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PMC:3320587 / 2501-3574 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22496647-17359235-98010766 399-400 17359235 denotes 3
22496647-1906500-98010767 649-650 1906500 denotes 4
22496647-11854362-98010768 653-654 11854362 denotes 6
22496647-17263638-98010769 825-826 17263638 denotes 7
22496647-21852682-98010770 846-848 21852682 denotes 10
22496647-1345800-98010771 1045-1047 1345800 denotes 11
22496647-20299961-98010772 1050-1052 20299961 denotes 15

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1281 1030-1032 NN denotes TB
T1280 1022-1029 JJ denotes primary
T1279 1019-1021 TO denotes to
T1278 1004-1018 NN denotes susceptibility
T1277 994-1003 VB denotes increased
T1276 991-993 IN denotes as
T1275 986-990 RB denotes well
T1274 983-985 RB denotes as
T1273 981-982 -COMMA- denotes ,
T1272 969-981 NN denotes reactivation
T1271 965-968 NN denotes MTb
T1270 958-964 JJ denotes latent
T1269 955-957 IN denotes of
T1268 949-954 NN denotes cause
T1267 943-948 JJ denotes major
T1266 941-942 DT denotes a
T1265 938-940 VB denotes is
T1264 931-937 PRP denotes itself
T1263 921-930 NN denotes infection
T1262 915-920 NN denotes HIV-1
T1261 910-914 IN denotes with
T1260 899-909 VB denotes associated
T1259 888-898 NN denotes compromise
T1258 881-887 JJ denotes immune
T1257 869-880 JJ denotes progressive
T1256 865-868 DT denotes the
T1255 863-864 -COMMA- denotes ,
T1254 852-863 RB denotes Furthermore
T1253 849-850 -RRB- denotes )
T1252 848-849 -RRB- denotes ]
T1251 846-848 CD denotes 10
T1250 845-846 -LRB- denotes [
T1249 844-845 NN denotes –
T1248 843-844 -RRB- denotes ]
T1247 842-843 CD denotes 8
T1246 841-842 -LRB- denotes [
T1245 838-840 IN denotes in
T1244 829-837 VB denotes reviewed
T1243 827-828 -COMMA- denotes ,
T1242 826-827 -RRB- denotes ]
T1241 825-826 CD denotes 7
T1240 824-825 -LRB- denotes [
T1239 823-824 -LRB- denotes (
T1238 818-822 NN denotes AIDS
T1237 815-817 TO denotes to
T1236 803-814 NN denotes progression
T1235 799-802 CC denotes and
T1234 794-798 NN denotes loss
T1233 789-793 NN denotes cell
T1232 787-788 NN denotes T
T1231 783-786 NN denotes CD4
T1230 773-782 VB denotes expedited
T1229 771-772 -COMMA- denotes ,
T1228 767-771 NN denotes turn
T1227 764-766 IN denotes in
T1226 762-763 -COMMA- denotes ,
T1225 759-762 CC denotes and
T1224 753-758 NN denotes loads
T1223 747-752 JJ denotes viral
T1222 740-746 JJ denotes higher
T1221 737-739 TO denotes to
T1220 731-736 VB denotes leads
T1219 720-730 RB denotes ultimately
T1218 711-719 NN denotes pathways
T1217 699-710 JJ denotes MTb-induced
T1216 693-698 DT denotes these
T1215 689-692 IN denotes via
T1214 677-688 NN denotes replication
T1213 671-676 NN denotes HIV-1
T1212 668-670 IN denotes of
T1211 657-667 NN denotes Activation
T1210 654-655 -RRB- denotes ]
T1209 653-654 CD denotes 6
T1208 652-653 -LRB- denotes [
T1207 651-652 NN denotes –
T1206 650-651 -RRB- denotes ]
T1205 649-650 CD denotes 4
T1204 648-649 -LRB- denotes [
T1203 644-647 NN denotes LTR
T1202 638-643 NN denotes HIV-1
T1201 634-637 DT denotes the
T1200 631-633 IN denotes of
T1199 620-630 NN denotes activation
T1198 604-619 JJ denotes transcriptional
T1197 601-603 IN denotes in
T1196 594-600 VB denotes result
T1195 589-593 RB denotes also
T1194 584-588 WDT denotes that
T1193 578-583 NN denotes cells
T1192 568-577 JJ denotes monocytic
T1191 564-567 CC denotes and
T1190 558-563 NN denotes cells
T1189 556-557 NN denotes T
T1188 552-555 NN denotes CD4
T1187 549-551 IN denotes in
T1186 540-548 NN denotes pathways
T1185 527-539 NN denotes transduction
T1184 520-526 NN denotes signal
T1183 511-519 VB denotes activate
T1182 501-510 NN denotes infection
T1181 497-500 NN denotes MTb
T1180 494-496 TO denotes to
T1179 485-493 NN denotes response
T1178 482-484 IN denotes in
T1177 477-481 NN denotes host
T1176 471-476 JJ denotes human
T1175 467-470 DT denotes the
T1174 464-466 IN denotes by
T1173 455-463 VB denotes produced
T1172 444-454 NN denotes chemokines
T1171 440-443 CC denotes and
T1170 430-439 NN denotes cytokines
T1169 417-429 JJ denotes inflammatory
T1168 415-416 -COMMA- denotes ,
T1167 404-415 RB denotes Furthermore
T1166 401-402 -RRB- denotes )
T1165 400-401 -RRB- denotes ]
T1164 399-400 CD denotes 3
T1163 398-399 -LRB- denotes [
T1162 395-397 IN denotes in
T1161 386-394 VB denotes reviewed
T1160 385-386 -LRB- denotes (
T1159 381-384 NN denotes LTR
T1158 372-380 JJ denotes proviral
T1157 368-371 DT denotes the
T1156 363-367 IN denotes from
T1155 349-362 NN denotes transcription
T1154 342-348 VB denotes induce
T1153 333-341 RB denotes directly
T1152 328-332 WDT denotes that
T1151 319-327 NN denotes cascades
T1150 309-318 NN denotes signaling
T1149 299-308 VB denotes activates
T1148 288-298 NN denotes phagocytes
T1147 276-287 JJ denotes mononuclear
T1146 273-275 IN denotes on
T1145 269-272 NN denotes MTb
T1144 266-268 IN denotes by
T1143 264-265 -RRB- denotes )
T1142 260-264 NN denotes PRRs
T1141 259-260 -LRB- denotes (
T1140 249-258 NN denotes receptors
T1139 237-248 NN denotes recognition
T1138 228-236 NN denotes pathogen
T1137 225-227 IN denotes of
T1136 214-224 NN denotes engagement
T1135 207-213 JJ denotes Direct
T1134 204-205 -RRB- denotes ]
T1133 203-204 CD denotes 2
T1132 202-203 -LRB- denotes [
T1131 200-201 -COMMA- denotes ,
T1130 199-200 -RRB- denotes ]
T1129 198-199 CD denotes 1
T1128 197-198 -LRB- denotes [
T1127 195-196 -RRB- denotes )
T1126 190-195 NN denotes HIV-1
T1125 189-190 -LRB- denotes (
T1124 187-188 CD denotes 1
T1123 182-186 NN denotes type
T1122 176-181 NN denotes virus
T1121 159-175 NN denotes immunodeficiency
T1120 153-158 JJ denotes human
T1119 148-152 IN denotes with
T1118 139-147 VB denotes infected
T1117 130-138 NN denotes patients
T1116 127-129 IN denotes in
T1115 121-126 NN denotes death
T1114 118-120 IN denotes of
T1113 112-117 NN denotes cause
T1112 108-111 CC denotes and
T1111 95-107 NN denotes co-infection
T1110 88-94 JJ denotes common
T1109 83-87 RB denotes most
T1108 79-82 DT denotes the
T1107 76-78 VB denotes is
T1106 74-75 -COMMA- denotes ,
T1105 73-74 -RRB- denotes )
T1104 71-73 NN denotes TB
T1103 70-71 -LRB- denotes (
T1102 57-69 NN denotes tuberculosis
T1101 54-56 IN denotes of
T1100 48-53 NN denotes agent
T1099 38-47 JJ denotes causative
T1098 34-37 DT denotes the
T1097 32-33 -COMMA- denotes ,
T1096 31-32 -RRB- denotes )
T1095 28-31 NN denotes MTb
T1094 27-28 -LRB- denotes (
T1093 14-26 NN denotes tuberculosis
T1092 0-13 NN denotes Mycobacterium
T1297 1070-1071 -RRB- denotes )
T1296 1069-1070 -RRB- denotes ]
T1295 1068-1069 CD denotes 8
T1294 1067-1068 -LRB- denotes [
T1293 1064-1066 IN denotes in
T1292 1055-1063 VB denotes reviewed
T1291 1053-1054 -COMMA- denotes ,
T1290 1052-1053 -RRB- denotes ]
T1289 1050-1052 CD denotes 15
T1288 1049-1050 -LRB- denotes [
T1287 1048-1049 CD denotes –
T1286 1047-1048 -RRB- denotes ]
T1285 1045-1047 CD denotes 11
T1284 1044-1045 -LRB- denotes [
T1283 1043-1044 -LRB- denotes (
T1282 1033-1042 NN denotes infection
R663 T1093 T1092 arg1Of tuberculosis,Mycobacterium
R664 T1093 T1094 arg1Of tuberculosis,(
R665 T1093 T1097 arg1Of tuberculosis,","
R666 T1093 T1107 arg1Of tuberculosis,is
R667 T1095 T1094 arg2Of MTb,(
R668 T1096 T1094 arg3Of ),(
R669 T1100 T1097 arg2Of agent,","
R670 T1100 T1098 arg1Of agent,the
R671 T1100 T1099 arg1Of agent,causative
R672 T1100 T1101 arg1Of agent,of
R673 T1102 T1101 arg2Of tuberculosis,of
R674 T1102 T1103 arg1Of tuberculosis,(
R675 T1104 T1103 arg2Of TB,(
R676 T1105 T1103 arg3Of ),(
R677 T1107 T1106 arg1Of is,","
R678 T1110 T1109 arg1Of common,most
R679 T1111 T1112 arg1Of co-infection,and
R680 T1112 T1107 arg2Of and,is
R681 T1112 T1108 arg1Of and,the
R682 T1112 T1110 arg1Of and,common
R683 T1112 T1114 arg1Of and,of
R684 T1113 T1112 arg2Of cause,and
R685 T1115 T1114 arg2Of death,of
R686 T1115 T1116 arg1Of death,in
R687 T1117 T1116 arg2Of patients,in
R688 T1117 T1118 arg2Of patients,infected
R689 T1118 T1119 arg1Of infected,with
R690 T1123 T1119 arg2Of type,with
R691 T1123 T1120 arg1Of type,human
R692 T1123 T1121 arg1Of type,immunodeficiency
R693 T1123 T1122 arg1Of type,virus
R694 T1123 T1124 arg1Of type,1
R695 T1123 T1125 arg1Of type,(
R696 T1123 T1128 arg1Of type,[
R697 T1123 T1131 arg1Of type,","
R698 T1123 T1132 arg1Of type,[
R699 T1126 T1125 arg2Of HIV-1,(
R700 T1127 T1125 arg3Of ),(
R701 T1129 T1128 arg2Of 1,[
R702 T1130 T1128 arg3Of ],[
R703 T1133 T1132 arg2Of 2,[
R704 T1134 T1132 arg3Of ],[
R705 T1136 T1135 arg1Of engagement,Direct
R706 T1136 T1137 arg1Of engagement,of
R707 T1136 T1144 arg1Of engagement,by
R708 T1136 T1146 arg1Of engagement,on
R709 T1136 T1149 arg1Of engagement,activates
R710 T1140 T1137 arg2Of receptors,of
R711 T1140 T1138 arg1Of receptors,pathogen
R712 T1140 T1139 arg1Of receptors,recognition
R713 T1140 T1141 arg1Of receptors,(
R714 T1142 T1141 arg2Of PRRs,(
R715 T1143 T1141 arg3Of ),(
R716 T1145 T1144 arg2Of MTb,by
R717 T1148 T1146 arg2Of phagocytes,on
R718 T1148 T1147 arg1Of phagocytes,mononuclear
R719 T1151 T1149 arg2Of cascades,activates
R720 T1151 T1150 arg1Of cascades,signaling
R721 T1151 T1152 arg1Of cascades,that
R722 T1151 T1154 arg1Of cascades,induce
R723 T1154 T1153 arg1Of induce,directly
R724 T1155 T1154 arg2Of transcription,induce
R725 T1155 T1156 arg1Of transcription,from
R726 T1155 T1160 arg1Of transcription,(
R727 T1159 T1156 arg2Of LTR,from
R728 T1159 T1157 arg1Of LTR,the
R729 T1159 T1158 arg1Of LTR,proviral
R730 T1161 T1160 arg2Of reviewed,(
R731 T1161 T1162 arg1Of reviewed,in
R732 T1161 T1163 arg1Of reviewed,[
R733 T1164 T1163 arg2Of 3,[
R734 T1165 T1163 arg3Of ],[
R735 T1166 T1160 arg3Of ),(
R736 T1170 T1171 arg1Of cytokines,and
R737 T1171 T1169 arg1Of and,inflammatory
R738 T1171 T1173 arg2Of and,produced
R739 T1171 T1183 arg1Of and,activate
R740 T1172 T1171 arg2Of chemokines,and
R741 T1173 T1178 arg1Of produced,in
R742 T1177 T1173 arg1Of host,produced
R743 T1177 T1174 arg2Of host,by
R744 T1177 T1175 arg1Of host,the
R745 T1177 T1176 arg1Of host,human
R746 T1178 T1180 arg1Of in,to
R747 T1179 T1178 arg2Of response,in
R748 T1182 T1178 arg3Of infection,in
R749 T1182 T1181 arg1Of infection,MTb
R750 T1183 T1167 arg1Of activate,Furthermore
R751 T1183 T1168 arg1Of activate,","
R752 T1186 T1183 arg2Of pathways,activate
R753 T1186 T1184 arg1Of pathways,signal
R754 T1186 T1185 arg1Of pathways,transduction
R755 T1186 T1187 arg1Of pathways,in
R756 T1186 T1194 arg1Of pathways,that
R757 T1186 T1196 arg1Of pathways,result
R758 T1190 T1188 arg1Of cells,CD4
R759 T1190 T1189 arg1Of cells,T
R760 T1190 T1191 arg1Of cells,and
R761 T1191 T1187 arg2Of and,in
R762 T1193 T1191 arg2Of cells,and
R763 T1193 T1192 arg1Of cells,monocytic
R764 T1196 T1195 arg1Of result,also
R765 T1196 T1197 arg1Of result,in
R766 T1196 T1208 arg1Of result,[
R767 T1199 T1197 arg2Of activation,in
R768 T1199 T1198 arg1Of activation,transcriptional
R769 T1199 T1200 arg1Of activation,of
R770 T1205 T1204 arg2Of 4,[
R771 T1206 T1204 arg3Of ],[
R772 T1207 T1200 arg2Of –,of
R773 T1207 T1201 arg1Of –,the
R774 T1207 T1202 arg1Of –,HIV-1
R775 T1207 T1203 arg1Of –,LTR
R776 T1207 T1204 arg1Of –,[
R777 T1209 T1208 arg2Of 6,[
R778 T1210 T1208 arg3Of ],[
R779 T1211 T1212 arg1Of Activation,of
R780 T1211 T1215 arg1Of Activation,via
R781 T1211 T1220 arg1Of Activation,leads
R782 T1211 T1230 arg1Of Activation,expedited
R783 T1214 T1212 arg2Of replication,of
R784 T1214 T1213 arg1Of replication,HIV-1
R785 T1218 T1215 arg2Of pathways,via
R786 T1218 T1216 arg1Of pathways,these
R787 T1218 T1217 arg1Of pathways,MTb-induced
R788 T1220 T1221 arg1Of leads,to
R789 T1220 T1226 arg1Of leads,","
R790 T1221 T1225 arg1Of to,and
R791 T1224 T1221 arg2Of loads,to
R792 T1224 T1222 arg1Of loads,higher
R793 T1224 T1223 arg1Of loads,viral
R794 T1226 T1219 arg1Of ",",ultimately
R795 T1228 T1227 arg2Of turn,in
R796 T1230 T1226 arg2Of expedited,","
R797 T1230 T1227 arg1Of expedited,in
R798 T1230 T1229 arg1Of expedited,","
R799 T1230 T1250 arg1Of expedited,[
R800 T1230 T1253 arg1Of expedited,)
R801 T1234 T1231 arg1Of loss,CD4
R802 T1234 T1232 arg1Of loss,T
R803 T1234 T1233 arg1Of loss,cell
R804 T1234 T1235 arg1Of loss,and
R805 T1235 T1230 arg2Of and,expedited
R806 T1235 T1243 arg1Of and,","
R807 T1235 T1244 arg2Of and,reviewed
R808 T1236 T1235 arg2Of progression,and
R809 T1236 T1237 arg1Of progression,to
R810 T1238 T1237 arg2Of AIDS,to
R811 T1238 T1239 arg1Of AIDS,(
R812 T1241 T1239 arg2Of 7,(
R813 T1241 T1240 arg1Of 7,[
R814 T1242 T1239 arg3Of ],(
R815 T1244 T1245 arg1Of reviewed,in
R816 T1247 T1246 arg2Of 8,[
R817 T1248 T1246 arg3Of ],[
R818 T1249 T1245 arg2Of –,in
R819 T1249 T1246 arg1Of –,[
R820 T1251 T1250 arg2Of 10,[
R821 T1252 T1250 arg3Of ],[
R822 T1259 T1256 arg1Of compromise,the
R823 T1259 T1257 arg1Of compromise,progressive
R824 T1259 T1258 arg1Of compromise,immune
R825 T1259 T1260 arg2Of compromise,associated
R826 T1259 T1265 arg1Of compromise,is
R827 T1260 T1261 arg1Of associated,with
R828 T1263 T1261 arg2Of infection,with
R829 T1263 T1262 arg1Of infection,HIV-1
R830 T1263 T1264 arg1Of infection,itself
R831 T1265 T1254 arg1Of is,Furthermore
R832 T1265 T1255 arg1Of is,","
R833 T1268 T1265 arg2Of cause,is
R834 T1268 T1266 arg1Of cause,a
R835 T1268 T1267 arg1Of cause,major
R836 T1268 T1269 arg1Of cause,of
R837 T1272 T1270 arg1Of reactivation,latent
R838 T1272 T1271 arg1Of reactivation,MTb
R839 T1272 T1276 arg1Of reactivation,as
R840 T1276 T1269 arg2Of as,of
R841 T1276 T1273 arg1Of as,","
R842 T1276 T1274 arg1Of as,as
R843 T1276 T1275 arg1Of as,well
R844 T1278 T1276 arg2Of susceptibility,as
R845 T1278 T1277 arg2Of susceptibility,increased
R846 T1278 T1279 arg1Of susceptibility,to
R847 T1282 T1279 arg2Of infection,to
R848 T1282 T1280 arg1Of infection,primary
R849 T1282 T1281 arg1Of infection,TB
R850 T1282 T1283 arg1Of infection,(
R851 T1285 T1284 arg2Of 11,[
R852 T1286 T1284 arg3Of ],[
R853 T1287 T1283 arg2Of –,(
R854 T1287 T1284 arg1Of –,[
R855 T1287 T1288 arg1Of –,[
R856 T1287 T1291 arg1Of –,","
R857 T1287 T1292 arg2Of –,reviewed
R858 T1289 T1288 arg2Of 15,[
R859 T1290 T1288 arg3Of ],[
R860 T1292 T1293 arg1Of reviewed,in
R861 T1295 T1293 arg2Of 8,in
R862 T1295 T1294 arg2Of 8,[
R863 T1296 T1294 arg3Of ],[
R864 T1297 T1283 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T980 783-786 Protein denotes CD4
T979 552-555 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1773 783-786 http://www.uniprot.org/uniprot/P01730 denotes CD4
T1772 552-555 http://www.uniprot.org/uniprot/P01730 denotes CD4

GO-BP

Id Subject Object Predicate Lexical cue
T1012 511-539 http://purl.obolibrary.org/obo/GO_1904515 denotes activate signal transduction
T1011 477-493 http://purl.obolibrary.org/obo/GO_0075136 denotes host in response
T1007 349-362 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1006 520-539 http://purl.obolibrary.org/obo/GO_0007165 denotes signal transduction
T1005 309-327 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling cascades
T1003 309-318 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T1002 511-539 http://purl.obolibrary.org/obo/GO_1903572 denotes activate signal transduction
T1001 299-327 http://purl.obolibrary.org/obo/GO_1903572 denotes activates signaling cascades
T1000 511-548 http://purl.obolibrary.org/obo/GO_1902533 denotes activate signal transduction pathways
T999 299-327 http://purl.obolibrary.org/obo/GO_1902533 denotes activates signaling cascades
T998 121-126 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T1016 511-548 http://purl.obolibrary.org/obo/GO_0038007 denotes activate signal transduction pathways
T1015 511-539 http://purl.obolibrary.org/obo/GO_1902849 denotes activate signal transduction
T1014 511-539 http://purl.obolibrary.org/obo/GO_0009967 denotes activate signal transduction
T1013 511-539 http://purl.obolibrary.org/obo/GO_1904263 denotes activate signal transduction
T1021 527-539 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction
T1020 520-548 http://purl.obolibrary.org/obo/GO_0035556 denotes signal transduction pathways
T1019 520-548 http://purl.obolibrary.org/obo/GO_0036499 denotes signal transduction pathways
T1018 520-548 http://purl.obolibrary.org/obo/GO_0036500 denotes signal transduction pathways
T1017 520-548 http://purl.obolibrary.org/obo/GO_0036498 denotes signal transduction pathways

GO-CC

Id Subject Object Predicate Lexical cue
T1049 578-583 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1048 558-563 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1047 477-481 http://purl.obolibrary.org/obo/GO_0018995 denotes host

sentences

Id Subject Object Predicate Lexical cue
T929 852-1072 Sentence denotes Furthermore, the progressive immune compromise associated with HIV-1 infection itself is a major cause of latent MTb reactivation, as well as increased susceptibility to primary TB infection ([11]–[15], reviewed in [8]).
T928 657-851 Sentence denotes Activation of HIV-1 replication via these MTb-induced pathways ultimately leads to higher viral loads and, in turn, expedited CD4 T cell loss and progression to AIDS ([7], reviewed in [8]–[10]).
T927 404-656 Sentence denotes Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6].
T926 207-403 Sentence denotes Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]).
T925 0-206 Sentence denotes Mycobacterium tuberculosis (MTb), the causative agent of tuberculosis (TB), is the most common co-infection and cause of death in patients infected with human immunodeficiency virus type 1 (HIV-1) [1], [2].
T17 0-206 Sentence denotes Mycobacterium tuberculosis (MTb), the causative agent of tuberculosis (TB), is the most common co-infection and cause of death in patients infected with human immunodeficiency virus type 1 (HIV-1) [1], [2].
T18 207-403 Sentence denotes Direct engagement of pathogen recognition receptors (PRRs) by MTb on mononuclear phagocytes activates signaling cascades that directly induce transcription from the proviral LTR (reviewed in [3]).
T19 404-656 Sentence denotes Furthermore, inflammatory cytokines and chemokines produced by the human host in response to MTb infection activate signal transduction pathways in CD4 T cells and monocytic cells that also result in transcriptional activation of the HIV-1 LTR [4]–[6].
T20 657-851 Sentence denotes Activation of HIV-1 replication via these MTb-induced pathways ultimately leads to higher viral loads and, in turn, expedited CD4 T cell loss and progression to AIDS ([7], reviewed in [8]–[10]).
T21 852-1072 Sentence denotes Furthermore, the progressive immune compromise associated with HIV-1 infection itself is a major cause of latent MTb reactivation, as well as increased susceptibility to primary TB infection ([11]–[15], reviewed in [8]).

ICD10

Id Subject Object Predicate Lexical cue
T1035 14-26 http://purl.bioontology.org/ontology/ICD10/A15-A19.9 denotes tuberculosis
T1037 159-175 http://purl.bioontology.org/ontology/ICD10/D84.9 denotes immunodeficiency
T1036 57-69 http://purl.bioontology.org/ontology/ICD10/A15-A19.9 denotes tuberculosis

simple1

Id Subject Object Predicate Lexical cue
T1074 783-786 Protein denotes CD4
T1073 552-555 Protein denotes CD4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T2668 783-786 Protein denotes CD4
T2667 552-555 Protein denotes CD4

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1847 783-786 Protein denotes CD4
T1846 552-555 Protein denotes CD4

DLUT931

Id Subject Object Predicate Lexical cue
T1796 783-786 Protein denotes CD4
T1795 552-555 Protein denotes CD4

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2786 497-510 Regulation denotes MTb infection
T2781 955-982 Positive_regulation denotes of latent MTb reactivation,
T2768 260-264 Protein denotes PRRs
T2765 430-439 Protein denotes cytokines
T2762 237-265 Protein denotes recognition receptors (PRRs)
T2761 965-968 Protein denotes MTb
T2759 497-500 Protein denotes MTb
T2758 783-786 Protein denotes CD4
T2754 552-555 Protein denotes CD4
T2748 552-563 Entity denotes CD4 T cells
T2746 276-298 Entity denotes mononuclear phagocytes
T2727 269-272 Protein denotes MTb
T2718 783-793 Entity denotes CD4 T cell
T2716 578-583 Entity denotes cells
T2713 28-31 Protein denotes MTb
T2709 153-196 Protein denotes human immunodeficiency virus type 1 (HIV-1)
T2705 444-463 Protein denotes chemokines produced
T2698 699-710 Protein denotes MTb-induced
R2152 T2759 T2786 themeOf MTb,MTb infection
R2154 T2761 T2781 themeOf MTb,"of latent MTb reactivation,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2134 1071-1072 . denotes .
T2133 1070-1071 -RRB- denotes )
T2132 1069-1070 NNP denotes ]
T2131 1068-1069 CD denotes 8
T2130 1067-1068 NN denotes [
T2129 1064-1066 IN denotes in
T2128 1055-1063 VBN denotes reviewed
T2127 1053-1054 , denotes ,
T2126 1052-1053 NNP denotes ]
T2125 1050-1052 CD denotes 15
T2124 1049-1050 NNP denotes [
T2123 1047-1048 NNP denotes ]
T2122 1045-1047 CD denotes 11
T2121 1044-1045 NNP denotes [
T2120 1043-1044 -LRB- denotes (
T2119 1033-1042 NN denotes infection
T2118 1030-1032 NN denotes TB
T2117 1022-1029 JJ denotes primary
T2116 1019-1021 TO denotes to
T2115 1004-1018 NN denotes susceptibility
T2114 994-1003 VBN denotes increased
T2113 991-993 IN denotes as
T2112 986-990 RB denotes well
T2111 983-985 RB denotes as
T2110 981-982 , denotes ,
T2109 969-981 NN denotes reactivation
T2108 965-968 NNP denotes MTb
T2107 958-964 NN denotes latent
T2106 955-957 IN denotes of
T2105 949-954 NN denotes cause
T2104 943-948 JJ denotes major
T2103 941-942 DT denotes a
T2102 938-940 VBZ denotes is
T2101 931-937 PRP denotes itself
T2100 921-930 NN denotes infection
T2099 915-920 JJ denotes HIV-1
T2098 910-914 IN denotes with
T2097 899-909 VBN denotes associated
T2096 888-898 NN denotes compromise
T2095 881-887 JJ denotes immune
T2094 869-880 JJ denotes progressive
T2093 865-868 DT denotes the
T2092 863-864 , denotes ,
T2091 852-863 RB denotes Furthermore
T2090 850-851 . denotes .
T2089 849-850 -RRB- denotes )
T2088 848-849 NNP denotes ]
T2087 846-848 CD denotes 10
T2086 845-846 NNP denotes [
T2085 843-844 NNP denotes ]
T2084 842-843 CD denotes 8
T2083 841-842 NN denotes [
T2082 838-840 IN denotes in
T2081 829-837 VBN denotes reviewed
T2080 827-828 , denotes ,
T2079 826-827 NNP denotes ]
T2078 825-826 CD denotes 7
T2077 824-825 NNP denotes [
T2076 823-824 -LRB- denotes (
T2075 818-822 NNP denotes AIDS
T2074 815-817 TO denotes to
T2073 803-814 NN denotes progression
T2072 799-802 CC denotes and
T2071 794-798 NN denotes loss
T2070 789-793 NN denotes cell
T2069 787-788 NNP denotes T
T2068 783-786 NNP denotes CD4
T2067 773-782 VBN denotes expedited
T2066 771-772 , denotes ,
T2065 767-771 NN denotes turn
T2064 764-766 IN denotes in
T2063 762-763 , denotes ,
T2062 759-762 CC denotes and
T2061 753-758 NNS denotes loads
T2060 747-752 JJ denotes viral
T2059 740-746 JJR denotes higher
T2058 737-739 TO denotes to
T2057 731-736 VBZ denotes leads
T2056 720-730 RB denotes ultimately
T2055 711-719 NNS denotes pathways
T2054 699-710 JJ denotes MTb-induced
T2053 693-698 DT denotes these
T2052 689-692 IN denotes via
T2051 677-688 NN denotes replication
T2050 671-676 NNP denotes HIV-1
T2049 668-670 IN denotes of
T2048 657-667 NNP denotes Activation
T2047 655-656 . denotes .
T2046 654-655 NNP denotes ]
T2045 653-654 CD denotes 6
T2044 652-653 NN denotes [
T2043 650-651 NNP denotes ]
T2042 649-650 CD denotes 4
T2041 648-649 NNP denotes [
T2040 644-647 NNP denotes LTR
T2039 638-643 NNP denotes HIV-1
T2038 634-637 DT denotes the
T2037 631-633 IN denotes of
T2036 620-630 NN denotes activation
T2035 604-619 JJ denotes transcriptional
T2034 601-603 IN denotes in
T2033 594-600 VBP denotes result
T2032 589-593 RB denotes also
T2031 584-588 WDT denotes that
T2030 578-583 NNS denotes cells
T2028 564-567 CC denotes and
T2027 558-563 NNS denotes cells
T2026 556-557 NNP denotes T
T2025 552-555 NNP denotes CD4
T2024 549-551 IN denotes in
T2023 540-548 NNS denotes pathways
T2022 527-539 NN denotes transduction
T2021 520-526 NN denotes signal
T2020 511-519 VBP denotes activate
T2019 501-510 NN denotes infection
T2018 497-500 NNP denotes MTb
T2017 494-496 TO denotes to
T2016 485-493 NN denotes response
T2015 482-484 IN denotes in
T2014 477-481 NN denotes host
T2013 471-476 JJ denotes human
T2012 467-470 DT denotes the
T2011 464-466 IN denotes by
T2010 455-463 VBN denotes produced
T2009 444-454 NNS denotes chemokines
T2008 440-443 CC denotes and
T2007 430-439 NNS denotes cytokines
T2006 417-429 JJ denotes inflammatory
T2005 415-416 , denotes ,
T2004 404-415 RB denotes Furthermore
T2003 402-403 . denotes .
T2002 401-402 -RRB- denotes )
T2001 400-401 NNP denotes ]
T2000 399-400 CD denotes 3
T1999 398-399 NNP denotes [
T1998 395-397 IN denotes in
T1997 386-394 VBN denotes reviewed
T1996 385-386 -LRB- denotes (
T1995 381-384 NNP denotes LTR
T1994 372-380 JJ denotes proviral
T1993 368-371 DT denotes the
T1992 363-367 IN denotes from
T1991 349-362 NN denotes transcription
T1990 342-348 VBP denotes induce
T1989 333-341 RB denotes directly
T1988 328-332 WDT denotes that
T1987 319-327 NNS denotes cascades
T1986 309-318 VBG denotes signaling
T1985 299-308 VBZ denotes activates
T1984 288-298 NNS denotes phagocytes
T1983 276-287 NN denotes mononuclear
T1982 273-275 IN denotes on
T1981 269-272 NNP denotes MTb
T1980 266-268 IN denotes by
T1979 264-265 -RRB- denotes )
T1978 260-264 NNS denotes PRRs
T1977 259-260 -LRB- denotes (
T1976 249-258 NNS denotes receptors
T1975 237-248 NN denotes recognition
T1974 228-236 NN denotes pathogen
T1973 225-227 IN denotes of
T1972 214-224 NN denotes engagement
T1971 207-213 NNP denotes Direct
T1970 205-206 . denotes .
T1969 204-205 NNP denotes ]
T1968 203-204 CD denotes 2
T1967 202-203 NNP denotes [
T1966 200-201 , denotes ,
T1965 199-200 NNP denotes ]
T1964 198-199 CD denotes 1
T1963 197-198 NN denotes [
T1962 195-196 -RRB- denotes )
T1961 190-195 NN denotes HIV-1
T1960 189-190 -LRB- denotes (
T1959 187-188 CD denotes 1
T1958 182-186 NN denotes type
T1957 176-181 NN denotes virus
T1956 159-175 NN denotes immunodeficiency
T1955 153-158 JJ denotes human
T1954 148-152 IN denotes with
T1953 139-147 VBN denotes infected
T1952 130-138 NNS denotes patients
T1951 127-129 IN denotes in
T1950 121-126 NN denotes death
T1949 118-120 IN denotes of
T1948 112-117 NN denotes cause
T1947 108-111 CC denotes and
T1946 95-107 NN denotes co-infection
T1945 88-94 JJ denotes common
T1944 83-87 RBS denotes most
T1943 79-82 DT denotes the
T1942 76-78 VBZ denotes is
T1941 74-75 , denotes ,
T1940 73-74 -RRB- denotes )
T1939 71-73 NN denotes TB
T1938 70-71 -LRB- denotes (
T1937 57-69 NN denotes tuberculosis
T1936 54-56 IN denotes of
T1935 48-53 NN denotes agent
T1934 38-47 JJ denotes causative
T1933 34-37 DT denotes the
T1932 32-33 , denotes ,
T1931 31-32 -RRB- denotes )
T1930 28-31 NNP denotes MTb
T1929 27-28 -LRB- denotes (
T1928 14-26 NN denotes tuberculosis
T1927 0-13 NNP denotes Mycobacterium
T2029 568-577 JJ denotes monocytic
R1404 T1927 T1928 compound Mycobacterium,tuberculosis
R1405 T1928 T1942 nsubj tuberculosis,is
R1407 T1929 T1930 punct (,MTb
R1411 T1930 T1928 appos MTb,tuberculosis
R1413 T1931 T1930 punct ),MTb
R1452 T2010 T2009 acl produced,chemokines
R1454 T2011 T2010 agent by,produced
R1455 T2012 T2014 det the,host
R1457 T2013 T2014 amod human,host
R1458 T2014 T2011 pobj host,by
R1459 T2015 T2010 prep in,produced
R1461 T2016 T2015 pobj response,in
R1462 T2017 T2016 prep to,response
R1463 T2018 T2020 dep MTb,activate
R1465 T2019 T2020 compound infection,activate
R1466 T2020 T2020 ROOT activate,activate
R1467 T2021 T2023 nmod signal,pathways
R1468 T2022 T2023 compound transduction,pathways
R1469 T2023 T2020 dobj pathways,activate
R1470 T2024 T2023 prep in,pathways
R1472 T2025 T2026 compound CD4,T
R1473 T2026 T2027 compound T,cells
R1474 T2027 T2024 pobj cells,in
R1476 T2028 T2027 cc and,cells
R1477 T2029 T2030 amod monocytic,cells
R1478 T2030 T2027 conj cells,cells
R1480 T2031 T2033 nsubj that,result
R1481 T2032 T2033 advmod also,result
R1482 T2033 T2023 relcl result,pathways
R1483 T2034 T2033 prep in,result
R1485 T2035 T2036 amod transcriptional,activation
R1486 T2036 T2034 pobj activation,in
R1488 T2037 T2036 prep of,activation
R1489 T2038 T2046 det the,]
R1490 T2039 T2041 compound HIV-1,[
R1491 T2040 T2041 compound LTR,[
R1493 T2041 T2046 compound [,]
R1494 T2042 T2043 nummod 4,]
R1495 T2043 T2044 nmod ],[
R1497 T2044 T2046 nmod [,]
R1498 T2045 T2044 nummod 6,[
R1499 T2046 T2037 pobj ],of
R1501 T2047 T2020 punct .,activate
R1502 T2048 T2057 nsubj Activation,leads
R1503 T2049 T2048 prep of,Activation
R1505 T2050 T2049 pobj HIV-1,of
R1506 T2051 T2048 conj replication,Activation
R1507 T2052 T2048 prep via,Activation
R1509 T2053 T2055 det these,pathways
R1511 T2054 T2055 amod MTb-induced,pathways
R1512 T2055 T2052 pobj pathways,via
R1513 T2056 T2057 advmod ultimately,leads
R1514 T2057 T2057 ROOT leads,leads
R1516 T2058 T2057 prep to,leads
R1517 T2059 T2061 amod higher,loads
R1518 T2060 T2061 amod viral,loads
R1519 T2061 T2058 pobj loads,to
R1520 T2062 T2061 cc and,loads
R1521 T2063 T2081 punct ",",reviewed
R1523 T2064 T2081 prep in,reviewed
R1524 T2065 T2064 pobj turn,in
R1525 T2066 T2081 punct ",",reviewed
R1526 T2067 T2071 amod expedited,loss
R1528 T2068 T2069 compound CD4,T
R1529 T2069 T2071 compound T,loss
R1530 T2070 T2071 compound cell,loss
R1532 T2071 T2081 nsubj loss,reviewed
R1533 T2072 T2071 cc and,loss
R1535 T2073 T2071 conj progression,loss
R1536 T2074 T2071 prep to,loss
R1537 T2075 T2074 pobj AIDS,to
R1538 T2076 T2075 punct (,AIDS
R1540 T2077 T2075 appos [,AIDS
R1541 T2078 T2079 nummod 7,]
R1543 T2079 T2075 conj ],AIDS
R1544 T2080 T2071 punct ",",loss
R1545 T2081 T2057 advcl reviewed,leads
R1547 T2082 T2081 prep in,reviewed
R1548 T2083 T2085 amod [,]
R1549 T2084 T2085 nummod 8,]
R1551 T2085 T2082 pobj ],in
R1552 T2086 T2085 appos [,]
R1553 T2087 T2088 nummod 10,]
R1555 T2088 T2085 appos ],]
R1557 T1978 T1976 appos PRRs,receptors
R1559 T2090 T2057 punct .,leads
R1560 T2091 T2102 advmod Furthermore,is
R1561 T1979 T1976 punct ),receptors
R1562 T1980 T1972 prep by,engagement
R1563 T1981 T1980 pobj MTb,by
R1564 T1982 T1972 prep on,engagement
R1565 T1983 T1984 compound mononuclear,phagocytes
R1566 T2092 T2102 punct ",",is
R1567 T2093 T2096 det the,compromise
R1568 T2094 T2096 amod progressive,compromise
R1569 T2095 T2096 amod immune,compromise
R1570 T2096 T2102 nsubj compromise,is
R1571 T1984 T1982 pobj phagocytes,on
R1572 T2097 T2096 acl associated,compromise
R1573 T2098 T2097 prep with,associated
R1574 T1985 T1985 ROOT activates,activates
R1575 T2099 T2100 compound HIV-1,infection
R1576 T2100 T2098 pobj infection,with
R1577 T1986 T1985 xcomp signaling,activates
R1578 T2101 T2100 appos itself,infection
R1579 T2102 T2102 ROOT is,is
R1580 T2103 T2105 det a,cause
R1581 T1987 T1986 dobj cascades,signaling
R1582 T2104 T2105 amod major,cause
R1583 T2105 T2102 attr cause,is
R1584 T2106 T2105 prep of,cause
R1585 T1988 T1990 nsubj that,induce
R1586 T2107 T2109 amod latent,reactivation
R1587 T2108 T2109 compound MTb,reactivation
R1588 T2109 T2106 pobj reactivation,of
R1589 T1989 T1990 advmod directly,induce
R1590 T2110 T2105 punct ",",cause
R1591 T2111 T2113 advmod as,as
R1592 T2112 T2113 advmod well,as
R1593 T2113 T2105 cc as,cause
R1594 T1990 T1987 relcl induce,cascades
R1595 T2114 T2115 amod increased,susceptibility
R1596 T2115 T2105 conj susceptibility,cause
R1597 T2116 T2115 prep to,susceptibility
R1598 T1991 T1990 dobj transcription,induce
R1599 T2117 T2119 amod primary,infection
R1600 T2118 T2119 compound TB,infection
R1601 T1992 T1990 prep from,induce
R1602 T2119 T2116 pobj infection,to
R1603 T2120 T2116 punct (,to
R1604 T2121 T2128 nsubj [,reviewed
R1605 T1993 T1995 det the,LTR
R1606 T2122 T2123 compound 11,]
R1607 T2123 T2121 dobj ],[
R1608 T2124 T2126 nmod [,]
R1609 T2125 T2126 nummod 15,]
R1610 T1994 T1995 compound proviral,LTR
R1611 T2126 T2121 conj ],[
R1612 T2127 T2126 punct ",",]
R1614 T2128 T2102 advcl reviewed,is
R1615 T2129 T2128 prep in,reviewed
R1616 T2130 T2132 compound [,]
R1617 T2131 T2132 nummod 8,]
R1618 T2132 T2129 pobj ],in
R1619 T2133 T2128 punct ),reviewed
R1620 T2134 T2102 punct .,is
R1414 T1932 T1928 punct ",",tuberculosis
R1417 T1933 T1935 det the,agent
R1419 T1934 T1935 compound causative,agent
R1420 T1935 T1928 appos agent,tuberculosis
R1421 T1936 T1935 prep of,agent
R1422 T1937 T1936 pobj tuberculosis,of
R1423 T1938 T1937 punct (,tuberculosis
R1424 T1939 T1937 appos TB,tuberculosis
R1425 T1940 T1937 punct ),tuberculosis
R1426 T1941 T1928 punct ",",tuberculosis
R1427 T1942 T1942 ROOT is,is
R1429 T1943 T1946 det the,co-infection
R1431 T1944 T1945 advmod most,common
R1435 T1945 T1946 amod common,co-infection
R1437 T1946 T1942 attr co-infection,is
R1439 T1947 T1946 cc and,co-infection
R1442 T1948 T1946 conj cause,co-infection
R1445 T1949 T1948 prep of,cause
R1449 T1950 T1949 pobj death,of
R1451 T1951 T1942 prep in,is
R1453 T1952 T1951 pobj patients,in
R1456 T1953 T1952 acl infected,patients
R1460 T1954 T1953 prep with,infected
R1464 T1955 T1956 amod human,immunodeficiency
R1471 T1956 T1957 compound immunodeficiency,virus
R1475 T1957 T1958 compound virus,type
R1479 T1958 T1954 pobj type,with
R1484 T1959 T1958 nummod 1,type
R1487 T1960 T1958 punct (,type
R1492 T1961 T1958 appos HIV-1,type
R1428 T1995 T1992 pobj LTR,from
R1430 T1996 T1995 punct (,LTR
R1432 T1997 T1995 acl reviewed,LTR
R1433 T1998 T1997 prep in,reviewed
R1434 T1999 T1998 pobj [,in
R1436 T2000 T2001 nummod 3,]
R1438 T2001 T1999 appos ],[
R1440 T2002 T1999 punct ),[
R1441 T2003 T1985 punct .,activates
R1443 T2004 T2020 advmod Furthermore,activate
R1444 T2005 T2020 punct ",",activate
R1446 T2006 T2007 amod inflammatory,cytokines
R1447 T2007 T2020 nsubj cytokines,activate
R1448 T2008 T2007 cc and,cytokines
R1450 T2009 T2007 conj chemokines,cytokines
R1496 T1962 T1958 punct ),type
R1500 T1963 T1965 nmod [,]
R1504 T1964 T1965 nummod 1,]
R1508 T1965 T1942 npadvmod ],is
R1510 T1966 T1965 punct ",",]
R1515 T1967 T1969 nmod [,]
R1522 T1968 T1969 nummod 2,]
R1527 T1969 T1965 appos ],]
R1531 T1970 T1942 punct .,is
R1534 T1971 T1972 amod Direct,engagement
R1539 T1972 T1985 nsubj engagement,activates
R1542 T1973 T1972 prep of,engagement
R1546 T1974 T1975 compound pathogen,recognition
R1550 T1975 T1976 compound recognition,receptors
R1554 T1976 T1973 pobj receptors,of
R1556 T1977 T1976 punct (,receptors
R1558 T2089 T2085 punct ),]

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1882 783-788 Protein denotes CD4 T
T1881 552-557 Protein denotes CD4 T
T1880 214-224 Binding denotes engagement
T1879 214-224 Binding denotes engagement
T1878 260-264 Protein denotes PRRs
T1877 228-258 Protein denotes pathogen recognition receptors
R1391 T1877 T1879 themeOf pathogen recognition receptors,engagement
R1392 T1878 T1880 themeOf PRRs,engagement

testone

Id Subject Object Predicate Lexical cue
T855 783-786 Protein denotes CD4
T854 552-555 Protein denotes CD4

test3

Id Subject Object Predicate Lexical cue
T900 783-786 Protein denotes CD4
T899 552-555 Protein denotes CD4
T881 783-786 Protein denotes CD4
T880 552-555 Protein denotes CD4