction
R755 T1186 T1187 arg1Of pathways,in
R756 T1186 T1194 arg1Of pathways,that
R757 T1186 T1196 arg1Of pathways,result
R758 T1190 T1188 arg1Of cells,CD4
R759 T1190 T1189 arg1Of cells,T
R760 T1190 T1191 arg1Of cells,and
R761 T1191 T1187 arg2Of and,in
R762 T1193 T1191 arg2Of cells,and
R763 T1193 T1192 arg1Of cells,monocytic
R764 T1196 T1195 arg1Of result,also
R765 T1196 T1197 arg1Of result,in
R766 T1196 T1208 arg1Of result,[
R767 T1199 T1197 arg2Of activation,in
R768 T1199 T1198 arg1Of activation,transcriptional
R769 T1199 T1200 arg1Of activation,of
R770 T1205 T1204 arg2Of 4,[
R771 T1206 T1204 arg3Of ],[
R772 T1207 T1200 arg2Of –,of
R773 T1207 T1201 arg1Of –,the
R774 T1207 T1202 arg1Of –,HIV-1
R775 T1207 T1203 arg1Of –,LTR
R776 T1207 T1204 arg1Of –,[
R777 T1209 T1208 arg2Of 6,[
R778 T1210 T1208 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T979 148-151 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1772 148-151 http://www.uniprot.org/uniprot/P01730 denotes CD4

GO-BP

Id Subject Object Predicate Lexical cue
T1012 107-135 http://purl.obolibrary.org/obo/GO_1904515 denotes activate signal transduction
T1011 73-89 http://purl.obolibrary.org/obo/GO_0075136 denotes host in response
T1006 116-135 http://purl.obolibrary.org/obo/GO_0007165 denotes signal transduction
T1002 107-135 http://purl.obolibrary.org/obo/GO_1903572 denotes activate signal transduction
T1000 107-144 http://purl.obolibrary.org/obo/GO_1902533 denotes activate signal transduction pathways
T1016 107-144 http://purl.obolibrary.org/obo/GO_0038007 denotes activate signal transduction pathways
T1015 107-135 http://purl.obolibrary.org/obo/GO_1902849 denotes activate signal transduction
T1014 107-135 http://purl.obolibrary.org/obo/GO_0009967 denotes activate signal transduction
T1013 107-135 http://purl.obolibrary.org/obo/GO_1904263 denotes activate signal transduction
T1021 123-135 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction
T1020 116-144 http://purl.obolibrary.org/obo/GO_0035556 denotes signal transduction pathways
T1019 116-144 http://purl.obolibrary.org/obo/GO_0036499 denotes signal transduction pathways
T1018 116-144 http://purl.obolibrary.org/obo/GO_0036500 denotes signal transduction pathways
T1017 116-144 http://purl.obolibrary.org/obo/GO_0036498 denotes signal transduction pathways

GO-CC

Id Subject Object Predicate Lexical cue
T1049 174-179 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1048 154-159 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1047 73-77 http://purl.obolibrary.org/obo/GO_0018995 denotes host

sentences

Id Subject Object Predicate Lexical cue
T927 0-252 Sentence denotes Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6].
T19 0-252 Sentence denotes Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6].

simple1

Id Subject Object Predicate Lexical cue
T1073 148-151 Protein denotes CD4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2667 148-151 Protein denotes CD4

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1846 148-151 Protein denotes CD4

DLUT931

Id Subject Object Predicate Lexical cue
T1795 148-151 Protein denotes CD4

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2786 93-106 Regulation denotes MTb infection
T2765 26-35 Protein denotes cytokines
T2759 93-96 Protein denotes MTb
T2754 148-151 Protein denotes CD4
T2748 148-159 Entity denotes CD4 T cells
T2716 174-179 Entity denotes cells
T2705 40-59 Protein denotes chemokines produced
R2152 T2759 T2786 themeOf MTb,MTb infection

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2047 251-252 . denotes .
T2046 250-251 NNP denotes ]
T2045 249-250 CD denotes 6
T2044 248-249 NN denotes [
T2043 246-247 NNP denotes ]
T2042 245-246 CD denotes 4
T2041 244-245 NNP denotes [
T2040 240-243 NNP denotes LTR
T2039 234-239 NNP denotes HIV-1
T2038 230-233 DT denotes the
T2037 227-229 IN denotes of
T2036 216-226 NN denotes activation
T2035 200-215 JJ denotes transcriptional
T2034 197-199 IN denotes in
T2033 190-196 VBP denotes result
T2032 185-189 RB denotes also
T2031 180-184 WDT denotes that
T2030 174-179 NNS denotes cells
T2028 160-163 CC denotes and
T2027 154-159 NNS denotes cells
T2026 152-153 NNP denotes T
T2025 148-151 NNP denotes CD4
T2024 145-147 IN denotes in
T2023 136-144 NNS denotes pathways
T2022 123-135 NN denotes transduction
T2021 116-122 NN denotes signal
T2020 107-115 VBP denotes activate
T2019 97-106 NN denotes infection
T2018 93-96 NNP denotes MTb
T2017 90-92 TO denotes to
T2016 81-89 NN denotes response
T2015 78-80 IN denotes in
T2014 73-77 NN denotes host
T2013 67-72 JJ denotes human
T2012 63-66 DT denotes the
T2011 60-62 IN denotes by
T2010 51-59 VBN denotes produced
T2009 40-50 NNS denotes chemokines
T2008 36-39 CC denotes and
T2007 26-35 NNS denotes cytokines
T2006 13-25 JJ denotes inflammatory
T2005 11-12 , denotes ,
T2004 0-11 RB denotes Furthermore
T2029 164-173 JJ denotes monocytic
R1452 T2010 T2009 acl produced,chemokines
R1454 T2011 T2010 agent by,produced
R1455 T2012 T2014 det the,host
R1457 T2013 T2014 amod human,host
R1458 T2014 T2011 pobj host,by
R1459 T2015 T2010 prep in,produced
R1461 T2016 T2015 pobj response,in
R1462 T2017 T2016 prep to,response
R1463 T2018 T2020 dep MTb,activate
R1465 T2019 T2020 compound infection,activate
R1466 T2020 T2020 ROOT activate,activate
R1467 T2021 T2023 nmod signal,pathways
R1468 T2022 T2023 compound transduction,pathways
R1469 T2023 T2020 dobj pathways,activate
R1470 T2024 T2023 prep in,pathways
R1472 T2025 T2026 compound CD4,T
R1473 T2026 T2027 compound T,cells
R1474 T2027 T2024 pobj cells,in
R1476 T2028 T2027 cc and,cells
R1477 T2029 T2030 amod monocytic,cells
R1478 T2030 T2027 conj cells,cells
R1480 T2031 T2033 nsubj that,result
R1481 T2032 T2033 advmod also,result
R1482 T2033 T2023 relcl result,pathways
R1483 T2034 T2033 prep in,result
R1485 T2035 T2036 amod transcriptional,activation
R1486 T2036 T2034 pobj activation,in
R1488 T2037 T2036 prep of,activation
R1489 T2038 T2046 det the,]
R1490 T2039 T2041 compound HIV-1,[
R1491 T2040 T2041 compound LTR,[
R1493 T2041 T2046 compound [,]
R1494 T2042 T2043 nummod 4,]
R1495 T2043 T2044 nmod ],[
R1497 T2044 T2046 nmod [,]
R1498 T2045 T2044 nummod 6,[
R1499 T2046 T2037 pobj ],of
R1501 T2047 T2020 punct .,activate
R1443 T2004 T2020 advmod Furthermore,activate
R1444 T2005 T2020 punct ",",activate
R1446 T2006 T2007 amod inflammatory,cytokines
R1447 T2007 T2020 nsubj cytokines,activate
R1448 T2008 T2007 cc and,cytokines
R1450 T2009 T2007 conj chemokines,cytokines

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1881 148-153 Protein denotes CD4 T

testone

Id Subject Object Predicate Lexical cue
T854 148-151 Protein denotes CD4

test3

Id Subject Object Predicate Lexical cue
T899 148-151 Protein denotes CD4
T880 148-151 Protein denotes CD4