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PMC:3320587 / 25399-26031 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-12805416-98010794 628-630 12805416 denotes 47

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9197 9-16 VB denotes knocked
T9196 6-8 PRP denotes we
T9195 4-5 -COMMA- denotes ,
T9194 0-4 RB denotes Next
T9309 630-631 -RRB- denotes ]
T9308 628-630 CD denotes 47
T9307 627-628 -LRB- denotes [
T9306 609-626 JJ denotes post-transfection
T9305 604-608 NN denotes days
T9304 601-603 CD denotes 15
T9303 595-600 JJ denotes least
T9302 592-594 IN denotes at
T9301 589-591 TO denotes to
T9300 586-588 RB denotes up
T9299 575-585 JJ denotes functional
T9298 571-574 CC denotes and
T9297 560-570 JJ denotes detectable
T9296 552-559 VB denotes remains
T9295 544-551 NN denotes factors
T9294 539-543 NN denotes host
T9293 536-538 TO denotes to
T9292 530-535 NN denotes siRNA
T9291 528-529 -COMMA- denotes ,
T9290 523-528 NN denotes cells
T9289 510-522 JJ denotes non-dividing
T9288 506-509 VB denotes are
T9287 500-505 WDT denotes which
T9286 498-499 -COMMA- denotes ,
T9285 495-498 NN denotes MDM
T9284 489-494 JJ denotes human
T9283 486-488 IN denotes in
T9282 484-485 -COMMA- denotes ,
T9281 477-484 RB denotes rapidly
T9280 470-476 VB denotes divide
T9279 465-469 WDT denotes that
T9278 459-464 NN denotes lines
T9277 454-458 NN denotes cell
T9276 451-453 IN denotes in
T9275 445-450 NN denotes hours
T9274 439-444 CD denotes 48–72
T9273 435-438 IN denotes for
T9272 425-434 JJ denotes effective
T9271 422-424 VB denotes is
T9270 413-421 RB denotes normally
T9269 407-412 NN denotes siRNA
T9268 398-406 IN denotes although
T9267 393-397 IN denotes that
T9266 388-392 VB denotes note
T9265 385-387 PRP denotes We
T9264 382-383 -RRB- denotes )
T9263 380-382 NN denotes 2B
T9262 373-379 NN denotes Figure
T9261 372-373 -LRB- denotes (
T9260 368-371 NN denotes MDM
T9259 358-367 JJ denotes -infected
T9258 355-357 CC denotes or
T9257 340-354 JJ denotes MTb-uninfected
T9256 335-339 IN denotes into
T9255 329-334 NN denotes siRNA
T9254 325-328 NN denotes GFP
T9253 317-324 NN denotes control
T9252 314-316 IN denotes of
T9251 301-313 NN denotes transfection
T9250 298-300 TO denotes to
T9249 289-297 VB denotes compared
T9248 286-288 IN denotes as
T9247 282-285 NN denotes MDM
T9246 280-281 -RRB- denotes )
T9245 271-280 NN denotes p = 0.021
T9244 270-271 -LRB- denotes (
T9243 257-269 JJ denotes MTb-infected
T9242 253-256 CC denotes and
T9241 251-252 -RRB- denotes )
T9240 242-251 NN denotes p = 0.048
T9239 241-242 -LRB- denotes (
T9238 226-240 JJ denotes MTb-uninfected
T9237 221-225 CC denotes both
T9236 218-220 IN denotes in
T9235 211-217 NN denotes levels
T9234 206-210 NN denotes mRNA
T9233 200-205 NN denotes NFAT5
T9232 192-199 VB denotes reduces
T9231 186-191 NN denotes NFAT5
T9230 182-185 IN denotes for
T9229 173-181 JJ denotes specific
T9228 167-172 NN denotes siRNA
T9227 163-166 DT denotes the
T9226 160-162 IN denotes of
T9225 147-159 NN denotes transfection
T9224 145-146 -COMMA- denotes ,
T9223 144-145 CD denotes 2
T9222 137-143 NN denotes Figure
T9221 134-136 IN denotes in
T9220 128-133 VB denotes shown
T9219 125-127 IN denotes As
T9218 122-123 -RRB- denotes ]
T9217 120-122 CD denotes 31
T9216 119-120 -LRB- denotes [
T9215 112-118 NN denotes levels
T9214 104-111 NN denotes protein
T9213 98-103 NN denotes NFAT5
T9212 94-97 CC denotes and
T9211 89-93 NN denotes mRNA
T9210 83-88 NN denotes NFAT5
T9209 78-82 CC denotes both
T9208 67-77 VB denotes suppresses
T9207 62-66 WDT denotes that
T9206 56-61 NN denotes siRNA
T9205 53-55 DT denotes an
T9204 47-52 VB denotes using
T9203 43-46 NN denotes MDM
T9202 40-42 IN denotes in
T9201 33-39 NN denotes levels
T9200 28-32 NN denotes mRNA
T9199 22-27 NN denotes NFAT5
T9198 17-21 RB denotes down
R7210 T9196 T9197 arg1Of we,knocked
R7211 T9197 T9194 arg1Of knocked,Next
R7212 T9197 T9195 arg1Of knocked,","
R7213 T9197 T9198 arg1Of knocked,down
R7214 T9201 T9197 arg2Of levels,knocked
R7215 T9201 T9199 arg1Of levels,NFAT5
R7216 T9201 T9200 arg1Of levels,mRNA
R7217 T9201 T9202 arg1Of levels,in
R7218 T9201 T9204 arg1Of levels,using
R7219 T9203 T9202 arg2Of MDM,in
R7220 T9206 T9204 arg2Of siRNA,using
R7221 T9206 T9205 arg1Of siRNA,an
R7222 T9206 T9207 arg1Of siRNA,that
R7223 T9206 T9208 arg1Of siRNA,suppresses
R7224 T9211 T9210 arg1Of mRNA,NFAT5
R7225 T9211 T9212 arg1Of mRNA,and
R7226 T9212 T9208 arg2Of and,suppresses
R7227 T9212 T9209 arg1Of and,both
R7228 T9212 T9216 arg1Of and,[
R7229 T9215 T9212 arg2Of levels,and
R7230 T9215 T9213 arg1Of levels,NFAT5
R7231 T9215 T9214 arg1Of levels,protein
R7232 T9217 T9216 arg2Of 31,[
R7233 T9218 T9216 arg3Of ],[
R7234 T9220 T9219 arg2Of shown,As
R7235 T9220 T9221 arg1Of shown,in
R7236 T9222 T9221 arg2Of Figure,in
R7237 T9222 T9223 arg1Of Figure,2
R7238 T9225 T9226 arg1Of transfection,of
R7239 T9225 T9232 arg1Of transfection,reduces
R7240 T9228 T9226 arg2Of siRNA,of
R7241 T9228 T9227 arg1Of siRNA,the
R7242 T9228 T9229 arg1Of siRNA,specific
R7243 T9229 T9230 arg1Of specific,for
R7244 T9231 T9230 arg2Of NFAT5,for
R7245 T9232 T9219 arg1Of reduces,As
R7246 T9232 T9224 arg1Of reduces,","
R7247 T9232 T9236 arg1Of reduces,in
R7248 T9235 T9232 arg2Of levels,reduces
R7249 T9235 T9233 arg1Of levels,NFAT5
R7250 T9235 T9234 arg1Of levels,mRNA
R7251 T9238 T9239 arg1Of MTb-uninfected,(
R7252 T9238 T9242 arg1Of MTb-uninfected,and
R7253 T9240 T9239 arg2Of p = 0.048,(
R7254 T9241 T9239 arg3Of ),(
R7255 T9242 T9236 arg2Of and,in
R7256 T9242 T9237 arg1Of and,both
R7257 T9242 T9248 arg1Of and,as
R7258 T9245 T9244 arg2Of p = 0.021,(
R7259 T9246 T9244 arg3Of ),(
R7260 T9247 T9242 arg2Of MDM,and
R7261 T9247 T9243 arg1Of MDM,MTb-infected
R7262 T9247 T9244 arg1Of MDM,(
R7263 T9249 T9248 arg2Of compared,as
R7264 T9249 T9250 arg1Of compared,to
R7265 T9251 T9250 arg2Of transfection,to
R7266 T9251 T9252 arg1Of transfection,of
R7267 T9255 T9252 arg2Of siRNA,of
R7268 T9255 T9253 arg1Of siRNA,control
R7269 T9255 T9254 arg1Of siRNA,GFP
R7270 T9255 T9256 arg1Of siRNA,into
R7271 T9257 T9258 arg1Of MTb-uninfected,or
R7272 T9259 T9258 arg2Of -infected,or
R7273 T9260 T9256 arg2Of MDM,into
R7274 T9260 T9257 arg1Of MDM,MTb-uninfected
R7275 T9260 T9259 arg1Of MDM,-infected
R7276 T9260 T9261 arg1Of MDM,(
R7277 T9263 T9261 arg2Of 2B,(
R7278 T9263 T9262 arg1Of 2B,Figure
R7279 T9264 T9261 arg3Of ),(
R7280 T9265 T9266 arg1Of We,note
R7281 T9269 T9271 arg1Of siRNA,is
R7282 T9269 T9272 arg1Of siRNA,effective
R7283 T9271 T9268 arg2Of is,although
R7284 T9271 T9270 arg1Of is,normally
R7285 T9272 T9271 arg2Of effective,is
R7286 T9272 T9273 arg1Of effective,for
R7287 T9275 T9273 arg2Of hours,for
R7288 T9275 T9274 arg1Of hours,48–72
R7289 T9275 T9276 arg1Of hours,in
R7290 T9278 T9276 arg2Of lines,in
R7291 T9278 T9277 arg1Of lines,cell
R7292 T9278 T9279 arg1Of lines,that
R7293 T9278 T9280 arg1Of lines,divide
R7294 T9280 T9281 arg1Of divide,rapidly
R7295 T9285 T9283 arg2Of MDM,in
R7296 T9285 T9284 arg1Of MDM,human
R7297 T9285 T9286 arg1Of MDM,","
R7298 T9285 T9287 arg1Of MDM,which
R7299 T9285 T9288 arg1Of MDM,are
R7300 T9290 T9288 arg2Of cells,are
R7301 T9290 T9289 arg1Of cells,non-dividing
R7302 T9292 T9293 arg1Of siRNA,to
R7303 T9292 T9296 arg1Of siRNA,remains
R7304 T9292 T9297 arg1Of siRNA,detectable
R7305 T9292 T9299 arg1Of siRNA,functional
R7306 T9295 T9293 arg2Of factors,to
R7307 T9295 T9294 arg1Of factors,host
R7308 T9296 T9266 arg2Of remains,note
R7309 T9296 T9267 arg1Of remains,that
R7310 T9296 T9268 arg1Of remains,although
R7311 T9296 T9282 arg1Of remains,","
R7312 T9296 T9283 arg1Of remains,in
R7313 T9296 T9291 arg1Of remains,","
R7314 T9296 T9307 arg1Of remains,[
R7315 T9297 T9298 arg1Of detectable,and
R7316 T9298 T9296 arg2Of and,remains
R7317 T9299 T9298 arg2Of functional,and
R7318 T9299 T9301 arg1Of functional,to
R7319 T9301 T9300 arg1Of to,up
R7320 T9304 T9302 arg1Of 15,at
R7321 T9304 T9303 arg1Of 15,least
R7322 T9305 T9301 arg2Of days,to
R7323 T9305 T9304 arg1Of days,15
R7324 T9305 T9306 arg1Of days,post-transfection
R7325 T9308 T9307 arg2Of 47,[
R7326 T9309 T9307 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T8914 325-328 Protein denotes GFP
T8913 200-205 Protein denotes NFAT5
T8912 186-191 Protein denotes NFAT5
T8911 98-103 Protein denotes NFAT5
T8910 83-88 Protein denotes NFAT5
T8909 22-27 Protein denotes NFAT5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9465 200-205 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T9464 186-191 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T9463 98-103 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T9462 83-88 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T9461 22-27 http://www.uniprot.org/uniprot/O94916 denotes NFAT5
T9475 325-328 http://www.uniprot.org/uniprot/Q9U6Y4 denotes GFP

GO-CC

Id Subject Object Predicate Lexical cue
T8938 523-528 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T8937 454-458 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T8942 539-543 http://purl.obolibrary.org/obo/GO_0018995 denotes host

sentences

Id Subject Object Predicate Lexical cue
T8859 385-632 Sentence denotes We note that although siRNA normally is effective for 48–72 hours in cell lines that divide rapidly, in human MDM, which are non-dividing cells, siRNA to host factors remains detectable and functional up to at least 15 days post-transfection [47].
T8858 125-384 Sentence denotes As shown in Figure 2, transfection of the siRNA specific for NFAT5 reduces NFAT5 mRNA levels in both MTb-uninfected (p = 0.048) and MTb-infected (p = 0.021) MDM as compared to transfection of control GFP siRNA into MTb-uninfected or -infected MDM (Figure 2B).
T8857 0-124 Sentence denotes Next, we knocked down NFAT5 mRNA levels in MDM using an siRNA that suppresses both NFAT5 mRNA and NFAT5 protein levels [31].
T157 0-124 Sentence denotes Next, we knocked down NFAT5 mRNA levels in MDM using an siRNA that suppresses both NFAT5 mRNA and NFAT5 protein levels [31].
T158 125-384 Sentence denotes As shown in Figure 2, transfection of the siRNA specific for NFAT5 reduces NFAT5 mRNA levels in both MTb-uninfected (p = 0.048) and MTb-infected (p = 0.021) MDM as compared to transfection of control GFP siRNA into MTb-uninfected or -infected MDM (Figure 2B).
T159 385-632 Sentence denotes We note that although siRNA normally is effective for 48–72 hours in cell lines that divide rapidly, in human MDM, which are non-dividing cells, siRNA to host factors remains detectable and functional up to at least 15 days post-transfection [47].

simple1

Id Subject Object Predicate Lexical cue
T8981 325-328 Protein denotes GFP
T8980 200-205 Protein denotes NFAT5
T8979 186-191 Protein denotes NFAT5
T8978 98-103 Protein denotes NFAT5
T8977 83-88 Protein denotes NFAT5
T8976 22-27 Protein denotes NFAT5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10185 192-199 Negative_regulation denotes reduces
T10184 211-217 Transcription denotes levels
T10183 9-16 Negative_regulation denotes knocked
T10182 33-39 Transcription denotes levels
T10181 112-118 Transcription denotes levels
T10180 67-77 Negative_regulation denotes suppresses
T10168 325-328 Protein denotes GFP
T10167 200-205 Protein denotes NFAT5
T10166 186-191 Protein denotes NFAT5
T10165 98-103 Protein denotes NFAT5
T10164 83-88 Protein denotes NFAT5
T10163 22-27 Protein denotes NFAT5
R8045 T10163 T10183 themeOf NFAT5,knocked
R8046 T10163 T10182 themeOf NFAT5,levels
R8047 T10164 T10180 themeOf NFAT5,suppresses
R8048 T10164 T10181 themeOf NFAT5,levels
R8049 T10165 T10180 themeOf NFAT5,suppresses
R8050 T10165 T10181 themeOf NFAT5,levels
R8051 T10167 T10185 themeOf NFAT5,reduces
R8052 T10167 T10184 themeOf NFAT5,levels

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9561 83-88 Protein denotes NFAT5
T9560 22-27 Protein denotes NFAT5
T9563 186-191 Protein denotes NFAT5
T9562 98-103 Protein denotes NFAT5
T9581 192-199 Negative_regulation denotes reduces
T9580 17-21 Negative_regulation denotes down
T9565 325-328 Protein denotes GFP
T9564 200-205 Protein denotes NFAT5
R7519 T9560 T9580 themeOf NFAT5,down
R7520 T9564 T9581 themeOf NFAT5,reduces

DLUT931

Id Subject Object Predicate Lexical cue
T9541 192-199 Negative_regulation denotes reduces
T9540 329-334 Negative_regulation denotes siRNA
T9539 211-217 Transcription denotes levels
T9538 33-39 Transcription denotes levels
T9520 325-328 Protein denotes GFP
T9519 200-205 Protein denotes NFAT5
T9518 186-191 Protein denotes NFAT5
T9517 98-103 Protein denotes NFAT5
T9516 83-88 Protein denotes NFAT5
T9515 22-27 Protein denotes NFAT5
R7495 T9515 T9538 themeOf NFAT5,levels
R7496 T9519 T9539 themeOf NFAT5,levels
R7497 T9520 T9540 themeOf GFP,siRNA
R7511 T9539 T9541 themeOf levels,reduces

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10250 226-229 Protein denotes MTb
T10248 200-205 Protein denotes NFAT5
T10245 282-285 Protein denotes MDM
T10241 98-123 Protein denotes NFAT5 protein levels [31]
T10239 186-191 Protein denotes NFAT5
T10234 98-103 Protein denotes NFAT5
T10233 257-260 Protein denotes MTb
T10232 83-88 Protein denotes NFAT5
T10231 43-46 Protein denotes MDM
T10229 510-528 Entity denotes non-dividing cells
T10223 83-93 Protein denotes NFAT5 mRNA
T10221 22-27 Protein denotes NFAT5
T10218 368-383 Protein denotes MDM (Figure 2B)
T10217 489-529 Protein denotes human MDM, which are non-dividing cells,
T10210 325-328 Protein denotes GFP
T10206 22-123 Protein denotes NFAT5 mRNA levels in MDM using an siRNA that suppresses both NFAT5 mRNA and NFAT5 protein levels [31]
T10205 271-275 Entity denotes p = 
T10194 242-246 Entity denotes p = 
T10192 340-343 Protein denotes MTb

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9998 631-632 . denotes .
T9997 630-631 NNP denotes ]
T9996 628-630 CD denotes 47
T9995 627-628 NNP denotes [
T9994 609-626 JJ denotes post-transfection
T9993 604-608 NNS denotes days
T9992 601-603 CD denotes 15
T9991 595-600 JJS denotes least
T9990 592-594 IN denotes at
T9989 589-591 TO denotes to
T9988 586-588 IN denotes up
T9987 575-585 JJ denotes functional
T9986 571-574 CC denotes and
T9985 560-570 JJ denotes detectable
T9984 552-559 VBZ denotes remains
T9983 544-551 NNS denotes factors
T9982 539-543 VB denotes host
T9981 536-538 TO denotes to
T9980 530-535 NNP denotes siRNA
T9979 528-529 , denotes ,
T9978 523-528 NNS denotes cells
T9977 510-522 JJ denotes non-dividing
T9976 506-509 VBP denotes are
T9975 500-505 WDT denotes which
T9974 498-499 , denotes ,
T9973 495-498 NNP denotes MDM
T9972 489-494 JJ denotes human
T9971 486-488 IN denotes in
T9970 484-485 , denotes ,
T9969 477-484 RB denotes rapidly
T9968 470-476 VBP denotes divide
T9967 465-469 WDT denotes that
T9966 459-464 NNS denotes lines
T9965 454-458 NN denotes cell
T9964 451-453 IN denotes in
T9963 445-450 NNS denotes hours
T9962 442-444 CD denotes 72
T9961 439-441 CD denotes 48
T9960 435-438 IN denotes for
T9959 425-434 JJ denotes effective
T9958 422-424 VBZ denotes is
T9957 413-421 RB denotes normally
T9956 407-412 JJ denotes siRNA
T9955 398-406 IN denotes although
T9954 393-397 IN denotes that
T9953 388-392 VBP denotes note
T9952 385-387 PRP denotes We
T9951 383-384 . denotes .
T9950 382-383 -RRB- denotes )
T9949 380-382 NNP denotes 2B
T9948 373-379 NNP denotes Figure
T9947 372-373 -LRB- denotes (
T9946 368-371 NNP denotes MDM
T9945 359-367 JJ denotes infected
T9944 358-359 : denotes -
T9943 355-357 CC denotes or
T9942 340-354 NNP denotes MTb-uninfected
T9941 335-339 IN denotes into
T9940 329-334 NNP denotes siRNA
T9939 325-328 NNP denotes GFP
T9938 317-324 NN denotes control
T9937 314-316 IN denotes of
T9936 301-313 NN denotes transfection
T9935 298-300 TO denotes to
T9934 289-297 VBN denotes compared
T9933 286-288 IN denotes as
T9932 282-285 NNP denotes MDM
T9931 280-281 -RRB- denotes )
T9930 275-280 CD denotes 0.021
T9929 273-274 SYM denotes =
T9928 271-272 FW denotes p
T9927 270-271 -LRB- denotes (
T9926 257-269 NNP denotes MTb-infected
T9925 253-256 CC denotes and
T9924 251-252 -RRB- denotes )
T9923 246-251 CD denotes 0.048
T9922 244-245 SYM denotes =
T9921 242-243 FW denotes p
T9920 241-242 -LRB- denotes (
T9919 226-240 JJ denotes MTb-uninfected
T9918 221-225 DT denotes both
T9917 218-220 IN denotes in
T9916 211-217 NNS denotes levels
T9915 206-210 NNP denotes mRNA
T9914 200-205 NNP denotes NFAT5
T9913 192-199 VBZ denotes reduces
T9912 186-191 NNP denotes NFAT5
T9911 182-185 IN denotes for
T9910 173-181 NN denotes specific
T9909 167-172 NNP denotes siRNA
T9908 163-166 DT denotes the
T9907 160-162 IN denotes of
T9906 147-159 NN denotes transfection
T9905 145-146 , denotes ,
T9904 144-145 CD denotes 2
T9903 137-143 NN denotes Figure
T9902 134-136 IN denotes in
T9901 128-133 VBN denotes shown
T9900 125-127 IN denotes As
T9899 123-124 . denotes .
T9898 122-123 NNP denotes ]
T9897 120-122 CD denotes 31
T9896 119-120 NNP denotes [
T9895 112-118 NNS denotes levels
T9894 104-111 NN denotes protein
T9893 98-103 NNP denotes NFAT5
T9892 94-97 CC denotes and
T9891 89-93 NNP denotes mRNA
T9890 83-88 CD denotes NFAT5
T9889 78-82 DT denotes both
T9888 67-77 VBZ denotes suppresses
T9887 62-66 WDT denotes that
T9886 56-61 NN denotes siRNA
T9885 53-55 DT denotes an
T9884 47-52 VBG denotes using
T9883 43-46 NNP denotes MDM
T9882 40-42 IN denotes in
T9881 33-39 NNS denotes levels
T9880 28-32 JJ denotes mRNA
T9879 22-27 CD denotes NFAT5
T9878 17-21 RP denotes down
T9877 9-16 VBD denotes knocked
T9876 6-8 PRP denotes we
T9875 4-5 , denotes ,
T9874 0-4 JJ denotes Next
R7763 T9874 T9877 advmod Next,knocked
R7764 T9875 T9877 punct ",",knocked
R7765 T9876 T9877 nsubj we,knocked
R7766 T9877 T9877 ROOT knocked,knocked
R7767 T9878 T9877 prt down,knocked
R7768 T9879 T9881 nummod NFAT5,levels
R7769 T9880 T9881 amod mRNA,levels
R7770 T9881 T9877 dobj levels,knocked
R7771 T9882 T9877 prep in,knocked
R7772 T9883 T9882 pobj MDM,in
R7773 T9884 T9877 advcl using,knocked
R7774 T9885 T9886 det an,siRNA
R7775 T9886 T9884 dobj siRNA,using
R7776 T9887 T9888 nsubj that,suppresses
R7777 T9888 T9886 relcl suppresses,siRNA
R7778 T9889 T9891 preconj both,mRNA
R7779 T9890 T9891 nummod NFAT5,mRNA
R7780 T9891 T9895 nmod mRNA,levels
R7781 T9892 T9891 cc and,mRNA
R7782 T9893 T9891 conj NFAT5,mRNA
R7783 T9894 T9895 compound protein,levels
R7784 T9895 T9888 dobj levels,suppresses
R7785 T9896 T9898 nmod [,]
R7786 T9897 T9898 nummod 31,]
R7787 T9898 T9895 appos ],levels
R7788 T9899 T9877 punct .,knocked
R7789 T9900 T9901 mark As,shown
R7790 T9901 T9913 advcl shown,reduces
R7791 T9902 T9901 prep in,shown
R7792 T9903 T9902 pobj Figure,in
R7793 T9904 T9903 nummod 2,Figure
R7794 T9905 T9903 punct ",",Figure
R7795 T9906 T9913 nsubj transfection,reduces
R7796 T9907 T9906 prep of,transfection
R7797 T9908 T9910 det the,specific
R7798 T9909 T9910 compound siRNA,specific
R7799 T9910 T9907 pobj specific,of
R7800 T9911 T9906 prep for,transfection
R7801 T9912 T9911 pobj NFAT5,for
R7802 T9913 T9913 ROOT reduces,reduces
R7803 T9914 T9915 compound NFAT5,mRNA
R7804 T9915 T9916 compound mRNA,levels
R7805 T9916 T9913 dobj levels,reduces
R7806 T9917 T9916 prep in,levels
R7807 T9918 T9919 det both,MTb-uninfected
R7808 T9919 T9917 pobj MTb-uninfected,in
R7809 T9920 T9919 punct (,MTb-uninfected
R7810 T9921 T9919 conj p,MTb-uninfected
R7811 T9922 T9923 punct =,0.048
R7812 T9923 T9921 prep 0.048,p
R7813 T9924 T9921 punct ),p
R7814 T9925 T9919 cc and,MTb-uninfected
R7815 T9926 T9919 conj MTb-infected,MTb-uninfected
R7816 T9927 T9926 punct (,MTb-infected
R7817 T9928 T9932 meta p,MDM
R7818 T9929 T9930 punct =,0.021
R7819 T9930 T9928 prep 0.021,p
R7820 T9931 T9928 punct ),p
R7821 T9932 T9913 dobj MDM,reduces
R7822 T9933 T9934 mark as,compared
R7823 T9934 T9913 advcl compared,reduces
R7824 T9935 T9934 prep to,compared
R7825 T9936 T9945 npadvmod transfection,infected
R7826 T9937 T9936 prep of,transfection
R7827 T9938 T9937 pobj control,of
R7828 T9939 T9940 compound GFP,siRNA
R7829 T9940 T9936 appos siRNA,transfection
R7830 T9941 T9940 prep into,siRNA
R7831 T9942 T9941 pobj MTb-uninfected,into
R7832 T9943 T9936 cc or,transfection
R7833 T9944 T9945 punct -,infected
R7834 T9945 T9946 amod infected,MDM
R7835 T9946 T9935 pobj MDM,to
R7836 T9947 T9949 punct (,2B
R7837 T9948 T9949 compound Figure,2B
R7838 T9949 T9946 appos 2B,MDM
R7839 T9950 T9949 punct ),2B
R7840 T9951 T9913 punct .,reduces
R7841 T9952 T9953 nsubj We,note
R7842 T9953 T9953 ROOT note,note
R7843 T9954 T9984 mark that,remains
R7844 T9955 T9958 mark although,is
R7845 T9956 T9958 nsubj siRNA,is
R7846 T9957 T9958 advmod normally,is
R7847 T9958 T9984 advcl is,remains
R7848 T9959 T9958 acomp effective,is
R7849 T9960 T9959 prep for,effective
R7850 T9961 T9963 nummod 48,hours
R7851 T9962 T9963 nummod 72,hours
R7852 T9963 T9960 pobj hours,for
R7853 T9964 T9958 prep in,is
R7854 T9965 T9966 compound cell,lines
R7855 T9966 T9964 pobj lines,in
R7856 T9967 T9968 nsubj that,divide
R7857 T9968 T9966 relcl divide,lines
R7858 T9969 T9968 advmod rapidly,divide
R7859 T9970 T9968 punct ",",divide
R7860 T9971 T9968 prep in,divide
R7861 T9972 T9973 amod human,MDM
R7862 T9973 T9971 pobj MDM,in
R7863 T9974 T9973 punct ",",MDM
R7864 T9975 T9976 nsubj which,are
R7865 T9976 T9966 relcl are,lines
R7866 T9977 T9978 amod non-dividing,cells
R7867 T9978 T9976 attr cells,are
R7868 T9979 T9966 punct ",",lines
R7869 T9980 T9966 appos siRNA,lines
R7870 T9981 T9982 aux to,host
R7871 T9982 T9958 xcomp host,is
R7872 T9983 T9982 dobj factors,host
R7873 T9984 T9953 ccomp remains,note
R7874 T9985 T9984 acomp detectable,remains
R7875 T9986 T9985 cc and,detectable
R7876 T9987 T9985 conj functional,detectable
R7877 T9988 T9992 quantmod up,15
R7878 T9989 T9992 quantmod to,15
R7879 T9990 T9991 advmod at,least
R7880 T9991 T9992 advmod least,15
R7881 T9992 T9993 nummod 15,days
R7882 T9993 T9994 npadvmod days,post-transfection
R7883 T9994 T9995 compound post-transfection,[
R7884 T9995 T9997 nmod [,]
R7885 T9996 T9997 nummod 47,]
R7886 T9997 T9984 dobj ],remains
R7887 T9998 T9953 punct .,note

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9609 147-159 Positive_regulation denotes transfection
T9608 147-159 Gene_expression denotes transfection
T9607 325-334 Protein denotes GFP siRNA
T9606 200-210 Protein denotes NFAT5 mRNA
T9605 167-191 Protein denotes siRNA specific for NFAT5
T9604 67-77 Negative_regulation denotes suppresses
T9603 67-77 Negative_regulation denotes suppresses
T9602 17-21 Negative_regulation denotes down
T9601 98-111 Protein denotes NFAT5 protein
T9600 83-93 Protein denotes NFAT5 mRNA
T9599 22-32 Protein denotes NFAT5 mRNA
R7530 T9599 T9602 themeOf NFAT5 mRNA,down
R7531 T9600 T9603 themeOf NFAT5 mRNA,suppresses
R7532 T9601 T9604 themeOf NFAT5 protein,suppresses
R7533 T9605 T9608 themeOf siRNA specific for NFAT5,transfection
R7534 T9608 T9609 themeOf transfection,transfection

testone

Id Subject Object Predicate Lexical cue
T8800 67-77 Negative_regulation denotes suppresses
T8799 9-21 Negative_regulation denotes knocked down
T8789 325-328 Protein denotes GFP
T8788 200-205 Protein denotes NFAT5
T8787 186-191 Protein denotes NFAT5
T8786 98-103 Protein denotes NFAT5
T8785 83-88 Protein denotes NFAT5
T8784 22-27 Protein denotes NFAT5
R6986 T8784 T8799 themeOf NFAT5,knocked down
R6987 T8785 T8800 themeOf NFAT5,suppresses
R6988 T8786 T8800 themeOf NFAT5,suppresses

test3

Id Subject Object Predicate Lexical cue
T8841 325-328 Protein denotes GFP
T8840 200-205 Protein denotes NFAT5
T8839 186-191 Protein denotes NFAT5
T8838 98-103 Protein denotes NFAT5
T8837 83-88 Protein denotes NFAT5
T8836 22-27 Protein denotes NFAT5
T8817 325-328 Protein denotes GFP
T8816 200-205 Protein denotes NFAT5
T8815 186-191 Protein denotes NFAT5
T8814 98-103 Protein denotes NFAT5
T8813 83-88 Protein denotes NFAT5
T8812 22-27 Protein denotes NFAT5